LOCUS       XM_023476568            2876 bp    mRNA    linear   INV 16-OCT-2023
DEFINITION  PREDICTED: Eurytemora carolleeae protein argonaute-2
            (LOC111704341), mRNA.
ACCESSION   XM_023476568
VERSION     XM_023476568.1
DBLINK      BioProject: PRJNA423276
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Eurytemora carolleeae
  ORGANISM  Eurytemora carolleeae
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea;
            Multicrustacea; Hexanauplia; Copepoda; Calanoida; Temoridae;
            Eurytemora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_019396495.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000591075.1-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/05/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2876
                     /organism="Eurytemora carolleeae"
                     /mol_type="mRNA"
                     /db_xref="taxon:1294199"
                     /chromosome="Unknown"
     gene            1..2876
                     /gene="LOC111704341"
                     /note="protein argonaute-2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:111704341"
     CDS             49..2661
                     /gene="LOC111704341"
                     /codon_start=1
                     /product="protein argonaute-2"
                     /protein_id="XP_023332336.1"
                     /db_xref="GeneID:111704341"
                     /translation="

MYPGRPNPGTGLPQNSVMPGQGSLAPGSMPPGQGALPPVQTPLGLGFGAGGLGQSLPSYGGQSSTYGGQSGFSGSQTGSFGGTGSYGGSSGGNGNGGIHGQLPGLLGALGGIGGLGPMVPPPLQTDRPVHSSGSSNSPPSQLVSPLNISPPGLPSPDNPVFNCPRRPNLGREGRPIVLRANHFRIDMPRGYINHYIISIQPDKCPRRVNRDIIQTMVNAYSKIFGTQKPVFDGRSNLYVRDPLPIGKDAVELEVTLDGEGKDRVFRVSIKWHAQVSLFALEEALEGRTRQIPHDAIQALDVVMRHLPSLTYTPVGRSFFSSPEGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQAAIDFMCEVLDIRDINEQKRPLTDSMRVKFTKEIKGLKIEITHCGNMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRFPHLPCLQEFGLHISRELMEVRGRVLPPPKLQYGGRTKQQALPNQGVWDMRGKQFFSGVDIKDWAIACFAPQRTVREDSLRTFTQQLQKISSDMGMPIIGQPCFCKYAGGEDQVEPMFRFLKTSFPALQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSAQTLSNLCLKINVKLGGVNSILVPNIRPKVFNEPVIFLGADVTHPPVGDSRKPSIAAVVGSQDAHPSRYAATVRVQKHRQEIIEDLSAMVKEHLTMFYKSTGGYKPHRIIMYRDGVSEGQFSQVLQLEFDFYLCSHQGIQGTSRPSHYHVLWDDNRFEADELQQLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRSRYHLVEKEHDSGEGSHTSSLGSEDRAPAAMARAITVHTDSMKVMYFA"

     misc_feature    568..957
                     /gene="LOC111704341"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    985..1137
                     /gene="LOC111704341"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1138..1446
                     /gene="LOC111704341"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    1435..2529
                     /gene="LOC111704341"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1846..1848,1858..1860,1894..1905,1912..1914,
                     1936..1938,1945..1947,1957..1959,1969..1971)
                     /gene="LOC111704341"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2050..2052,2056..2058,2269..2271,2497..2499)
                     /gene="LOC111704341"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

aaggaatttgaactctagtcttgagtttagttaaaaactagtgccaatatgtatcctggaagacccaaccctggaactggtctgccacagaactcagttatgcctggacagggttcccttgctccgggttctatgccccctggtcagggtgctctaccccctgttcagactcctctaggactagggttcggagctggaggtctaggacagtctctgccatcgtatggaggtcaaagttctacctatgggggacagtccggattttccggctcccaaactggttctttcggaggaaccggttcttacggtggatccagcggtggaaatggtaacggaggtatccacggccaactgcccggccttttgggagctcttggtgggattggcggtctgggcccgatggtacccccgcccctgcaaactgaccggccggtacatagttcaggaagctccaactccccgccgtcccagcttgtgtctccacttaacatatccccgcccggcctgccctcacccgacaaccctgtcttcaactgcccaaggcgccccaatcttggaagagagggtagacctattgtgcttcgagcaaaccactttagaattgacatgccgaggggttacatcaaccactatatcatctcaattcagccggataaatgccccaggagggtcaatagagatatcattcaaacaatggtaaacgcatacagcaagatatttggaacccagaaacctgtatttgatggaagaagcaatctttatgtcagagatcctcttcccatcggtaaggatgctgttgagcttgaagtaaccctggatggagaaggaaaggatcgtgtgttcagggtttctatcaagtggcatgctcaggtgtctctgtttgccctggaagaagcactagagggtagaaccagacagatcccccacgatgcaatccaggcattggacgtggtgatgcgacacttgccttccctgacttatactcctgtaggacgatcattcttctccagccctgagggttactaccacccgctgggcggaggtcgtgaggtttggtttggtttccatcaatctgtccgccccagccagtggaagatgatgctcaacattgacgtgtccgccactgccttctacaaggcccaggcggcaatagacttcatgtgcgaggtgctggatatccgtgatatcaacgagcagaagcgccctctcacagattctatgagagtcaagttcactaaagaaatcaagggactaaaaattgaaatcactcactgcgggaacatgagaagaaaatacagggtgtgcaacgtgacccgccggcctgcgcagatgcagagtttccctcttcagctggagaacggacagacagtggagtgtacggtcgctaaatatttcttggataaatataagatgaagcttaggttccctcaccttccctgtttacaggagttcggtcttcatatatctagagaactaatggaggtacgaggacgtgtcctgccccctcctaaactacagtatggaggacgcaccaaacaacaagctctacccaaccaaggagtatgggatatgagggggaaacagttcttctcaggagtcgatatcaaggattgggcaattgcttgctttgctcctcagcgtacagtacgcgaagactccctacgtacgttcacccagcagctgcagaagatcagttccgacatgggaatgccgataataggacaaccctgtttctgtaagtatgcggggggagaggaccaagtagaaccaatgtttaggtttctcaagacctccttccctgctctacagctagttgttgttgttctacctggcaaaactccagtctatgcggaggtgaagagagttggagatacagtccttggtatggcaactcagtgtgtccaggctaagaatgtaaacaagacatcagcgcagacattgtccaacctttgcttgaagattaacgtgaagctgggaggagttaactctatccttgtcccgaatatcaggcctaaggtgttcaatgaacctgtaatattccttggagctgatgtaactcatcctcctgtaggagactcaaggaaacccagtatagcagctgtagtaggaagccaggatgctcatccttctaggtatgcagcaactgttcgtgtacagaaacatcgccaggagatcattgaggatctttctgctatggtgaaggaacatcttaccatgttctataaatccacaggagggtacaagccccacaggattattatgtacagagatggagtctcggagggtcagttctcgcaggttcttcagttagagtttgatttctatctgtgttcccaccagggaatccagggaactagcagacccagccactaccatgtactctgggatgataataggtttgaagctgatgaactgcagcagctgacctatcagctgtgtcacacctatgtacggtgtacacgttctgtatcaattcctgctcctgcgtactatgcacatttagtagctttcaggtcccgttatcacctggttgaaaaggaacatgacagtggagaaggttcccacacctctagcctgggatcagaggacagagccccagcagccatggcccgggcaatcacagtccacaccgactcaatgaaagtcatgtacttcgcgtagaagatcgtcgtcatcaggaggtttatggaatccttctcccacaaattccattctaaattttatcattacgcattcatctcatgcgtacatatgatttactaattttgttcaagctgttatacaattttagacttgttgcacaattatggaatattcccgttgtgcatttttgaaatagtttctatcgctaggtcaataaaattcaaattcttcaa

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