2024-04-18 15:05:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021213200 2596 bp mRNA linear ROD 18-JUN-2019 DEFINITION PREDICTED: Mus pahari distal-less homeobox 3 (Dlx3), mRNA. ACCESSION XM_021213200 VERSION XM_021213200.1 DBLINK BioProject: PRJNA387191 KEYWORDS RefSeq. SOURCE Mus pahari (shrew mouse) ORGANISM Mus pahari Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_034603.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus pahari Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2596 /organism="Mus pahari" /mol_type="mRNA" /db_xref="taxon:10093" /chromosome="14" /sex="female" /tissue_type="tail" gene 1..2596 /gene="Dlx3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 7 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:110332143" CDS 205..1068 /gene="Dlx3" /codon_start=1 /product="homeobox protein DLX-3" /protein_id="XP_021068859.1" /db_xref="GeneID:110332143" /translation="
MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESTVTDLGYYSAPQHDYYSGQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGGSYRQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARNPLPPPLPYSASPNYLDDPTNSWYHTQNLSGPHLQQQPPQPATLHHASPGPPPNPGAVY"
misc_feature 283..525 /gene="Dlx3" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD:432536" misc_feature <529..876 /gene="Dlx3" /note="Homeodomain-containing transcription factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature order(592..606,610..612,661..663,679..681,718..720, 724..729,736..741,745..753,757..762) /gene="Dlx3" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 598..759 /gene="Dlx3" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(598..600,607..609,727..729,736..741,748..750) /gene="Dlx3" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
agcatttgactgtggcttgggacgcggagagaggcacgcagcgactgaccgacggccggcgatggtctaagcgcccctcggccaccccctcccccagacgcgaccgcgtcctgccctcgccctctggacacacaccccacctgggctcctccgcccgttcggtgctcctcggaggaggcccggggtgttgcggcgctcgccagcatgagcggctccttcgatcgcaagctcagcagcatcctcaccgacatctccagctcgcttagctgccatgcgggctccaaggactcgcccaccctgcccgagtctacggttactgacctgggctattacagcgctcctcaacatgactactactcgggccagccctacggccagacggtgaacccctacacctaccaccaccagttcaatctcaatgggctcgcaggcaccggcgcttactcgcccaagtcggaatatacctacgggggatcctataggcaatacggagcgtaccgcgagcagcctttgcctgcccaggacccagtgtcggtgaaagaggagccagaagccgaggtacgcatggtgaacggcaagcccaagaaggtccgaaagccgcgaacgatctactccagctatcagctggctgccctgcagcgccgtttccagaaagcccagtatctggccttgccggagcgcgccgagctagctgcacagctgggcctcacacaaacacaggtgaaaatctggttccagaaccgccgctccaagttcaaaaagctctataagaatggggaggtgcctctggaacacagtcccaacaatagtgactccatggcctgcaactcaccgccgtcaccggcactctgggacacatcttcccattccacgccagcccctgcccgcaatccgctgcccccgccgctcccatacagtgcctcccccaactacctggacgaccccaccaactcctggtaccacacacagaacctcagtggaccccacttacagcaacaacctcctcagccggctaccctgcaccatgcctcccctgggcccccgcctaaccctggggctgtgtactgagtacccacctggcctgcgcccctccacgaaggaccccctccaggaacaggcagaaggtgccctgtcctagtgacactcaggaatcattgaggggcacaggggaaagactcccttccttctcctttgtcccttctcccaggggcccaacaacctccagatgacaaatgcatggaccgaggatgcccccccaaacaatctccctccccttgcttagactggggtgccctccagacagcgaggagttccactccagtggggacagcacatgctctctgctccaggaaccaggattgtctctagatggttcatcaccttccaacttttcaaacacagtagagatctccaaaatgggagagccagagtgtttgcaggtccacctgtgctggggcaccaggcgccaccggattccagcatggccagacctaaagcaccaggggcaactacacatccttgagccattctttaaagacgttggacattacatcatggctgatcctcaagatgggggcagggggctgacctagtccccactgttctccagccctcattaggatttgagggtcaaaccgaagaaaactcccccaaattagggaacctttgatatccagggcttccaagggaagaattaaaggagccatccctccgccccttccctggggaaaaggactgcccatgtccttttccaaggacctgtttctccttccatgtacaggactttgcacaagtcaggttttaaaagctgttgaaacctaggacaacaacgggcattgttaacagttaggaccaaatccactcctctctgggtgggcagctctgctctgccctgaccctgcttacccctttggtttttgttttgtttgtttttttttttttttctcccagtaagtttgcagtcttgggggatggggtcaaaccctaactctctacagagatataccaggcaagacaacccccccccaacactcccttcgtggcagctttggaaacaggttgtccattctgctgcaggattcaagtgaggatccaggaaacaagaggagacccagaactcagtgccttaggggtaaggctggcggcttggaccctggtaccagtgtctctccctggcccaggcattcccccaaagctaactttcttctgccccctgatgtggtaaaacatcgaagaaaggagaggtgaaagactgtagttatatatatatatagtatggttttttttgttgtttctttctttttttttttttttaaagagcaaccaagagaaacagtcccctcccttgtggtttcctatttatgtgaccctgttcctcctggaccaatctccctgtgtgttgcaagccgaaagagggatgtgggctcctgctggatttgggtttcctgggaagtgaaggagtaaggagagacagccgctgtgggtctctgagtcccaccccaaagggacaggaatgaagccagctcccacccctccccagccttctcatttctgctttcttactggaacagtctttatatataatgttaataaaaat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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