2024-04-18 18:29:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021183054 11177 bp mRNA linear ROD 10-JUN-2019 DEFINITION PREDICTED: Mus caroli argonaute RISC catalytic component 2 (Ago2), mRNA. ACCESSION XM_021183054 VERSION XM_021183054.2 DBLINK BioProject: PRJNA387030 KEYWORDS RefSeq. SOURCE Mus caroli (Ryukyu mouse) ORGANISM Mus caroli Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_034584.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jun 10, 2019 this sequence version replaced XM_021183054.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus caroli Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11177 /organism="Mus caroli" /mol_type="mRNA" /db_xref="taxon:10089" /chromosome="15" /sex="female" gene 1..11177 /gene="Ago2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 mRNAs, 35 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:110310268" CDS 166..2748 /gene="Ago2" /codon_start=1 /product="protein argonaute-2" /protein_id="XP_021038713.1" /db_xref="GeneID:110310268" /translation="
MYSGAGPVLASPAPTTSPIPGYAFKPPPRPDFGTTGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 184..2742 /gene="Ago2" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1342..2619 /gene="Ago2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1753..1755,1765..1767,1801..1812,1819..1821, 1843..1845,1852..1854,1864..1866,1876..1878) /gene="Ago2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1957..1959,1963..1965,2173..2175,2587..2589) /gene="Ago2" /note="active site" /db_xref="CDD:240015" ORIGIN
gctcccgccgcctccgcccgccgccccggccgcgtcgggtaaacctgttctgcgaggcggccgcgccggggcggatcgagcggccggcggctcctcgcggctcgcggcgtcggggcccgtggagcgcgcggccggccctcggccgcggccctcggcaacgccaccatgtactcgggagccggccccgttcttgcttctcctgctccgacaacatcacccatcccaggatatgccttcaaacctccacctcggccggacttcggcaccaccgggagaacaatcaaactacaggccaatttctttgaaatggacatccccaaaattgacatctatcactatgaattggacatcaaacctgagaaatgccctcggagagtgaacagggaaatcgtggagcacatggtccagcactttaaaactcagatcttcggggaccggaagccagtgtttgatgggaggaagaatctgtacacagcaatgccccttccgattggcagggacaaggtggagctggaggtcacgctgccgggagaaggcaaagatcgcatctttaaggtatccatcaagtgggtgtcgtgcgtgagcctgcaggcattacacgatgcactttcggggcggctgcccagcgtccccttcgagacgatccaggccctggacgttgtcatgaggcacttaccatccatgaggtacaccccggttggccgttccttcttcactgcgtctgaaggctgttccaaccctctaggtgggggcagagaagtgtggtttggcttccatcagtccgtccgaccttctctttggaaaatgatgctgaatatcgatgtatcggcaacagcgttttacaaggcacagccagtgatcgagtttgtttgtgaagttttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaatcaaaggtctaaaggtggagataacgcactgtggtcagatgaagaggaagtaccgtgtctgcaatgtgacccggcggcctgccagtcaccaaacgttcccactgcagcaggagagtgggcagacagtggagtgtacagtggcccagtacttcaaggacaggcacaagctggttctgcgctacccccacctcccgtgtttacaagtcggacaggagcagaaacacacctacctacctttggaggtctgtaacatagttgctggacagagatgtataaaaaaattaacagacaatcagacctcaaccatgatcagagcaactgccaggtcagcacctgatcgccaagaggagatcagcaaactgatgcgaagtgcaagtttcaatacagacccatatgttcgtgaatttggaatcatggtgaaagatgagatgacagatgtgactgggcgggttctgcagccgccctccatcctctacgggggcaggaacaaagcaattgccacccctgtccagggtgtgtgggacatgcgaaacaagcagttccacacaggcatcgagatcaaggtgtgggccatcgcctgcttcgccccccagcgccagtgtacagaagtccatctcaagtccttcacagagcaactgaggaagatctcgagagatgctgggatgccgatccagggtcagccctgcttctgtaaatacgcacagggtgcagacagtgtggagcccatgttccgacacctgaagaacacatacgctggcctccagctggtggtggtcatcctgcctggcaaaactcctgtgtatgcggaagtcaagcgtgtgggagacacagtgctggggatggccacacagtgcgtccagatgaagaacgtgcagaggaccacgccacagaccctatccaatctctgcttaaagatcaatgtcaaactgggaggcgtcaacaacatcctactgccacagggcaggcctccagtgttccagcaacctgtcatcttcctgggagccgatgtcacccacccaccagctggggatgggaagaaaccttctattgctgccgtcgtgggcagcatggacgcacaccccaaccgctactgtgccaccgtgcgtgtgcagcagcaccgacaggagatcatccaggacctggctgccatggtacgagagctgctcattcagttctacaaatctacccgcttcaagcccacccgaatcatcttctaccgagatggcgtctccgagggccagttccagcaggttctccaccatgagctcctggccatcagagaggcctgcatcaagctggagaaggactatcagccagggatcacgttcatcgtggtgcagaagcggcaccacacacgcctcttctgcacagacaaaaacgagcgggttggaaagagtgggaacattcctgcaggcacaaccgtggacacgaagatcacccaccccactgagtttgacttctacctgtgcagtcacgccggcatccaggggacaagccgtccttcccactaccacgtgctttgggatgacaatcgtttttcttctgatgagctgcagattctgacctaccagctgtgtcacacctacgtgcgctgcacacgctctgtgtcaatacccgcgccagcttactatgctcacctggtggccttccgagccaggtaccacctggtggataaagaacatgacagcgctgaaggaagccatacctctgggcagagcaacgggcgagatcaccaagcgctggccaaggcggtccaggtccaccaggacacactgcgcaccatgtactttgcttgacctgttgtattgtttagcgattgtgtaccaagttggattcacacgagaccagctacactcagaccaacagatgcccagcccttctgtgacagccagcatcgaacatgagacgtctttggttttattagatcctccgttttccagaatgccttccgtcccagatgtcagacttggattttgagctgtaggcctgtatgagaccccagtgtaggaaacatggtttgccaaacctataagctgctcactgagagtcccgtttcctaaaaacaaaacaaaaaaacaaaacaacaacaaaatgtcctaaaaccagtctatgaactctcagggctttaaaacattttaatttatttggtcatccaatttacttgtttttaacacctgattctcaatgaaatcgatgggctccatctagctgtgaaggctctgagcatgaaagccacaccatttccattggggttttaaagcctggccctaagaagttgtcactaatgttgagttctaagggatgccatgcgccctgcagccccagggcgtatggctgctaggtctccacagtgtctctcgcggccactgcctgccctcgaggcctgaacaaaggcacagtggccaaggagatggtcacgtgtgtttacggcagtgacaagtccgagagattggcagacaagtgccattttgataaaaatttatttaaaaagagaaaaaaagacaatatactgacagtctaatcataagatttgtcctgtaggactgtgacatttattttccaaagtttctaaagaatacgggtctgtggtgataaatacagtacaatcctttttcactgttaatgtctttaatgtaagagaagaatatatgtatctggtttgcagtattaatgtggtaggtagatgctgtttccctttcgttgatgaggggcgcttctcgtgacctgcttcacatatcaggagctgtgtgaagcctggagacagtccacctcttgtggcttttagtgcttaagtagaggaatatgcaactggcttcacgtaccagcgatgccccctcctccctccccacccccagtgtggactgtgtagcctgtacctccggaaggacagtgcgcttgccagtaacctgccgtcctccctgcctcgtccatgtgtgtcgctcagccgatgaagcacaaatggaatttatttattcttccattgctgggaaacaagttcacgtaagagtgcacttctctcagtgtgcagttatggaaggtgggtttcataggatctatgcactgaagtggaaagagagctgcccatagcggctctgccagcatgggactggcaggtaggaatggactgtgcccgaggacctgactgtgggcaaggccagcagggaaggcacagactttctctgggtgttatttgcttctgggccccagtgtgggttttccagcccagagaccattgaactgagaaggggccactacgaatggctctgcggatggcagcagccacgtcagtgtgtgtgtccttgtggggctctctgtgcttgtcccgaagctgagcgagcatcgggctcactccgttccacatacgcgtgcgttcccggaaggagatgagccttctcttgtgtgctgctctgtgctctgtgggttttttctacccctgctgatgggcctcatcccccagctctgcgtcatttacctctgaccctgcggaggagggagggtgcccaccctctccccctgccgtggcacctcatgctagaggacacagtaccacctttgccccgttccccatcttctctggagctggtgggaagggcagacgcagttacctgggaagtcacaccctcagcaggtgtgtgtatccgtgtatgcatgtgggtgtcttactaatgacaatagtctcttcttgctgtgtctttagaaatcttttaaagtaacagacccccccagtctaagaagcactgggactgcctgctatcccattggcaagtggcaccttctcaaactgtttccaaaacgatataaaaacactcagttggcctaacatggtcaggctggggaactggttaaactagtgaacttttagaatctgaaattggattgttttcaaccattcttagaaccagtgtgtttctaaggtgtgtcttcagccccttgccatgggatcttagtcatgcaagtgagttttttagaatgcagattctcaggcctgctgccagcttcttggatctggcactgtgtttgaggccacccctcaacccccaccgtggctctgtaggctttctgaggccgtccccccttatgccagggggacaggaaggaacccctatcagagctcacacctaggaacacttgtgggctggggcaaaaaaatcttgagctgggagttttgttttgatcaccttgaaggataggttttctttctgatgggccaaagtactggacgagaagtgttttctgtaggagcccacgcttacttgtgacacttttaataggaaatgtatccccagaccaaatgtccctaattgagttagatgcacaccatccacatgtctgatggtgcagagcttataaatggctatagttccaatttctcaggtaaataattgttttccccaatttctgccctccccttattaatattagtttgagacagtgtgagacctcagagtgcggtagcagctccggccatcttctgcaggagccagctttttgtgtgtatctgtacccaagactggtgacaggtgccattttctcctgaggtgatacctggccaagtttgacgactgcccacttgctagctgtgttcccaaccccactgttaagtaaggtgtgccttgctttaagcaaactgaatgtgattgtgttgtgtgtgctctgtatccatttggaaggaaaactaggatgtgcctgtctctttaagagaggctagccaattagcctctcatggtgggactctcctagtacactgtaagatactcttaaaaaacccatcgtgacatccatccctttaccactgtgtgcaccatgcagcaggtccctccctccccatgctcatgaagcaatgcaaaactctagagagacatcgaggccccattccatagatttagccctagtgatactagcaaaactcccaccctgtcactgcgtgttttaagcccagattctcctagtccccatcgagtctgaaaccgagcacgcctgtacttcttgtcaggggctgttgggttttggcttccttctcccatttggggaagtcctcacatgcacacttgataccactttgggtctgctctgccttctccagatttggcctcttggccactcctcacacccacccgcttgctggcctccaggccacagggcactgccagtgaggagactgctagctccgtgctgtctgcagctggcccaacttctgtattcctaatgtttacctgttactgagcgcttgatagaaagacgggcccctgcagcgggcttgggcgggtttggttttttggttttggttttccattgtcttgttcttgtgttattttattggttttaaatgcaaatgttgctatttatttttttctctctcctgctctggtttgactaagctgatctggctatctcaatgcatgtggtacctgatggatggatatggtagagattatttcccccgccttttataactggcccggtatttaccttcaggcttgctaatgctttatttttggaagccacagatgtagtttttctggatgaattgcttttcctatagatgcagcggtatgcttttgcattgatctgcagggtgatttgaattttatttttacaagcagtttttcaatcaaattctatatttgatacaatgtgttaaggctagaccagcccgaagtcatgcagctggggacccctgagtgtccaggaggccttagggctgggtggcctctcttggtagtccctgtggtggtagcactggtcacaggaacctgcagggtcttcattatggccctgacctcgtagattgttacaaggattttttttcatgggcattttgctacacagacagtggacaatcccggtggccccagacaagccataagcaacctttctgtgacctctccctgactcatctctcacacccatgataaaaggaatgtgccctgagtagaagctacacttccttggtgttcatctgcctcacttgtgaatgcagatattttgtttgttttaagcccttccctgcagtaaccatgctggctggctctcacataggcagagcacacgtgactcttgtcatgagcgccccgttgcaggcatgccgactcctgtaagttgcactgatctctcgacagtttcctttattgcgtccaactccccatctgctgtactcatttgaagtgattgtaaacggattcacagtggcaagagtgacgttgatgtgggacattgcctcacttctgccatcccaacacacatttcagtattacgtgctcgagtgtgcgggctgggctcttactctctcaagcattgtgggctagccttgtctcaacactctgacaagaagttctccctctctatacaggacagcatgctctttgagacctgaaggcttgaatgtaaacaggttagttagaagtctttgtggcgctttggtctgtttagttttcttgtgatctgcaaggccccccaaaagtatgtccttctagttccgtgtggcctttgtcagcgtggacagcatatgaatagcccagtcagtgttaacaggccattgctacattctttggccagcccctcaacttaaagttgtgaggtcactgctgtgtcagactgtcatttgtggtccatccatgggagacctaaagcctggtgcagccctttatgccttgtgaccctgctgggacctaagtgtacatgatctgtttagccccacatggactgtctgtagtcagggtgcccagagtctgaaacaaaaggaattattacacttaaaccgcgcagggggacgacacacagacagacagtgccattgcagacattgcagagccctccctcaccttgtgtctttggatttgttcagccattttatttgtctcaagttgaatgtaccggcttagccaaatcactacagaaggtggtttctttaaaccttttagacagatgcataaaagctacctctgacttctcatagatttgtgtttgctctgaagcatcgctatccacactgaatatagccaaaatatcgcctgaataaaccgagttacgaactcctctgttcacttctggcttgaaaatgtgtgagtgccatactgtgatctgaggcggtggcttctctgctgccactgacccagggactcctcagcaccacccagctacaagatcctagcgtctgagaggctggtagacgggcttctctgcatggggaacatgcaccctccaggctggtgggcgtgactgcgcaaggccacgtgcggctgagcctggaggtggtctgttcctgcctggttttgctttcctatttaatagtgtaagaaggcatctttacccctgctttgcttctgaatggattgaaagtggctttcctgctctctcctccctttttgtacactataaactcataaaggtgcttcaacaccgactcttgtgcagataatgtagttaagcagttgcatggattcagatagtgcaggcacagctgaccttgggaccctggtgaaagtgaaggactgaaagccctgagctccatttggagggagcagtgggctctgcttgactaggtccctttagcgttggcagaacagagatttgtcatggggacccgccacctctgaccaagctgtcctgtggctgtccactttgctgtccaggaggtcatcctcttacatcatggctccacctgcattgccttggcctctccacctaaagtttccttggaaagtcagcataagatcccagattcccctgtttagcttgagggacagatggacagtgtcatgaaggcaggtgcctggggattgggctgggcttaggggagctcttctaaaggttgtctctgtgccctccccaacctcccccacatacaccccccattgtattgttttggggggtgtcatcttccattcttttgacttggacagctcagtacccttaagagccctcacacatttctctgtgtagagaacctgaggcgtggagggtggtggggtgtctgcaacacccctgacctgcaccccaggtttcttaaatcctctgacttggctggaatttgaaaatccagggaagcacagggtgctagatatgttacacttagggtcacacccaggtgccgtggtgtaagccacagccctcagggcaccagcacagaggcagccagcctccccactcgtgacatttgggaaggataccaaacaagccagagccctggctgctgcagtattcagctaacacttccttttcctggttgaagggagaacactatttgaaaccttctaatgccctggtggttctagttcctctgttcctgagggctaaaaggttgaatgagctcctgttttgcttagagctgcctttgagtccatttaaaggtgaagcatgggactgtatcctcttccctgagtcaccagcaagtaggtgtggagacccttctcattcagttctttctgcatcttcaagcgccccaacatcagtgggatcacaagagcacccacaccagccatcagcggagtcaagtatacatatggggacagaaattggcaaatttacaggttgtaatggccactccagcttgtgacagggaaggccctccatcctgcacagcaggtggccttggtcctacctccaggcactggctttactatctggacacctagtctcacacttgagagccttgaaagtctgttcttggtgtccttctagaatcatgctgggacaggtcattagttgaccctgcccagaagctctgtcagccctcagctctttcttgcaaactgtgatgccaccttgtagcctatggctgtggagccccgtcctgggttctttgtgccctgaaatacaggtgcacctctgctgggggttggttgggcactggcaaaggctacttgctggtcttgtgttctctgcccctcagcaagactgtctgttgtagtggaagtaggtttagagggatttggaatcatgtctttgtgaatcgagtgtgacgtcatcaggggtaaggtgctacttggtcctaatgttttggaatgcttttccgtcttgttactccattgttactctctgttctatgacactggggagactgctcacttaggtgtggtgtcacataggactccagctttgatgtgctgtgcgggtggtgtgattatcatctctgaccttctcaagccaggggtggtacccttccctagcttagtctaattaaatctttcctccctgtcaagtgattgctttgggtggttttaacaggagtagtccagtctggttattctattttcttaataacatagaaaaggcccgtgcagcactagctgcagacagataacatatttaacaattttggttcatcttcaaagccaaatagacctatgtgattaaactccaagagggtacaattcagcattaaattaaaatttgagtcatgaatttgagagggaatttcagtatagttgataaagttatgaattaatgttttataattgtagtggcaagtgagtatttataaaatttataagagaataattgtaagtttctgtacaacaatttggctactgcctcataaaaacaggaagagaccatagccctgaatctgactctcttatctcccacatactttggattatctgcctaatatgtatttgaggggttttaacccttggttttatcaaattttctagttttattttatttttataaaataattgaaaaagaaccaaaaaggaatccagaagttccccagcggctcctcccccagtcttaattccccctacacacacattcaaatgttttagaagacattttgaatcaaaatgtattccatccatttaacgtttgctactttctgagaagtggagtggctacaagggcctgtttcaggtggtactctgtatgtcatggacatgtttgtacctgtacagtggatctgtgtgacgacgtcttgtgcttgcggtttagaaaccacgcagtgctgttttgtaaattgacagtttctgtgtaaactattatttatatcccttggcccttctgtataatttttcatttgctacatggattgtataattaattataaaattatagtacctgctaaacccaattctgaggcttcatgtcattgtctttggtttgataccagtctggatcgggaggctgcccaggccttgcgcaataccagtagtgatgtcacttaaagttaagccttaatcagataatgaatttgtgcatttcagagtatgcaaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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