2024-04-19 20:06:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023701038 3358 bp mRNA linear ROD 24-JAN-2018 DEFINITION PREDICTED: Octodon degus protein argonaute-3 (LOC101573127), transcript variant X3, mRNA. ACCESSION XM_023701038 VERSION XM_023701038.1 DBLINK BioProject: PRJNA193441 KEYWORDS RefSeq. SOURCE Octodon degus (degu) ORGANISM Octodon degus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004524706.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Octodon degus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3358 /organism="Octodon degus" /mol_type="mRNA" /isolate="3935" /db_xref="taxon:10160" /chromosome="Unknown" /sex="female" gene 1..3358 /gene="LOC101573127" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:101573127" CDS 779..2659 /gene="LOC101573127" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_023556806.1" /db_xref="GeneID:101573127" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 779..1120 /gene="LOC101573127" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(914..916,959..961,1001..1003,1013..1015,1067..1069, 1088..1090,1094..1096) /gene="LOC101573127" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1253..2530 /gene="LOC101573127" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1664..1666,1676..1678,1712..1723,1730..1732, 1754..1756,1763..1765,1775..1777,1787..1789) /gene="LOC101573127" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1868..1870,1874..1876,2084..2086,2498..2500) /gene="LOC101573127" /note="active site" /db_xref="CDD:240015" ORIGIN
caggacctgttggggcccagcccctactcatggtgcccagaagacccggctatggcaccatgggcaaacccattaagctgctggctaattgttttcaagttgaaatcccaaagattgatgtctacctctatgaagtagacattaaaccagacaaatgtcctaggagagtgaacagggaggtagttgactcaatggttcagcattttaaagtaactatatttggagaccgtagaccagtatatgacggaaaaagaagcctttatacagctaatccacttcctgtggcaactactggggtagatttagatgttacattacctggggaaggtggaaaagatcgacctttcaaggtgtcaatcaaatttgtctctcgggtgagttggcacctgctgcatgaagtactcacaggacggaccttgcctgagccactggaattagacaagccaatcagcactaaccctgtccatgccgttgatgtggtgctacgacatctgccctccatgaaatatacacctgtggggcgttcctttttctcagctccagaaggatatgaccaccctcttggagggggcagggaagtatggtttggattccatcaatctgttcgacctgccatgtggaaaatgatgcttaatattgacgaaagagacctctggcagcagtgtggaaaatagatagaggagaaaaaactaatctgagaagccagttaggagacttttcaatcactagttcagtttctgccactgccttctacaaagcacaacctgtcattcagtttatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctaaaagttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacgagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccagactgttgagagaacagtagcacagtacttcagagaaaagtatactctccagctgaaatacccacaccttccctgtctgcaagtggggcaggaacagaagcatacctacctgccactagaagtctgtaatattgtggcagggcaacgatgcatcaaaaagctaacagacaatcagacttctactatgatcaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacggatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtcaccggacgcgtccttccagcacctatgctccagtatggaggacggaaccgaacagtagcaacaccaagccatggggtatgggacatgcgtggaaaacagttccacacaggagttgaaatcaaaatgtgggccattgcttgttttgccacacagagacagtgcagagaagaaatattaaaggggttcacggaccagctgcgtaaaatctccaaggatgcaggaatgcccatccagggccagccatgtttctgcaaatatgcacagggagcagacagtgtagagcccatgtttcggcatctcaagaacacatattctgggctacagctcattattgtcatcctgccagggaaaacaccagtatatgcagaggtaaaacgtgtaggagatacacttttgggtatggctacccagtgtgttcaagtcaagaatgtaataaaaacatctcctcaaactctctcaaatttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatatttttgggagcagatgtcactcatcctcctgctggtgatggaaagaagccctctatcgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtcagagttcagagacctcgacaggagatcatacaagatttggcctccatggtccgggaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttagacaggtattatattatgaactacttgcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtggttcagaagagacatcatactcgattattttgtgctgataggactgaaagggttggaagaagtggcaatattccagctggaacaacagttgatacggacattacacacccatatgagtttgatttttacctttgtagccatgctggaatacagggtaccagccgtccttcgcactatcatgttttatgggatgataattgctttactgcagatgaacttcaactgctaacttaccagctctgccacacttatgtacgctgtacacgatctgtttctatacctgcaccagcatattatgctcatctggtggcattcagagccagataccatcttgtggacaaagaacatgacagtgctgaaggaagccatgtttcaggacagagcaatgggcgagacccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaacaagtccaagtgtgttcttgaagggaagaactgagcgatgaatcaacatacagcatatgtctccagtagtccactgagtagatgtgtctccagccatacagaagccagcactgtgtgggagcccggtccttatgttgatgcaaggaagattgtttacttcatcaaggaacgcagcaccattatgcaatataaaaccagccagctgctttttgtgcggtctcctgtaggaagtatcgcagttgttttgttttctcttcttatagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaagtaaagcaaaagtaaatgatggtttaaaaaacatacacctacacaaataatcaaagtgaatattcacaattacgtgtgcaaaaaattaatgtgcattcatatattcttgtaaacggagtctgtttttaaatatatacatgcatatttcataggcatatatatctgagtctagatggataatagatatatatgtgtttatgtatatattttaggattcattccattggggaattttccttcccttttattctctgctcactaccaccttcatttctctctcaacctcccttgccctcatcttctatattcctaatgctgccagtgacattcaaatgttcatcgatgtggctcatttgaatgtgaagcgtggcaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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