2024-04-27 12:46:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023304302 3774 bp mRNA linear INV 08-AUG-2019 DEFINITION PREDICTED: Drosophila hydei protein argonaute-2 (LOC111592223), transcript variant X3, mRNA. ACCESSION XM_023304302 VERSION XM_023304302.2 DBLINK BioProject: PRJNA501994 KEYWORDS RefSeq. SOURCE Drosophila hydei ORGANISM Drosophila hydei Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022045656.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_023304302.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila hydei Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3774 /organism="Drosophila hydei" /mol_type="mRNA" /strain="15085-1641.00,03,60" /db_xref="taxon:7224" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="whole body" /dev_stage="adult" gene 1..3774 /gene="LOC111592223" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 63 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:111592223" CDS 113..2893 /gene="LOC111592223" /codon_start=1 /product="protein argonaute-2 isoform X3" /protein_id="XP_023160070.1" /db_xref="GeneID:111592223" /translation="
MYPVGQPPPAPGSSVNPTAVTSPSAQNVAAGGATVGGAAAAAAAQVASALGTTGVSAAIAAAEASPTTQPDMPVFTCPRRPNLGREGRPIVLRANHFQVTMPRGFVHHYDINIQPDKCPRKVNREIIETMVQAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMAYTPVGRSFFSSPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINTLVKRADFNNDPYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVSSGITGQQLLPPQNKVSLASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTLQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEREYRPGITFIVVQKRHHTRLFCAEKREQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA"
misc_feature 374..763 /gene="LOC111592223" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 791..943 /gene="LOC111592223" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 944..1306 /gene="LOC111592223" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1100..1102,1145..1147,1187..1189,1199..1201, 1253..1255,1274..1276,1280..1282) /gene="LOC111592223" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1439..2764 /gene="LOC111592223" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1895..1897,1907..1909,1943..1954,1961..1963, 1985..1987,1994..1996,2006..2008,2018..2020) /gene="LOC111592223" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2099..2101,2105..2107,2318..2320,2732..2734) /gene="LOC111592223" /note="active site" /db_xref="CDD:240015" ORIGIN
tacaagaacaatcaattacatttaaaacacatacacgaaaagcgaaaacaaataaataaacaaaaaacctttgtatacattcttacatttcttaaacaaatactagtgcaaaatgtatccagttggacaaccaccaccagcgcccggttcatctgtaaatcccaccgctgtgaccagtccgagtgctcagaatgttgctgcaggcggtgccaccgttggtggggccgcagctgcagctgctgctcaagtggcctctgcattgggcaccacgggcgtttcggcagcgattgctgcggcagaggcatcgcccacaacgcagcccgatatgcccgtctttacgtgcccacgtcgcccaaatttaggacgggagggcaggccgattgtgttgcgtgcgaatcactttcaggtgacaatgccacgtggcttcgtacatcactatgacatcaacatacagccggacaagtgtccgcgtaaggtgaatcgtgagatcatcgagactatggtgcaggcttacagcaagatatttggggtgcttaagccagtttttgatggacgcaacaatttgtatacacgcgatccgttgcccattggcaatgaacggttggagctggaggtgacgctgcccggtgagggcaaggatcgcatctttcgtgtgacgattaagtggcaggcgcaggtgtcgctctttaatctggaggaagctctggagggacgtacacgccaaataccctatgatgccatcttagcgcttgatgtggtcatgcggcacttgcctagcatggcgtacacgccagtaggacgcagtttctttagttcacccgacggctactatcatcctttgggtggcggtcgtgaagtctggttcggtttccatcagagcgtgcgaccatcgcagtggaaaatgatgctcaacattgatgtttcggctactgctttttacaaggctcaacctgtcattgattttatgtgcgaggttttggatattcgcgacattaatgaacaacgtaaaccacttaccgattcgcagcgcgttaagttcaccaaggagatcaaaggactcaaaattgagataactcactgcggtcaaatgcgtcgaaaatatcgcgtctgtaatgtgacccgtcgaccagctcaaatgcaatccttcccactgcaactggagaatggacaaactgtggagtgcaccgtggccaagtactttttggataagtatcgcatgaagctacgctatccgcatttgccctgcttgcaagtgggccaggagcacaagcacacctatctaccccttgaagtgtgtaacattgtggcaggacagcgttgcatcaaaaagctgaccgatatgcagacatcaaccatgatcaaagcgactgcacgctcagcgcctgatcgcgagcgtgagattaacacgctggtgaaacgtgcggacttcaacaatgatccctatgtgcaagagtttggtttaaccatctcaaattcaatgatggaggtgcgtggacgtgttttaccgccaccaaagcttcaatatgggggacgtgtgtcatcggggataaccggacaacagctgttgccgccacagaacaaggtcagcttggcatctccaaatcaaggcgtttgggatatgcgtggcaagcagttctttacgggcgtcgagattcgaatttgggcaattgcctgttttgcaccacagcgcacagtacgcgaagatgcattgcgtaactttacgctgcaactgcaaaagatctctaatgatgctggcatgcccatcattgggcagccctgcttctgcaaatatgccaccggaccggatcaagtggagcccatgtttcgctatttgaagatcacgttccctggattgcagcttgtggttgtcgtcctaccgggcaaaacaccagtatatgcggaggttaagcgtgttggcgacacggtcctgggaatggccacgcagtgtgtccaagctaagaatgtcaataagacctcgccccagactctctcgaatctgtgcctcaagatcaatgtaaaactgggcggcattaattcgattttggtgccatccatacgacccaaggtcttcaatgaaccggttattttcctgggtgccgatgttactcatccgccagcaggagacaacaagaaaccgtcgatagccgctgtggttggctcaatggatgcccatccatcacgctatgcggccacagttcgtgtgcaacagcatcgccaggaaatcatacaggagctgagcagcatggtgcgtgaattgttgataatgttctacaaatccaccggcggatataagccgcatcgtatcatactctatcgtgacggtgtctccgagggccagttcccacatgtgctgcagcacgaactaaccgccatacgtgaggcgtgcatcaaattggagcgggaatacagacctggcattacattcattgtggtccagaagcgtcatcacacgcgactcttctgcgccgagaaacgcgaacagagcggcaaatcaggcaatattccagcgggcaccaccgtcgacgttggcatcacacatcccacagaatttgatttctacttgtgcagccatcagggcatacagggtaccagtcgtccctctcactatcatgtgctctgggatgataatcactttgattctgatgagctgcaatgcttaacttatcagctatgccacacctatgtccgttgcacgcgttctgtaagcatcccagcgccagcctactatgcacatctggtcgctttccgtgccaggtaccatctggttgaaaaggagcacgattctggcgagggatcacatcaaagcggctcatctgaagatcgtacgcccggtgccatggcacgcgccataacggttcatgccgataccaaaaaggtcatgtactttgcctaagcagtaaaacaaaaagcgaaaccaaaactacaacaaaaacaacaacaaaacagcaacaccaacaacaaactgaaatttcgaaatttagttcgaataagcaaaatatgaaaaaatatgtacgaaagccaagtcgaaatcattagagaataatttcaaaatgatgttttttatatatttaagttaaagaaagccagaacattagcttttaggccacacacacaaacacacaacacccacacgccaaaatcgtagggattagaaaacaaaagggaatcgaatgtttaagcacaagcaggcgcaacaaatgtgaaagagaattctcaaaaaaaaaaaacaaaattttataataaaaagcgtagcgaaacaaactaaagggaacaaacgaaagtcaaatacaacaacaacaaaaacagctgaaacaacaacacacatttgcgatgaacttttgtaatagaattaattatatttttacacaaaacaaaaaagaaaaaaacaaagttaaaaaaatgtgaagacaaacaaaatgcagacaaccaaaggtttttagtatatcaaaacaagaaaaaagttgctgattcagacataaacacaacacacacacatacaacacatacaacaacaaccataacaacttggaattctctgtactgtgaacgaagaccaccaacaaaagcttacaaactaaaaaaaaaaaaacaaaatcaacaaaaaatgacaaaattaacaacaaaaatacgacaagcattaaagagagtgtaatacttagccataacaaataaagtgaaaagaaaagttcaatacaactcaaaagtccagaattgtaaaaaggcaagctttttagtagacttaagtggggaactaccaaaaacaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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