2024-03-29 07:51:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023701070 2513 bp mRNA linear ROD 24-JAN-2018 DEFINITION PREDICTED: Octodon degus protein argonaute-1 (LOC101571277), transcript variant X2, mRNA. ACCESSION XM_023701070 VERSION XM_023701070.1 DBLINK BioProject: PRJNA193441 KEYWORDS RefSeq. SOURCE Octodon degus (degu) ORGANISM Octodon degus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004524706.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Octodon degus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2513 /organism="Octodon degus" /mol_type="mRNA" /isolate="3935" /db_xref="taxon:10160" /chromosome="Unknown" /sex="female" gene 1..2513 /gene="LOC101571277" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:101571277" CDS 202..2487 /gene="LOC101571277" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_023556838.1" /db_xref="GeneID:101571277" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERLLGLDPIYRPALREGKGNYHLLNFSYVPDTVQGVFLTATL"
misc_feature 277..2343 /gene="LOC101571277" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1369..>2364 /gene="LOC101571277" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1780..1782,1792..1794,1828..1839,1846..1848, 1870..1872,1879..1881,1891..1893,1903..1905) /gene="LOC101571277" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" ORIGIN
gctcgcagggggagctgctgcaggctccgcggcggcggcggcggcaacggaggctgcgggggcggcggcgcgagcggccgggcttgggggtggagccgagcccggcccgggagtccgagcggcgagagtgcggggtccctaggcccctcacgctggaccccacaatctctgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcgcctatctgccccccctgcagcaggtgttccaagcacctcgtcggcctgggattggcactgtggggaaaccaatcaagctcctggcgaattactttgaggtggacattcctaaaattgacgtctaccactacgaggtggacatcaagccggataagtgtccccgcagggtcaaccgagaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttatactgtcactgccttgcccattggcaatgaacgggttgactttgaggtgacaatccctggggagggaaaggatcgaatttttaaggtctccatcaagtggctagccattgtgagctggcgtatgctacatgaagctctggtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcatctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcggcgactgccttctacaaggcacagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagccactcacggactcccagcgtgttcgctttaccaaggagatcaagggcctgaaggtagaagtcactcactgtggacagatgaagaggaaataccgcgtgtgtaacgttacccgacgccctgctagccaccagacgtttcccttacagctggaaagtggacagactgtggaatgcacagtggcacaatatttcaagcagaaatacaaccttcagctcaagtatccccaccttccgtgcctgcaagttggccaggaacaaaagcatacgtacctgcctcttgaggtctgtaatattgtagctgggcagcgctgcattaagaagctgactgacaaccagacttcaaccatgataaaggctacagctaggtcggctccagacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacatccaagaatttggaatcaaagtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccggaatcgggccattgccacacccaaccaaggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcttgcttcgcaccgcaaaagcagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcggggatgcccatccagggtcagccttgtttctgcaaatatgcacagggagcagatagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacaccagtgtatgctgaagtgaagcgtgttggagatacgcttttgggaatggcaacgcagtgtgtgcaggtgaagaatgtggtgaagacctcgcctcagactctgtccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgctgtctttcaacagccagtgatattcttgggagcagatgttacacatcccccagcaggggacgggaaaaaaccttctatcacagcagtagtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtgcagcgaccacggcaggagatcattgaagacttgtcctacatggtgcgtgagctgctcatccagttctacaagtctacccgtttcaagcctacccgcatcatcttttatcgagatggggtccctgaaggccagctcccccagatccttcactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggattacttatattgtggtgcagaaacgccatcatacccgccttttttgtgctgacaagaacgagcgactccttggcctagaccctatatatagaccagctctcagagaagggaaagggaactaccatttattgaacttctcctatgtgccagacactgtacaaggcgtcttcctcacagcaaccctgtgaggtaggtactattattatctccaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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