2024-05-04 19:02:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_024646477 846 bp mRNA linear INV 10-APR-2018 DEFINITION Strongyloides ratti Protein argonaute-2 (SRAE_0000056900), partial mRNA. ACCESSION XM_024646477 VERSION XM_024646477.1 DBLINK BioProject: PRJNA304930 BioSample: SAMEA1682816 KEYWORDS RefSeq. SOURCE Strongyloides ratti ORGANISM Strongyloides ratti Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Tylenchina; Panagrolaimomorpha; Strongyloidoidea; Strongyloididae; Strongyloides. REFERENCE 1 (bases 1 to 846) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-APR-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 AUTHORS Aslett,A.Martin. TITLE Direct Submission JOURNAL Submitted (16-SEP-2014) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge Cambridgeshire. CB10 1SA, United Kingdom COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_020171522). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..846 /organism="Strongyloides ratti" /mol_type="mRNA" /strain="ED321 Heterogonic" /db_xref="taxon:34506" /chromosome="Unknown" gene <1..>846 /locus_tag="SRAE_0000056900" /db_xref="GeneID:36373813" CDS 1..846 /locus_tag="SRAE_0000056900" /codon_start=1 /product="Protein argonaute-2" /protein_id="XP_024500654.1" /db_xref="GeneID:36373813" /db_xref="InterPro:IPR003100" /db_xref="UniProtKB/TrEMBL:A0A090KV99" /translation="
MNSQLFFLSIVALEKKNVCRFALSKANELSGNFGNDKLFYAYDGVKNLITNHLLNIDEFVIEREKLGIQYKSIFKNGSVRIFFEKTTRYHEIDLSVYASYLIVTQQALNDKNAGGGGYVQLNGEKSLTESSSFLKYENLRIGLGRIIVGSFTENIKFTNIDEPCFVLSINASKNVYYKSELLDKIIKDEIFRRNVPRLLKDFNAEINDSNIKGVHFETVYRKNGDIIKFRHDLHNHSTIDTIIDMKDGSQKSFAEYFQNKFNIQLKYPVWPLFVYKIHVTN"
misc_feature 565..828 /locus_tag="SRAE_0000056900" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" ORIGIN
atgaatagtcaacttttttttttatcaattgtagcacttgagaaaaaaaatgtctgtagattcgccctaagtaaagctaatgaattaagtggtaattttggaaatgataaacttttctatgcttacgatggtgtgaagaatttaataacaaatcatcttttaaatattgatgaatttgtaattgaaagagaaaaattaggtatccaatacaaaagtattttcaaaaacggtagtgttagaattttttttgaaaaaaccacccgttatcacgagattgatctttccgtctatgctagttatttaattgttacacaacaagcattgaatgacaaaaatgctggaggaggtggatatgttcaattgaatggtgagaagtcattaactgaatcatcatcatttttgaaatatgaaaatttaaggataggtcttggtagaataatagttggtagttttacagaaaacatcaaatttacaaatattgatgaaccatgttttgtactttctattaatgcatctaaaaatgtgtactacaaatctgagcttcttgacaaaattattaaagatgaaatctttagaagaaatgtaccacgcttactaaaagattttaacgctgaaattaatgacagtaatattaaaggtgtccattttgaaacggtgtatagaaaaaatggtgatatcattaagtttcgtcatgatcttcataaccatagtacaatagatacaattattgatatgaaagatggttctcaaaaatcttttgctgaatattttcaaaataaatttaatatacaattaaaatatccagtatggccactttttgtttataaaattcacgttactaattaa
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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