2024-04-18 04:31:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021178982 3695 bp mRNA linear ROD 10-JUN-2019 DEFINITION PREDICTED: Mus caroli NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X2, mRNA. ACCESSION XM_021178982 VERSION XM_021178982.2 DBLINK BioProject: PRJNA387030 KEYWORDS RefSeq. SOURCE Mus caroli (Ryukyu mouse) ORGANISM Mus caroli Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_034581.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jun 10, 2019 this sequence version replaced XM_021178982.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus caroli Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3695 /organism="Mus caroli" /mol_type="mRNA" /db_xref="taxon:10089" /chromosome="12" /sex="female" gene 1..3695 /gene="Nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:110306852" CDS 45..3539 /gene="Nrde2" /codon_start=1 /product="protein NRDE2 homolog isoform X2" /protein_id="XP_021034641.1" /db_xref="GeneID:110306852" /translation="
MALFPAFADVSEASGDGASRKELDWLSNPSFRVGNLTSLSRQTEEVTALASEGSPPPRSPLKSELSGESDTSEKLAQISRKKKKEKKKRRKHQHHRKTKRRHEHSSSSGSESDTEAGKDRASRSIRDSHKEAEKPCQGSNAAAAAAGHRSIWLEDIQDLTDVFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASAAKKPSHRHLERYFTKKNVGLMRTEGIAVCSNPEPASSEPVTFIPVKDSAEAATPVTSWLNPLGIYDQSTTQWLQGQGPAEQESKQPDSQQDRESAALKARVEEFNRRVRENPRDTQLWMAFVAFQDEVMRSPGIYALGEGEQEKHRKSLKLLLEKKLAVLERAIESNPGSVELKLAKLQLCSEFWEPSALAKEWQKLLFLHPNNTSLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSMLSHPVLPGTEEAMFGLFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVTPDEDDEEPEEEDQEIKDKTLPRWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPDLQFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSIFESELYDEKPLTYFNPSFSGISCVGSMEQLGCPRWTKGHNREGEEFVRNVFHLVLPLFAGKQKSQLCLSWLRYEIAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSMAGSSELKDRELCELSLLYAGLEMELSPDSRGATTGRAVHILTRLTESSPYGPYTGQVSSTQVLKARRAYELALQDCLGQSCASSPAPTEALDCLGSLVRCFMLFQYLTVGIDAAVQIYGRVFAKLKGSARLEDPGPEDSTSSQSLTNVLEAVTMMHTSLLRFHMNVCVYPLAPLRETLSDALKLYPGNQVLWRAYVQIQNKSHSANKTRRFFDTVTRSAQHLEPWLFAIEAEKLRKKLVESVQRVGGREVHATIPETGLTHRIRALFENAIRSDKGNQCPLLWRMYLNFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED"
misc_feature 531..818 /gene="Nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(531..554,561..566,576..581,585..587,591..635, 642..650,654..662,684..692,702..707,711..716,723..743, 768..779,789..818) /gene="Nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 984..1982 /gene="Nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
acggcgccatttctgaggcaggagtggaggtgcggcctgtgatcatggcgctgttcccggcttttgcggacgtaagtgaggcctccggtgatggggcatccaggaaagaattagattggctgagcaacccaagctttcgtgttggaaatctaacttctctgagccgacaaactgaagaggtcacagcccttgcttctgaagggtcaccaccgccaaggagtcctctgaagtcagagctctcaggtgagagcgacacgagcgagaagctcgcacagataagcaggaagaagaagaaggagaagaagaagaggcggaagcatcagcaccacaggaaaaccaagaggaggcatgagcattcgagcagcagcggctctgagtcagacacagaggctgggaaggacagggcttcccgaagcatcagggacagccacaaggaagccgagaaaccctgtcagggaagcaacgcggctgctgctgctgctggacatcgttccatttggctggaagatattcaagatctgaccgacgtcttcaggactgataagaaaccagatcctgccaactgggagtataaatctctgtatcgtggggatatagcaaggtacaagaggaagggagactcctgcctgggtatcaatcctaagaagcagtgtatatcttgggaaggggcttctgcagcaaagaaaccctcacacaggcacctggagcgctattttaccaagaagaatgtggggttaatgagaacagagggcattgctgtgtgcagtaaccctgagcctgcctcctccgagcctgtcacattcatcccagtgaaggactctgctgaggcagctactcctgttacatcatggctgaatcctctggggatttatgatcagtctaccacacagtggttacaaggacagggtccagcagagcaagagtcaaagcagccggactcgcaacaggacagggagagtgctgctctcaaggccagagtggaagagtttaacagaagggttcgggagaatcctcgggacacgcagctatggatggcgtttgtggctttccaggacgaggtcatgaggagtcctggcatctatgcccttggggaaggagaacaggagaagcacaggaagtccctgaagctcctcttggagaagaagctggctgtgctggagcgggccatcgagagcaacccaggcagcgtggagctgaagctcgccaagctgcagctgtgctccgagttctgggagcccagtgcgctggccaaggagtggcagaagctcctcttcctgcaccccaacaacaccagcctgtggcagcgctatctctccttttgccagagccagtttggtaccttttctgtgtccaaactccacagtctgtatggcaagtgcttgagtaccttgtctgctgtgaaagatggcagcatgctatcccaccctgtgttgccgggcaccgaggaggccatgtttgggctctttcttcagcagtgccactttctacggcaggctggccactcagagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtgaaagagctgcctactaaagtacaggtggaattctttgagcccttctgggacagcggagagccacgcgttggggagaagggagcccgaggctggcgggcatggatgcaccaacaggagcgaggtggctgggtgcttgtcaccccagatgaggatgatgaggagccagaagaggaggaccaggagataaaagacaagaccctgcccaggtggcagatctggcttgctgttgagcgttctcgagaccagaggcactggcgtccctggcgccctgataagaccaagaagcaaacggaggaagattgtgaggaccctgagagacaggtgctgtttgatgatattgggcaatctttgatcagactttccagcccagaccttcagttccagctcatcgaggcctttctgcagttcctaggcgtgccttccggcttcctgcccccagcctcctgcctttacctggccatggacgagagcagcatctttgagagtgaactttatgatgaaaagcccctgacttacttcaacccttccttttcgggcattagctgtgtcggctccatggaacagttgggttgccctcgctggaccaaaggccacaaccgagagggcgaggagtttgtccgcaatgtcttccacctggtgctgcctttgttcgcaggcaagcagaagtcccagctctgcctctcgtggttacggtatgagattgcaaaggtcatttggtgtctacacactaaaaagaagcgattaaagtctcagggaaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaacaacttctgcctctggaagcagtatgcacacctggagtggttgctcggtaacacagaggatgccaggaaagtgtttgacacagcactcagcatggcaggcagcagcgagctgaaggaccgtgaactctgcgagctcagtctgctctatgctgggctggagatggaactgtcgccggactcgagaggagccaccacaggccgagcggtccacatattaacacggctgacggagagcagtccctacgggccctacacggggcaggtctcgtccacccaggtgctgaaagctcggagggcttacgagctcgcactgcaggactgcctgggccagagctgtgcctccagcccagctcccacagaggccttggactgcctgggtagcttggtccgatgctttatgctcttccaatatttgactgtgggcattgatgctgctgtgcagatatatggaagggtgtttgccaagctgaagggctctgctcgcttagaagacccagggccagaggacagcaccagctcccagagtttgaccaatgtccttgaggctgtcaccatgatgcacacaagcctgctgcgattccacatgaacgtttgtgtttaccctctggctccactccgagagaccctctcagatgctttaaagctgtatccgggcaaccaggttctttggagggcttatgtgcagattcagaacaagtcccacagtgctaacaagaccagaaggttctttgacacagtcacgaggtctgcccaacatttggagccttggctatttgcaatcgaagctgagaagctgaggaaaaagctggtggaatctgttcagagggtaggcggcagagaggtccatgcaacaatccccgagactggccttacgcatcggatcagagctttgtttgaaaatgcgattcggagcgacaagggcaaccagtgccccctactgtggaggatgtatttgaattttttggtttccttaggaaacaaagaaagaagcaaaggcgtgttctacaaggccctccagagctgtccttgggcaaaggtgctatacatggacgccatggagtatttcccagacgagctgcaggagatcctggacgtgatgaccgagaaggagctccgtgtgcgcctgccccttgaggagctggagctgctgctggaggattagtgcacagccaggcctgggccagcctgcagatcccggagccgtggctgtgcaggcttcactgtcctgctggggttggacgtattgacttacatattatatatgtgatctctatgtacaagtggagtcgtgccagtgataaaccttttgtggttgcca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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