2024-03-29 02:01:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_022555525 11827 bp mRNA linear MAM 16-SEP-2019 DEFINITION PREDICTED: Delphinapterus leucas argonaute RISC catalytic component 2 (AGO2), transcript variant X7, mRNA. ACCESSION XM_022555525 VERSION XM_022555525.2 DBLINK BioProject: PRJNA407951 KEYWORDS RefSeq. SOURCE Delphinapterus leucas (beluga whale) ORGANISM Delphinapterus leucas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022098049.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Sep 16, 2019 this sequence version replaced XM_022555525.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Delphinapterus leucas Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11827 /organism="Delphinapterus leucas" /mol_type="mRNA" /isolate="GAN/ISIS: 26980492/103006" /db_xref="taxon:9749" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..11827 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111165164" CDS 205..2289 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X7" /protein_id="XP_022411233.1" /db_xref="GeneID:111165164" /translation="
MRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 235..387 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 388..750 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(544..546,589..591,631..633,643..645,697..699, 718..720,724..726) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 883..2160 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1294..1296,1306..1308,1342..1353,1360..1362, 1384..1386,1393..1395,1405..1407,1417..1419) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1498..1500,1504..1506,1714..1716,2128..2130) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
tgaattggatatcaagccagagaaatgcccaagaagagttaacaggtggagctggaggtcacgttgccaggagaagggaaggaccgcatcttcaaggtgtccatcaagtgggtgtcctgcgtcagcttacaggcattacacgatgcactttcggggcggctgcccagcgtccccttcgagacgatccaagccctggacgtggttatgaggcatctgccgtccatgaggtacacccccgtgggccgctccttcttcacggcgtccgagggctgctccaacccgctgggcgggggacgagaggtgtggtttggcttccatcagtccgtccggccttctctttggaagatgatgctgaatatcgacgtctcggcaacagcgttttataaggcacagccagtaatcgagtttgtgtgtgaagttttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtcaagtttaccaaagaaatcaaaggtctaaaggtggagataacgcactgcgggcagatgaagaggaagtaccgcgtctgcaacgtgacccggcggcccgccagccaccaaacgttcccgctgcagcaggagagcgggcagacggtggagtgcacggtggcccagtactttaaggataggcacaagctggttctgcgctaccctcacctcccatgtttacaagtcggacaggagcagaaacacacctaccttcccctagaggtctgtaacatagtggcgggacagagatgtataaaaaagctgaccgacaatcagacctcaaccatgatcagagcgactgccaggtcagcccccgatcggcaggaagagattagcaaattgatgagaagtgccagttttaacacagatccgtatgttcgtgagtttggaatcatggtcaaagacgagatgaccgatgtgaccgggcgggtcctccagccgccctccatcctctacgggggccggaataaagcgattgccacccctgtccagggcgtttgggacatgaggaacaagcagttccacacgggcattgagatcaaggtgtgggccattgcgtgcttcgccccccagcgccagtgcacggaggtccacctcaagtccttcacggagcagctcagaaagatctcgagagacgcaggaatgccgatccagggccagccgtgcttctgtaaatacgcccagggcgcagacagtgtggagcccatgttcaggcacctgaagaacacgtacgccggcctgcagctggtggtggtcatcctgcccggaaaaacgcccgtctacgccgaggtcaagcgtgtaggagacacggtgctggggatggccacgcagtgcgtgcagatgaagaacgtgcagaggaccacgccgcagaccctgtccaacctctgcctgaagatcaacgtcaaactgggcggcgtgaacaacatcctgctgccccaggggaggcctccggtgttccagcagcccgtcatctttctgggggcggatgtcacacacccacctgccggggacgggaagaagccctccatcgccgccgtcgtgggcagcatggacgcccacccgaaccgctactgcgccaccgtgcgcgtccagcagcaccggcaggagatcatccaggacctggcggccatggtgcgcgagctgctcatccagttctacaagtccacacgcttcaagcccacccgcatcatcttctaccgagacggcgtctccgaggggcagttccagcaggttcttcaccacgagttactggctatccgagaggcatgcattaagctagaaaaagactaccagccggggatcacgttcatagtggtccagaagaggcaccacactcggctcttctgcaccgacaagaacgagcgggtcgggaagagcggaaacattccagcagggacgaccgtggacacgaaaatcacccacccgaccgagtttgacttctacctgtgtagtcatgctggcatccagggaacaagcaggccttcccactatcacgtgctttgggatgacaatcgtttctcttccgatgagctgcagattctcacctaccagctgtgtcacacctacgtgcgctgcacgcgctccgtgtccatcccggcgccagcatactatgctcacctggtggccttccgggccaggtaccacctggtggataaagaacacgatagtgctgaaggaagccatacctccgggcagagtaacggacgagaccaccaggcgttggcaaaggcagtccaggtccatcaggacacgctgcgcaccatgtactttgcttgacatgttttagtgtttacgattgtgtaccgagttggattcacatgagaccagctacactcagaccaacaaatgcccagcccttccgtgacagccagcatcgaacatgaaacgccattgattttagtagattctccactttccagaatgccttccgtcccagatttcaaacttggattttgaactgcagacctgtatgagaccccattgtcgtaggaaatatggtttgccaaaatcttataagctgcttatgaaaatagagtcccgtgtttcctaaaaatctcctaaaaccagtctatgaactcagggctttaaaacatttttaatttatttggtcgttcgatttacttgtttttaacacatgattctatatgaaattgatgggctcaaactagctgtgaacgttctgtgagagtgaaagcaacataaaacacattgtggttttaaagccttgaacattctgatgctgtcactaaagtttatttcagagtgacacctgtgtgctcctgaccagctgtccgggatccgagggcaggggccaggcgaggcgccctggtgtctctcgttctgccactgcccgcctttcactcagcccgaaggaaggaggggtggcagaaggtgggccgtgtgtgtttacaacatttataggtccagagggattggcagacaagtgccattttaataaaaatttatttaaaaaaagaaaaaagacaatatgccgacagtctaatcataagatttgtcctgtaggactgtgacgtttatcttccaaagtttctgaagaatacgggtctgtggtgataaatacagtacaatcctttttcactgttatgtctttaatgtaagagaaaagtatatatatctggtttgcagtattaatgtgatagatagatgctgtttttcattttactgactacggggtgcttttgtgatctgtttagcatatcaagagtgttttggagcctggagcctggaccacccttgtggtttctcagtgcttaagtacaggagtatgcaattgactcagtgcccgcggcccaccccctcgtgtagaccgcgcagcctggaccctcaggaggacggagtgtgcttccagcagtcactcccctccccgcctcatccccgtgtgtcgctcagccaattaagcacaaatggaatgtatgtatccttccgctcctgggaatgagtctgcgtgtcggcgtgcacttctctctgcgtgtggtttgttagacaagcgtcataggatctatgcactgaaacacagagaaggctgtcggtggtggcgctctgcgggctgcgaggcccgcgttccgcgaaggagcccagccctcgggaggatggctgatggcgaagccagcagcagaggcagacccttctgctaggatttgcgtgctgggccccggacgtgggtttgccaatctagaatccattgcactaagaatgataccgtggacagctcgacagggctaacagcagagagctccgtttgtgctcagtgggcttttggtccttgtaggcggttttctgagaatccaatccacgttcagtacagagattctaggaaggagatgagcctttccctagtgctgcttcgtgctctgtaggtttcctctggccctgctgacggccctcccatcccggcctgacattacctctggcactgtggtggagtgagggtcccaaccagggtgcctcgtgctggggtcagcgcccgcctcggtcttgtgtgagggctccgcgggggcagggaagcgctgtcatggacactcggcctggattttggcggcaacgacaaaggggtgactattatttgtgacaatatatactcaagagtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcatgtatgcgcgcgcgcgtgtgcgtgcatgtgggtgtctaataatggcattagtctcttcttgctgtatcatttttttttttatgtctttttaaatgacagaagcctctgctctaaaaatgttgcaattccctgtcattttgttagcaagtggcactttctctcgttcagaaggataccagtacactcttggcttaagttaccgggagcattcaagctaaggagggaaccttttcactaatacacttttaaaatctgaacttaggttagttttcagtcatttttaggatcatctagaaccgtgtgtctcgaaggtatgtttctaccacttgcaacaggatctcggtggtcggggcattggccgtaaaaacgctgtgactcctgtgctcgctgcggcctctggggtggcggctgggcatctgcgttttacaccatcagctgggggtccagggctgcctggagtccgagaacctctaatctagagccttctggagagtgtgctccctcaagcactgagggcccagcagggagggactccccagcaatgcagggaaacgttttctaaacgaatacactgggcaggatcacaggctggcagaaaatgagacctaaatttttaaaaaatcgttttgaaggaaaagttttctttctagagggccaaagtactttgagaaaagtacttgttacagccctgcgcttgttttataaaacttttactacttaaaagcattcataaaccaaatgtctccagctgggttagctgcatacctttgtacatgtctgatggttcagaattcaaatggctgtagttacaatttctcaggtaaagaactgttttcccaaatttctaccaatcccccccccccgccccattattaggataaattttgagacagcgtaaaacctcaaggtgcagtagaataagtccaagccctgttcacgtggaagccaagagaggccctgcccgttctgtgtgggtcacgcccgcccagggcaacctcgtggccgcccgagaagggctccgggcacctccggcctctgcctgcgtttgacgggtttcctgaggcctgtgcggggctgtacaaattgcagaggtgcccactcgccggctttgcctgaccccactaagtaaggtgtgccttgctttaagcaaactgaatgtgaaaattatgaagtagaaatctggattaatttcaaagaaaaactgggatttatctcttcagaagaggtctcccaattagacccttatcctggtactcttcctaatatattttaaactattcaccgtaagaaaagttaacatattcccatcccttcaccacttcctattacgttcgacaagctctcaccctaatagctaagcgatgaaagaaaccccggggagctgctccaagtcgccgttttgtaggagagccctttggccctgctgagattccatcctgctgtttgtgtacttagtataataagctcagatgttcctagttcagataaatgttgtaaagctgggcatacctatacttttagaaagggattgttttattttggttttggttttctgttttgagaagacttcacatatacacttgatactacattttagggcctgctttctcttttcaagattgtgttgctttttggtagtgtcctcacactcccgtgcatgaatgtttgcactctagaaccacgagcgatccctggccactgcgccggcttccccaggagggacttgttggaagtggagtgatttccgtgctgtgtgagtctggccgtaagcagtgctgttgtgatgtttaccccggcgtgtgctcattagaagagacagttgaagttcaattcctgcagcagggttgtgggcgggtgggtgtcgatgttatattgtttgttatttttattgttgttaaatgcaaatgttgctatttattgtttcctttctgctctggtttcatttggctgatacggatattccagtgcatgtggtacctgatgaatatgatagaaattcttttccccaacttttataaattacctaatgtttacctgcaagtttgctggatgatttatttttgaaagccacaagtgtaatttttctggatgaattgtttttcttagatatgcggcaatgtaatttaacattgatctgcagggtgacttaaattttatttttacaaggcagtttttcagtcagattatatatttgatacaatatgttaagggtaggccagccaagcgttgtgcagttgggacaccagactgtctcgaggaggcctctggaggctggggcggcttctcttggttgcttggcgtcgtggaagcactaggctgtttcatggagccacccgtcaggatctggatggagtccttgagtgggactttgatctgttgggcagttcaaaggatttttcatgggcattttcctacacctaaggcagttccattaggaggagctttagacgttgacataatccagacagtggacaatcccagtggcccagacaagccatagaaatttccctgtgacctctctttaactcatctctcaaacgctcatgagaaaaggaatgtacaatgaatagaaacttcctcagtgttcatacgcctcactttcagaatgcaaatactttgtattttaagccctcccccaaaggaaccaagaatattctctctagctgccgtgccagcagtttcggctgctgtgacgtttctcagtgtagacacagtgcacgtgtgacttcgtaatagggctgtccgtgttacacacacatgctgacttcttttgtaaggaaaattttcaactcgaaataattgcactgattttttgacagcttcctttttattatgtccaactttgcatctgctgtacttgtttgaaatgattgtaaatagatttaggatagcagaaatgatgtaatacaatgcgttgctttgttttagtgatcctgccacgtttttcagtattatgtgttagagccgtgtgggctggccgctgcccttccccctctacagccatgtgtatgtgtgtgtgtgttgaccattcatgaaggacagattagcctcgttgctgtctttttctggaaggaagtttgcagtgtattggaagaagagtgtgctctctccttgcggtctgagatttaattccaagaggattaattgtaaatcctttgaatgcttctggtctgtttaattcctcgttatttgccatgactccctaaagcatttgctgctagctccctccagcatttgacagcttggataggaagcatctgaacggccaatgttactagagagtcagggcctcccttgcttctctttggtcacccgtcatttgaaagccatgaggtcgctgttatgtcagaactgtcatttgtggcttaacccataggtgccaggcagacctgaaaggcaggctgttcctttaggcctcgtgatttggccagatgagaagaagtgtgtgctccagtccacagtgtgtaagttctgtctgtgatcaggttacacagtatcagacacacaaaggagcttttacacccaaaccagccatctgagtgtgtgttagtgtcacgtcgatgccacctcggtgccctcacttagtgcttttttggatcttttgccattttattgtctaaagtgaatgtattggcttagccatatcactacagaaggtggtttctaataccttttagtttaaaaataaataaataaacgcagataaaggctacctctgaattctcaatagattcatgtttgcttttaagtgtagctatccacactgaaaatagccaaaatgttgcctgaatcaactgaattgtgaacatctctctgttcagttctggcttgaaaatttgtgtgccatactgtgacccacgggcagtcccctcctccctctctgggtgtccagggtggaccagggactcctcagggctgcccggctccgagatgttaggactctcagtggccagcaggaaggaaacacaagggcctttctgcaccgtcctcaggtgcagggccgtgtgtggtgggacctggaagcgacccgctgtcctggcttttcactttcctgtttgacataaggaagcactttttttttctgctttacttatgaatgggttgaaagtgtctccttctactctcttctccctttttgtacactctgtaaaaatcacaaaggtgcttaaacaccgactcttgtgcaaatagtacttcagtagctgcatggtttcaaaatgcagtgcagatgtcgtcgacctttgacttgggagccttgagttactaatgactctatacttgagagtgagctaaggtttgaaagcaaaatgttctgttcaaatccaaggccctttgcttgaaaggagcacagggtccagggcggcagcgtcctgaagtaggggttcctgctgctggcgccctggaccaggatgccagcctgcgggaagactggcctgggagagctcggcatcacgtgtcatgaaccactttgctgtcagaaatctcatctgctcgcacgctgctgtgggttggtcagtgtcgcccccctgctccttcgcgtcttttctttaggttcctcatgttctctcgtcttcagaaggtgagcttttgctcccgatcacttgcgctggtttgctcctgagttctggagggacagttgggcggtgttgcagttgcaggcgtctgggtgtgaggaggcggctccgctctcttctgggcgctcatcagaccttgactttggcccagagagtttccaggtgcaccattacgaggaagtccttgccttcaacgctgcatgctgcgctttaattccgaaagcgccaagtgtcctttgcagtctaagaatgtgtaattctgcagtcgtgctgtcctatagacacagaccaccctgagaagcgtggacactggggagcgtccgctacctctgctggcctgcttctggggttgctgggctccgctgaagtggcctcattttcagccagaaacccatacagggctttttgggggccgctgcgcggcggccggctcctcgctttagtgatgtcagccgttgactcagatctcccacctgctttctgcactcatgtccccagcgtcccgacgtgggcctcccccggcatctttgcgttcacgaaagataattaaagatgagggaactgaagattactggtgcttttgttaatacttttctgtcttattggttgatgtgaaaaattcaggtgcgttagatctttaaacgcccttggtggtgtgactgtaggcttgggtcctcacctcaccccccttctttaggcggttggaggaggctgaatgatctcctagttacaacttccttggcctcaagtagttcagagttaaagctacaacaccaaatattgactctccaggagctcgatgttcaggccaacctcatttggtacttctggaatcttcaaggtcctcaaaaccatgagttgatgctaggaatgtgccccctcgccgcccaccaccacctaccgggctgggggtggggggtgcgatgcgggtgggctgcccggccccgccggacggaactgggaggcccagggctcctctggactctggagatgctgggaacgatgctggggggtgggagagggcagcccctctgacccaaggggcaggcggtgcccaggcctcccctggtctccagaggccaggggtgccagactgaatgtgttctggagaccccgtctcagcctccgtgcctttcaagtccagtcctcagtgtcctttcgaaaccacggtgtggctgcgttgttgggaaggaagcctggcccggcgcacgctcaggcaccggcgctctgccttggaagccgcaccgctcctcggcttctgggcactggctcctgcgggaaatcgctgggttctggccgcgtggctcctcccaggcccagagcacgtccgtccacaggacccctctcctagtcgggtgctgaccgtgaccgccggcaaacctggggggtttgttctcaaggtcactcaatgagaatgttgagcgtaatggaactagattgttttcaaaaaggaattggaattggagtcgtgtctttgtagaatgcgtgggaagtcctcagatgtcaggtgccatttcagttgttggagtgccccgcgttgttgttgttttgtgacgtgctgggaaactgcttcctcgcgagtggtgtcacctggagctgtgcacgtaggactcgggttttgacgtctcgaagatgcaggttttagctctgacttttccaagccaggtattgagttgagcagttttcttggccgacggtctagttaaaagccactcagaattctctgtcagtggatggttttaagcgggggaaataacccaatgttacttattttaaactgtctagaaaagccttcaaggtggcagctcttggcccttctgtctccccctatatcctctgttctgaaaggcagaggcaccaggcaccgggggggctgcgggcggctttggggggccgtaacacagcgatgacgtgggctcctcttcaaagccaaacagacacgcggctaaaatcctggaagtctgcggtttagcactgaactgaaatccgcctcccaagtttgatagtggattttacacgtagttgttgaaggtataaattcatgttttgtaactgtagcggcaagtgagtttttactttttaaaaagttttaagggaataattgtaagtttctgtgcagcaaagtggctaattattcattaaatacaagaatgtagtgtctaaatccagattttttcttacctctggtacattcagattacttacctaatatgtattgaggggttttaaccctgagttttatcgacttttctagttttattttatttttataaaataattgaaaaaaacaaaaatgaattcaaaagttccataggtagatcttgccccttcttaattttctcccacaaaaaaaattttagaagacattttgaatcaaaatgtattatgaccatttaaagtttactgttttctaagaagctgagcagctaaagggcctcatttcaggtggtactgtgcgtactgtctgcggactcgtttacctgtgcggtgggtctacgtgacgatgtcttgtgcttgcaatatagaaaccgtgcagtgctgttgtgtacattgacagttcctgtataaactagtatttatatacattggcctctctgtataacttttcgtttgcttacatgaattgtaaaattaaatataaaattatagtacctgctaaatacaaatctgaggcttcctgtccttgtctttagtttaataccattctgtgtgttttgaggatgtccaatgcttgcatgatggtaggtggtaatgccactttaaattaagccttaatcagatgttaaatttgtaagtttcacagtatgcaaaaatattaggcagaatgagtttaaactgttcagatcaagatgctatatcataactcaacaagtcttttctccggagttataaagggaaactttcagtgatacagctctgtcttgctctctcgctctctctctctcgctctgtttctggtctggcttggctgttgccattgcttgatgaaaatggaccattgtgcatttctgtggcagtcagtcaaaaagacctgttctgaaagtcttgagactttttcagggttattttgaaatgtttgattttttttttt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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