2024-03-29 20:45:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026299924 4130 bp mRNA linear VRT 10-APR-2020 DEFINITION PREDICTED: Mastacembelus armatus protein argonaute-2 (LOC113126101), transcript variant X1, mRNA. ACCESSION XM_026299924 VERSION XM_026299924.2 DBLINK BioProject: PRJNA489256 KEYWORDS RefSeq. SOURCE Mastacembelus armatus (zig-zag eel) ORGANISM Mastacembelus armatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046643.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 10, 2020 this sequence version replaced XM_026299924.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mastacembelus armatus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4130 /organism="Mastacembelus armatus" /mol_type="mRNA" /db_xref="taxon:205130" /chromosome="11" gene 1..4130 /gene="LOC113126101" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:113126101" CDS 225..2852 /gene="LOC113126101" /codon_start=1 /product="protein argonaute-2 isoform X1" /protein_id="XP_026155709.1" /db_xref="GeneID:113126101" /translation="
MYSSAGAAEMLEGPRSSGSISSDSNVLDPPSSPVPEYVFKPPSRPDFGTMGRTIKLQANFFEMEIPKLEVYHYDIDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVYDGRKNLYTAMPLPIGRDKVELEVTIPGEGKDRSFKVSIKWVSCVSLQALHEALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTPSEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFMCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTIECTVAQYFKDKYKLMLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQDEISKLMRSANFNTDPYVCEFGVMVRDEMTEVNGRVLQAPSILYGGRNKAIATPIQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTELLLKAFTDQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKYTYQGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQVKNVQKTTPQTLSNLCLKINVKLGGVNNILLPQGRPMVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQQHRQDIIQDLATMVRELLIQFYKSTRFKPTRIIYYRDGISEGQFNQVLQHELLAIREACIKLEKDYQPGITFVVVQKRHHTRLFCMDRNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNHFSSDELQVLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQIHQDTLRTMYFA"
misc_feature 546..770 /gene="LOC113126101" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 798..950 /gene="LOC113126101" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 951..1313 /gene="LOC113126101" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1107..1109,1152..1154,1194..1196,1206..1208, 1260..1262,1281..1283,1287..1289) /gene="LOC113126101" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1446..2723 /gene="LOC113126101" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1857..1859,1869..1871,1905..1916,1923..1925, 1947..1949,1956..1958,1968..1970,1980..1982) /gene="LOC113126101" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2061..2063,2067..2069,2277..2279,2691..2693) /gene="LOC113126101" /note="active site" /db_xref="CDD:240015" ORIGIN
tcagctcccgttttgtgtgttggggggatggggccgtgctgaggatgagagactccaaatatttaccacttggctaaccaaatatcttgatttatcaactagacttcttcattcggtcttgtatatagtgatacttttcgctcacgtatgagtctaggtggaatttggccaaaataaagtggagtatatctacgtccacgacacacgcgtaaaaagtcgacaaaatgtattcctctgctggagctgctgagatgcttgagggacctcgttcctctgggtcaataagctctgactccaatgttttagacccaccatcgtccccagtgccggaatatgtgttcaagccaccatcacggccagactttggcaccatgggcaggacaataaagctccaggccaatttctttgagatggaaatccccaaactggaagtctatcattatgacattgacataaagcctgagaaatgccccaggagggtcaatcgcgaaatcgtggagcacatggtccagcactttaaaacgcagatctttggtgatcgaaagccagtgtatgatgggaggaagaatctctacactgcaatgcctttgccgataggcagagacaaagttgagcttgaggtgaccattcctggtgaaggcaaagaccgcagcttcaaggtgtccatcaagtgggtgtcttgtgttagcttgcaagctctccacgaggcactatcaggacggctccccagtgttccctttgagaccatccaggccttggatgtggtcatgagacatttgccctctatgaggtataccccagtggggcgctctttcttcactccctcagagggatgctccaaccccctcggtggtggtagagaggtgtggtttggcttccaccagtctgtcagaccttcactctggaaaatgatgctcaacattgatgtttcagccactgcattctacaaagcacaacctgtaattgagttcatgtgtgaggtcttggatttcaaaagcattgaagaacaacagaaacccttaacagactctcaacgagtgaaatttacaaaggaaattaaaggtttgaaggtggagatcacccactgtgggcagatgaagagaaaatacagagtgtgtaatgtgaccagaagaccagccagccaccaaacgttccctttgcagcaggagaatggccaaacaattgaatgcacagtagcacagtactttaaagacaagtacaagctcatgctgcgatacccccacttaccatgtttacaggtggggcaggagcagaagcacacctacctacctttagaggtgtgtaatatagtggcaggacaacgctgcatcaaaaagctcacagacaatcagacctccaccatgatccgcgccacagcccgatcagcaccagaccgtcaggacgagattagtaaactgatgagaagcgccaatttcaacactgacccttatgtttgtgaatttggcgtgatggtgagagatgagatgacagaagtgaatggccgcgtcctacaagcaccttccattctgtatggaggcaggaacaaagcaatagccacaccaatccagggagtgtgggacatgagaaacaagcagttccacactggcattgagatcaaagtgtgggccattgcctgctttgcaccacagaggcagtgcactgaactcctgctcaaagcattcacagatcagctgaggaagatctctagggatgcagggatgcccattcagggtcagccttgcttctgtaagtatgcccagggagctgacagcgtggagcccatgttcaggcacctcaagtacacctaccaaggcctccagctggttgtggtcatcctacctgggaagacacctgtctacgctgaggtgaaacgtgttggggacacggtgctgggcatggccacacagtgtgtgcaggtgaagaacgttcaaaagacaacacctcagactctgtccaacctctgtctgaagatcaacgtcaaactgggcggtgtcaataacatccttctcccacagggcaggccaatggtgttccagcagccagtgatctttcttggtgcagatgtgactcatccgcctgcgggagatggaaaaaagccgtccattgctgccgttgttggtagtatggatgcacatcccagcagatactgcgccacggtccgggtgcagcagcatcgtcaggacatcattcaggatctggcaaccatggtgagagaactgctcatccagttctacaagtccacccgtttcaagccaacaaggatcatctactaccgtgatggtatttctgagggccagttcaaccaggttcttcagcatgaactgctggccatccgtgaggcctgcatcaagctagagaaggactaccagcctggcatcacatttgttgttgtgcagaagagacaccacacaagactgttctgcatggacagaaacgagagagttgggaagagtggcaacattcctgcaggcacaacagtggacaccaaaataacacatccatcagagtttgacttctacctttgcagtcatgctggcattcagggtaccagcaggccgtctcattaccatgtgctctgggacgacaaccacttctcttcagatgaactgcaggtccttacctaccaattgtgccacacttatgtgcgctgtacccgctcagtttccatcccagcaccagcctactatgcccatttggtggctttccgtgcccgctatcacttggtagacaaagaacatgacagtgctgagggcagtcacacatcaggccagagcaacgggcgtgaccaccaggccttggccaaggccgttcagatccatcaggacaccctccgcaccatgtacttcgcctaagagcgcacaaccccagggtcttggtgcttgaaagaaggagatctcaaaaagaggaggaacccattcactgttgatatgcttaatgatttgcttctctgacaaacataatttatcagccaatcaaagccaagtgcactgaccagaatgggtacttcaatcaggacaaaagtaattagtatattgagcattgtgtgtgattttcacatagggcactatgtgatgataagtgccatttgagaccacctttctgtcatcatttctgtgtaagactatgaattgtttggcccacatcagctgggttttcagtattcctccttgatccttgattgacactgatgactatttaataccagatctgatgacatcttactaaagcattttctgcatcagatgtgctatgagccctctaaccaacacttagtttattctggatgagggggttttagtgctagagatttaaagaacagcaattttttgtcctcctttgcctcacttgttagtctgaactgaaaaagttgcaccattaacccaactcccatgccaagaggcagtatactgggactggatcccaacaaggataccttttgatgtactctgagccgcaatgacaagagacacataacatacaaatgaacagaggggaacttaatgaaatcatttcacgttcccttctgtctttatggtgtgttttatttcaatcatttatgtgataaatatgcatgtagctgacacatgtttgagacaattaggcatttgtgataattgtttgtttctttctgtatatgttaaccctactttttatttttactgtatatagcagcaggatagtgttttctgcaatgtctttgtcagcacaggatatttgtgtggcgtctcaatatccaggcattcggtacagtggagtgacagctgcaacatgttagaattgacctgatcgaaaccccttcaaaaaaagaaaaatcttgaattatagcatttgttccaggaattaggagcagttgtcgcacaaaagcttgggttttatgcaaatgaattttttgtgagtctttatactatatagtaatgttggtaatatggtatattttgaataagctttcagtggtggctgctgaaaatattacaaagattttttttttaagtcacttgcccacagtctaaattaacagtgtatttgtatacagattttaaatgcaaatattgtcttgccttctaagactgttagtcttactaatatttctagacatgccctaacatcaaaactaaagttttattactaac
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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