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2024-03-29 07:51:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_023701070            2513 bp    mRNA    linear   ROD 24-JAN-2018
DEFINITION  PREDICTED: Octodon degus protein argonaute-1 (LOC101571277),
            transcript variant X2, mRNA.
ACCESSION   XM_023701070
VERSION     XM_023701070.1
DBLINK      BioProject: PRJNA193441
KEYWORDS    RefSeq.
SOURCE      Octodon degus (degu)
  ORGANISM  Octodon degus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Hystricomorpha; Octodontidae; Octodon.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004524706.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Octodon degus Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Octodon degus"
                     /mol_type="mRNA"
                     /isolate="3935"
                     /db_xref="taxon:10160"
                     /chromosome="Unknown"
                     /sex="female"
     gene            1..2513
                     /gene="LOC101571277"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101571277"
     CDS             202..2487
                     /gene="LOC101571277"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X2"
                     /protein_id="XP_023556838.1"
                     /db_xref="GeneID:101571277"
                     /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERLLGLDPIYRPALREGKGNYHLLNFSYVPDTVQGVFLTATL"
     misc_feature    277..2343
                     /gene="LOC101571277"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    1369..>2364
                     /gene="LOC101571277"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1780..1782,1792..1794,1828..1839,1846..1848,
                     1870..1872,1879..1881,1891..1893,1903..1905)
                     /gene="LOC101571277"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
ORIGIN      
gctcgcagggggagctgctgcaggctccgcggcggcggcggcggcaacggaggctgcgggggcggcggcgcgagcggccgggcttgggggtggagccgagcccggcccgggagtccgagcggcgagagtgcggggtccctaggcccctcacgctggaccccacaatctctgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcgcctatctgccccccctgcagcaggtgttccaagcacctcgtcggcctgggattggcactgtggggaaaccaatcaagctcctggcgaattactttgaggtggacattcctaaaattgacgtctaccactacgaggtggacatcaagccggataagtgtccccgcagggtcaaccgagaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttatactgtcactgccttgcccattggcaatgaacgggttgactttgaggtgacaatccctggggagggaaaggatcgaatttttaaggtctccatcaagtggctagccattgtgagctggcgtatgctacatgaagctctggtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcatctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcggcgactgccttctacaaggcacagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagccactcacggactcccagcgtgttcgctttaccaaggagatcaagggcctgaaggtagaagtcactcactgtggacagatgaagaggaaataccgcgtgtgtaacgttacccgacgccctgctagccaccagacgtttcccttacagctggaaagtggacagactgtggaatgcacagtggcacaatatttcaagcagaaatacaaccttcagctcaagtatccccaccttccgtgcctgcaagttggccaggaacaaaagcatacgtacctgcctcttgaggtctgtaatattgtagctgggcagcgctgcattaagaagctgactgacaaccagacttcaaccatgataaaggctacagctaggtcggctccagacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacatccaagaatttggaatcaaagtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccggaatcgggccattgccacacccaaccaaggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcttgcttcgcaccgcaaaagcagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcggggatgcccatccagggtcagccttgtttctgcaaatatgcacagggagcagatagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacaccagtgtatgctgaagtgaagcgtgttggagatacgcttttgggaatggcaacgcagtgtgtgcaggtgaagaatgtggtgaagacctcgcctcagactctgtccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgctgtctttcaacagccagtgatattcttgggagcagatgttacacatcccccagcaggggacgggaaaaaaccttctatcacagcagtagtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtgcagcgaccacggcaggagatcattgaagacttgtcctacatggtgcgtgagctgctcatccagttctacaagtctacccgtttcaagcctacccgcatcatcttttatcgagatggggtccctgaaggccagctcccccagatccttcactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggattacttatattgtggtgcagaaacgccatcatacccgccttttttgtgctgacaagaacgagcgactccttggcctagaccctatatatagaccagctctcagagaagggaaagggaactaccatttattgaacttctcctatgtgccagacactgtacaaggcgtcttcctcacagcaaccctgtgaggtaggtactattattatctccaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]