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2024-03-29 20:45:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_026299924            4130 bp    mRNA    linear   VRT 10-APR-2020
DEFINITION  PREDICTED: Mastacembelus armatus protein argonaute-2
            (LOC113126101), transcript variant X1, mRNA.
ACCESSION   XM_026299924
VERSION     XM_026299924.2
DBLINK      BioProject: PRJNA489256
KEYWORDS    RefSeq.
SOURCE      Mastacembelus armatus (zig-zag eel)
  ORGANISM  Mastacembelus armatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae;
            Mastacembelus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_046643.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 10, 2020 this sequence version replaced XM_026299924.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mastacembelus armatus Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4130
                     /organism="Mastacembelus armatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:205130"
                     /chromosome="11"
     gene            1..4130
                     /gene="LOC113126101"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 34 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:113126101"
     CDS             225..2852
                     /gene="LOC113126101"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X1"
                     /protein_id="XP_026155709.1"
                     /db_xref="GeneID:113126101"
                     /translation="
MYSSAGAAEMLEGPRSSGSISSDSNVLDPPSSPVPEYVFKPPSRPDFGTMGRTIKLQANFFEMEIPKLEVYHYDIDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVYDGRKNLYTAMPLPIGRDKVELEVTIPGEGKDRSFKVSIKWVSCVSLQALHEALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTPSEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFMCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTIECTVAQYFKDKYKLMLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQDEISKLMRSANFNTDPYVCEFGVMVRDEMTEVNGRVLQAPSILYGGRNKAIATPIQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTELLLKAFTDQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKYTYQGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQVKNVQKTTPQTLSNLCLKINVKLGGVNNILLPQGRPMVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQQHRQDIIQDLATMVRELLIQFYKSTRFKPTRIIYYRDGISEGQFNQVLQHELLAIREACIKLEKDYQPGITFVVVQKRHHTRLFCMDRNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNHFSSDELQVLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQIHQDTLRTMYFA"
     misc_feature    546..770
                     /gene="LOC113126101"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    798..950
                     /gene="LOC113126101"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    951..1313
                     /gene="LOC113126101"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1107..1109,1152..1154,1194..1196,1206..1208,
                     1260..1262,1281..1283,1287..1289)
                     /gene="LOC113126101"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1446..2723
                     /gene="LOC113126101"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1857..1859,1869..1871,1905..1916,1923..1925,
                     1947..1949,1956..1958,1968..1970,1980..1982)
                     /gene="LOC113126101"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2061..2063,2067..2069,2277..2279,2691..2693)
                     /gene="LOC113126101"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
tcagctcccgttttgtgtgttggggggatggggccgtgctgaggatgagagactccaaatatttaccacttggctaaccaaatatcttgatttatcaactagacttcttcattcggtcttgtatatagtgatacttttcgctcacgtatgagtctaggtggaatttggccaaaataaagtggagtatatctacgtccacgacacacgcgtaaaaagtcgacaaaatgtattcctctgctggagctgctgagatgcttgagggacctcgttcctctgggtcaataagctctgactccaatgttttagacccaccatcgtccccagtgccggaatatgtgttcaagccaccatcacggccagactttggcaccatgggcaggacaataaagctccaggccaatttctttgagatggaaatccccaaactggaagtctatcattatgacattgacataaagcctgagaaatgccccaggagggtcaatcgcgaaatcgtggagcacatggtccagcactttaaaacgcagatctttggtgatcgaaagccagtgtatgatgggaggaagaatctctacactgcaatgcctttgccgataggcagagacaaagttgagcttgaggtgaccattcctggtgaaggcaaagaccgcagcttcaaggtgtccatcaagtgggtgtcttgtgttagcttgcaagctctccacgaggcactatcaggacggctccccagtgttccctttgagaccatccaggccttggatgtggtcatgagacatttgccctctatgaggtataccccagtggggcgctctttcttcactccctcagagggatgctccaaccccctcggtggtggtagagaggtgtggtttggcttccaccagtctgtcagaccttcactctggaaaatgatgctcaacattgatgtttcagccactgcattctacaaagcacaacctgtaattgagttcatgtgtgaggtcttggatttcaaaagcattgaagaacaacagaaacccttaacagactctcaacgagtgaaatttacaaaggaaattaaaggtttgaaggtggagatcacccactgtgggcagatgaagagaaaatacagagtgtgtaatgtgaccagaagaccagccagccaccaaacgttccctttgcagcaggagaatggccaaacaattgaatgcacagtagcacagtactttaaagacaagtacaagctcatgctgcgatacccccacttaccatgtttacaggtggggcaggagcagaagcacacctacctacctttagaggtgtgtaatatagtggcaggacaacgctgcatcaaaaagctcacagacaatcagacctccaccatgatccgcgccacagcccgatcagcaccagaccgtcaggacgagattagtaaactgatgagaagcgccaatttcaacactgacccttatgtttgtgaatttggcgtgatggtgagagatgagatgacagaagtgaatggccgcgtcctacaagcaccttccattctgtatggaggcaggaacaaagcaatagccacaccaatccagggagtgtgggacatgagaaacaagcagttccacactggcattgagatcaaagtgtgggccattgcctgctttgcaccacagaggcagtgcactgaactcctgctcaaagcattcacagatcagctgaggaagatctctagggatgcagggatgcccattcagggtcagccttgcttctgtaagtatgcccagggagctgacagcgtggagcccatgttcaggcacctcaagtacacctaccaaggcctccagctggttgtggtcatcctacctgggaagacacctgtctacgctgaggtgaaacgtgttggggacacggtgctgggcatggccacacagtgtgtgcaggtgaagaacgttcaaaagacaacacctcagactctgtccaacctctgtctgaagatcaacgtcaaactgggcggtgtcaataacatccttctcccacagggcaggccaatggtgttccagcagccagtgatctttcttggtgcagatgtgactcatccgcctgcgggagatggaaaaaagccgtccattgctgccgttgttggtagtatggatgcacatcccagcagatactgcgccacggtccgggtgcagcagcatcgtcaggacatcattcaggatctggcaaccatggtgagagaactgctcatccagttctacaagtccacccgtttcaagccaacaaggatcatctactaccgtgatggtatttctgagggccagttcaaccaggttcttcagcatgaactgctggccatccgtgaggcctgcatcaagctagagaaggactaccagcctggcatcacatttgttgttgtgcagaagagacaccacacaagactgttctgcatggacagaaacgagagagttgggaagagtggcaacattcctgcaggcacaacagtggacaccaaaataacacatccatcagagtttgacttctacctttgcagtcatgctggcattcagggtaccagcaggccgtctcattaccatgtgctctgggacgacaaccacttctcttcagatgaactgcaggtccttacctaccaattgtgccacacttatgtgcgctgtacccgctcagtttccatcccagcaccagcctactatgcccatttggtggctttccgtgcccgctatcacttggtagacaaagaacatgacagtgctgagggcagtcacacatcaggccagagcaacgggcgtgaccaccaggccttggccaaggccgttcagatccatcaggacaccctccgcaccatgtacttcgcctaagagcgcacaaccccagggtcttggtgcttgaaagaaggagatctcaaaaagaggaggaacccattcactgttgatatgcttaatgatttgcttctctgacaaacataatttatcagccaatcaaagccaagtgcactgaccagaatgggtacttcaatcaggacaaaagtaattagtatattgagcattgtgtgtgattttcacatagggcactatgtgatgataagtgccatttgagaccacctttctgtcatcatttctgtgtaagactatgaattgtttggcccacatcagctgggttttcagtattcctccttgatccttgattgacactgatgactatttaataccagatctgatgacatcttactaaagcattttctgcatcagatgtgctatgagccctctaaccaacacttagtttattctggatgagggggttttagtgctagagatttaaagaacagcaattttttgtcctcctttgcctcacttgttagtctgaactgaaaaagttgcaccattaacccaactcccatgccaagaggcagtatactgggactggatcccaacaaggataccttttgatgtactctgagccgcaatgacaagagacacataacatacaaatgaacagaggggaacttaatgaaatcatttcacgttcccttctgtctttatggtgtgttttatttcaatcatttatgtgataaatatgcatgtagctgacacatgtttgagacaattaggcatttgtgataattgtttgtttctttctgtatatgttaaccctactttttatttttactgtatatagcagcaggatagtgttttctgcaatgtctttgtcagcacaggatatttgtgtggcgtctcaatatccaggcattcggtacagtggagtgacagctgcaacatgttagaattgacctgatcgaaaccccttcaaaaaaagaaaaatcttgaattatagcatttgttccaggaattaggagcagttgtcgcacaaaagcttgggttttatgcaaatgaattttttgtgagtctttatactatatagtaatgttggtaatatggtatattttgaataagctttcagtggtggctgctgaaaatattacaaagattttttttttaagtcacttgcccacagtctaaattaacagtgtatttgtatacagattttaaatgcaaatattgtcttgccttctaagactgttagtcttactaatatttctagacatgccctaacatcaaaactaaagttttattactaac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]