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2024-03-29 14:36:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021178287            2578 bp    mRNA    linear   ROD 10-JUN-2019
DEFINITION  PREDICTED: Mus caroli distal-less homeobox 3 (Dlx3), mRNA.
ACCESSION   XM_021178287
VERSION     XM_021178287.1
DBLINK      BioProject: PRJNA387030
KEYWORDS    RefSeq.
SOURCE      Mus caroli (Ryukyu mouse)
  ORGANISM  Mus caroli
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_034580.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mus caroli Annotation Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Mus caroli"
                     /mol_type="mRNA"
                     /db_xref="taxon:10089"
                     /chromosome="11"
                     /sex="female"
     gene            1..2578
                     /gene="Dlx3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 7 Proteins"
                     /db_xref="GeneID:110306101"
     CDS             206..1069
                     /gene="Dlx3"
                     /codon_start=1
                     /product="homeobox protein DLX-3"
                     /protein_id="XP_021033946.1"
                     /db_xref="GeneID:110306101"
                     /translation="
MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESTVTDLGYYSAPQHDYYSGQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGGSYRQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARNPLPPPLPYSASPNYLDDPTNSWYHTQNLSGPHLQQQPPQPATLHHASPGPPPNPGAVY"
     misc_feature    284..526
                     /gene="Dlx3"
                     /note="Homeobox protein distal-less-like N terminal;
                     Region: DLL_N; pfam12413"
                     /db_xref="CDD:432536"
     misc_feature    <530..877
                     /gene="Dlx3"
                     /note="Homeodomain-containing transcription factor
                     [Transcription]; Region: COG5576"
                     /db_xref="CDD:227863"
     misc_feature    order(593..607,611..613,662..664,680..682,719..721,
                     725..730,737..742,746..754,758..763)
                     /gene="Dlx3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    599..760
                     /gene="Dlx3"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(599..601,608..610,728..730,737..742,749..751)
                     /gene="Dlx3"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      
agcatttgactgtggcttgggacgcggagagaggcacgcagcgactgaccgacggccggcgatggtctaagcgcccctcggccaccccctcccccagacgcgaccgcgtcctgccctcgccctctggacacacacccccacctgggctcctccgccggttcggcgcttctcggaggaggcccggggtgttgcggcgctcgccagcatgagtggctccttcgatcgcaagctcagcagcatcctcaccgacatctccagctcactcagctgccatgcgggctccaaggactcgcccaccctgcccgagtctacagtcactgacctgggctattacagcgctcctcagcatgactactactcgggccagccctacggccagacggtgaacccctatacctaccaccaccagttcaatctcaatgggctcgctggcaccggcgcttactcgcccaagtcggaatatacctacgggggatcctataggcagtacggagcgtaccgggagcagcctttacctgcccaggacccagtgtcggtgaaagaggagccggaagccgaggtacgcatggtgaacggcaagcccaagaaggttcgaaagccgcgaacgatctactccagctatcagctggctgccctgcagcgccgtttccagaaagcccagtatctggccttgcctgagcgcgccgagctagctgcacagctgggcctcacacaaacacaggtgaaaatctggttccagaaccgccgctccaagttcaaaaagctttataagaatggggaggtgccgctggaacacagccccaacaacagtgactccatggcctgcaactcaccgccctcaccagcactctgggacacatcttctcattccacgccagcccctgcccgcaatccgctgcccccaccgctcccatacagtgcctcccccaactacctggacgaccctaccaactcctggtaccatacacagaacctcagtggaccccacttacagcagcagcctcctcagccggctaccctgcaccatgcctcccctgggcccccgcctaaccctggggctgtgtactgagtacccacctggcctgcgcccctccacgaaggaccccctccaggaccaggcagaaggtgccctgtcctagcgacactcaggaatcattgaggggcacagggggaaagactccctctcccttgtcccttcttccaggggcccaacaacctccagatgacaaatgcatggactgaggatgccccccaaacaatctccctccccttgtttagactggggtaccctccaggcggcgaggagttccaccccagtggggacagcacaggctctctgctccaggaacctggattgcctctagatggctcatcactttccagctttttaaacacagtagagacctccaaaatgggagagccagagtgtttgtgggtccacctgtgctggggcaccaggcgccaaggattccagcacggccagatctaaagcaccaaggggcaactatacattctttaagccactctttaaaagacattggacattacatcatggctgatcctcaagatggggggccctgacctagtccccactgttctccagtcctcattaggatttgagggtccaaaccaaagaaaactcccccaaatgagggaacctttgatatccagggcttccaagggaagaattaaaggagccatccctccgccccttccctggggaaaaggattgcccatgtccttttccaaggacctgtttttccttccatgtacaggactttgcacaagtctggttttaaaagctgttgaaacctaggacgacaacgggcattgttaacagttaggaccaaatccactcctctctgggcgggcagctctgctctgccttgaccctgctcaccccttcgttttttttttctcccagtaagtttgcagtcttgggggacgggctcaaaccccaactctctacagagatagaccaggcaagacaccccccctcagacacccccttcgtggcagctttggaaacaggttgtccgttctgctgcaggattcaagtgaggatccaggagacaagaggaggcctagaactcagtgccttaggggtaaggctgtcagcttggacagctggtaccagtgcctctccctggcccaggcatccccccaaagctaactttcttctgccccctgatgtggtaaaacattgaagaaaggagaggtgaaagactgtagttatatatatatagtatggtttttttgttgttgtttctttttttttttttaagagcaaccaagagaagcaggtccctcccttgtggtttcctatttatgtgaccctgttcctcctggaccaatctccctgtgtgttgcaagtcgaaagagggatgtgggctcctgctggatttgggtttcatgggaagtgaaggagtaaggagagacagacagacgtggtgggtctccgagtcccaccccaaagggacaggactgaagccagctcccacccctccccagccttctcatttctgctttcttactggaccagtctttatatataatgttaataaaaattaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]