2024-03-29 23:43:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_024202910 2964 bp mRNA linear VRT 15-JUL-2019 DEFINITION PREDICTED: Terrapene carolina triunguis argonaute RISC catalytic component 3 (LOC112108702), mRNA. ACCESSION XM_024202910 VERSION XM_024202910.1 DBLINK BioProject: PRJNA435426 KEYWORDS RefSeq. SOURCE Terrapene carolina triunguis (Three-toed box turtle) ORGANISM Terrapene carolina triunguis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020664587.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Terrapene carolina triunguis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2964 /organism="Terrapene carolina triunguis" /mol_type="mRNA" /isolate="2854851" /isolation_source="Kennedy Woods, Forest Park" /sub_species="triunguis" /db_xref="taxon:2587831" /chromosome="Unknown" /sex="male" /tissue_type="blood" /country="USA: St. Louis, MO" gene 1..2964 /gene="LOC112108702" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:112108702" CDS 157..2739 /gene="LOC112108702" /codon_start=1 /product="protein argonaute-3" /protein_id="XP_024058678.1" /db_xref="GeneID:112108702" /translation="
MEIGSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYDADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 373..657 /gene="LOC112108702" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 685..837 /gene="LOC112108702" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 838..1200 /gene="LOC112108702" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(994..996,1039..1041,1081..1083,1093..1095, 1147..1149,1168..1170,1174..1176) /gene="LOC112108702" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1333..2610 /gene="LOC112108702" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1744..1746,1756..1758,1792..1803,1810..1812, 1834..1836,1843..1845,1855..1857,1867..1869) /gene="LOC112108702" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1948..1950,1954..1956,2164..2166,2578..2580) /gene="LOC112108702" /note="active site" /db_xref="CDD:240015" ORIGIN
gggaggccgcccagctgccgttgcttcacagccccgctccccgggccggccggccggacccggcgccgcggggagagagggggccgcgcccggcccggtggggagaggcaggatcctgatcccgcagcctgagaacggccgcccccagctccatgaatggaaatcggcagcgcaggacccgtcggggcacagccccttcttatggtgcccagacgtcccggctatggcaccatgggcaaacctattaaattgctggccaactgcttccaagttgaaatcccaaagattgatgtctacctctatgaggtggatattaaaccagataagtgtcctcgcagggtgaacagggaggtggtggactccatggtgcagcattttaaagtgacaatatttggggaccgtagaccagtttatgatgggaagagaagcctttatacagccaatccactccctgtagcaaccactggggtagatttggatgtaacattaccaggagaaggtggaaaagatcgtcccttcaaggtgtcaataaagtttgtttctcgggtgagctggcacttgctgcatgaagttttgacaggaagaaccttgcctgagcctctggaactagacaaaccaatcagcactaaccctgttcatgctgtcgatgtggtgctacgacacctaccctccatgaagtatacccctgtgggccgctcctttttctcagctccagagggctatgatcaccctttgggagggggcagggaagtatggtttggattccatcagtctgttcggcctgccatgtggaaaatgatgcttaatattgatgtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttctcgacattcataacattgatgaacaaccgagacctctgactgattctcatcgggtaaaattcaccaaagagataaagggtctgaaggttgaagtgactcactgtggaacaatgagacggaaataccgtgtttgtaatgtaacaaggagacctgccagtcatcaaaccttccctttacagttagaaaacggccagacagttgagagaacagtagcacagtacttcagagagaagtataacctccagctgaaatatcctcatcttccttgtctacaagtgggacaggagcagaaacatacctacctgcctctagaagtatgtaacattgtggcaggccagcgatgtatcaagaagctaacagacaatcagacatcaactatgataaaagcaacagcaagatctgccccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgatgcagatccatttgttcaagagtttcagtttaaagttcgggatgagatggcccatgtgactgggcgtgtgcttccagctccaatgttgcagtatggaggacggaatcgaacagtggcaaccccaagccatggcgtatgggatatgcgagggaaacagtttcacactggtgttgagatcaaaatgtgggccatagcttgctttgcaacgcagagacaatgcagagaagaaatactgaagggttttacagatcagctgcgcaagatttcgaaggatgcagggatgcccatccaaggccagccatgtttttgcaaatacgcacagggtgcggacagcgtggagccgatgttccgacaccttaaaaacacctattcaggactccagctcatcattgtcatcctgccagggaaaacacctgtgtatgccgaggtgaaacgtgtgggagatacgctgttggggatggccacgcagtgcgttcaagtcaagaatgtcataaaaacatctcctcagactctctcaaacctgtgcctaaagattaatgttaaattaggaggaatcaacaacattcttgtacctcatcaacgaccttctgtgttccaacaaccagtgatcttcttgggagcagatgtcactcatccgcctgctggggatggaaagaagccttccattgctgctgttgtaggtagtatggatgctcatccaagcaggtattgtgccacagtgagagttcaaaggcctcggcaggagattatccaagatttggcctccatggtaagagaacttctcatccagttctacaagtcaacacgattcaaacccacacgtatcatcttctacagggatggggtttctgaaggacagtttcgacaggtgttgtattatgagctgctagcaattagagaggcctgcatcagtctggagaaagattaccagccaggaataacctacatcgtagtacagaaacgacaccacacacgattgttctgtgcggacagaactgaaagggttggaagaagtggcaacattccagctggaacaactgtagatacagatattacacacccatacgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccctcacactatcatgttttgtgggatgataactgttttactgcagatgaacttcagctgctgacttaccagctatgccacacatatgtgcgttgcacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcattcagagcacgataccatcttgtggacaaagaacatgacagtgctgaaggaagccatgtttcaggacaaagcaatgggagagacccacaggcccttgctaaggctgtacagattcaccaagacaccttacgcaccatgtacttcgcttaaataaatcaataaaatcggagcatactcactgaaaggaagaactgaaaaattaagccacatacaatgtatgtttccggtggggtcagtttatggggtgcgcctccgatcacgctgaagccgacactgtgcaggggcaaggggctaatccttaaattgacacgtggaggattgtttacttcatcgaggaacacagcactattatgcaatatgaaaccagccaactgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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