2024-04-26 02:32:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021159525 4127 bp mRNA linear ROD 10-JUN-2019 DEFINITION PREDICTED: Mus caroli protein argonaute-4 (LOC110292285), transcript variant X1, mRNA. ACCESSION XM_021159525 VERSION XM_021159525.2 DBLINK BioProject: PRJNA387030 KEYWORDS RefSeq. SOURCE Mus caroli (Ryukyu mouse) ORGANISM Mus caroli Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_034573.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jun 10, 2019 this sequence version replaced XM_021159525.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus caroli Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4127 /organism="Mus caroli" /mol_type="mRNA" /db_xref="taxon:10089" /chromosome="4" /sex="female" gene 1..4127 /gene="LOC110292285" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:110292285" CDS 244..2829 /gene="LOC110292285" /codon_start=1 /product="protein argonaute-4 isoform X1" /protein_id="XP_021015184.1" /db_xref="GeneID:110292285" /translation="
MEALGPGPPASLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRIDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKHPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPSQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEIAQELLYSQEVVQDLTSMARELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKMERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 319..708 /gene="LOC110292285" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 739..891 /gene="LOC110292285" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 892..1254 /gene="LOC110292285" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1048..1050,1093..1095,1135..1137,1147..1149, 1201..1203,1222..1224,1228..1230) /gene="LOC110292285" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1393..2700 /gene="LOC110292285" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1804..1806,1816..1818,1852..1863,1870..1872, 1894..1896,1903..1905,1915..1917,1927..1929) /gene="LOC110292285" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2008..2010,2014..2016,2254..2256,2668..2670) /gene="LOC110292285" /note="active site" /db_xref="CDD:240015" ORIGIN
cggcggcggcggcggcggcggcggccgggattgtttttgttgtcgctgaggccggaagagccgctaaagagccgggtccctgtccccggactgggcgccgccgccgccccctgcccagcgcccgcgtcttcgcggcgccgcttcagcgccaatattccggagagcaagcgttacgctgcggcggcggcggggcccggagcgggaggcgctgggggccggagcgaggcggcccccgtcgccgccatggaggcgctgggacccggacctccagccagcctcttccagccacctcggcgtcctggccttggaaccgttgggaaaccaattcgactgttagccaatcattttcaggttcagatccctaaaatagatgtgtatcactatgatgtggatattaaaccagaaaaacggcctcgtagagtcaacagggaggtggtagacactatggtgcggcacttcaagatgcagatatttggagatcggcagcctggttacgatggcaaaagaaacatgtacacagcacacccactgccaatcggacgggataggattgatatggaggtgaccctcccaggtgagggtaaagaccaaactttcaaagtgtctgtgcagtgggtgtcagttgtgagccttcagctgcttttagaagctttagcaggacacctgaatgaagtcccagatgactcagtacaagcacttgatgtgattacaaggcatctcccctctatgaggtacactccagtaggccggtcttttttctcacctcctgaaggttattaccaccctctgggagggggcagagaggtttggtttggctttcatcagtctgtgagacctgccatgtggaatatgatgctcaatattgatgtatctgcaactgctttctaccgggctcaacctatcattgagttcatgtgtgaggttttagacattcagaacatcaatgagcagacgaaacctctaacagactcccagcgtgtcaagtttaccaaagaaatcaggggtcttaaagttgaggtgactcactgtggacagatgaaacgaaaatatcgagtttgtaatgtgacaagacggccagccagtcatcaaaccttccctttgcagctagagaatggccaagctatggaatgtacagtggctcagtattttaagcagaagtatagtctgcagctgaaacacccccaccttccctgccttcaagtggggcaagagcaaaagcacacctacctaccactcgaggtctgtaatatagtggcaggacagagatgtataaagaagctcacagacaatcagacatccaccatgatcaaagccacggcaagatctgctcctgaccgacaggaggaaatcagtagactggtgaagagcaacagcatggtgggtggacctgacccatacctgaaggaatttgggattgttgtgcacaatgagatgacagagctcacaggcagggtgcttccggctccaatgctgcagtatggaggccggaataaaacagtagccacacccagccagggtgtctgggacatgcgaggaaaacagttttatgctggcattgaaattaaagtatgggcagtggcttgttttgcgcctcagaaacaatgtagggaagatttgctaaagagtttcactgaccaacttcgtaaaatctccaaggatgcagggatgcccatccagggtcagccatgtttctgcaagtatgctcaaggtgcagacagcgtggagcccatgtttaaacatctgaaaatgacatatgtgggcctgcagctaatagtggtgattttgcctgggaagacaccagtatatgcggaggtgaaacgtgtcggagatacccttctaggtatggccacacagtgtgtccaggtcaaaaatgttgtgaagacctcgccccagaccctttccaacctttgcctgaagataaacgcaaagcttggagggattaacaatgtgcttgtgcctcaccaaaggccctcagtgttccagcagcctgtcatcttcctgggagcagatgtcactcatccgcccgctggggatgggaagaagccttctattgcagccgtggtgggcagcatggacggccatcccagccggtactgtgccaccgtccgcgtacagacatctcgacaggagatcgcccaggagctcctctacagccaggaggtcgtgcaggacctgacgagcatggctcgggagctgctgattcaattctataagtccacgcgcttcaagcccacacgcatcatctactaccgcggaggggtatccgagggacagatgaagcaggtagcttggccggagctaatagcaattcgaaaggcatgtataagcttggaggaagactatcggccgggaataacctacattgtggtacaaaagaggcaccacacacgactcttctgtgcagacaaaatggaaagggtggggaaaagtggcaatgtcccagcaggcaccacagtggatagcaccatcacacatccatctgagtttgacttctacctctgtagtcatgcaggaattcagggaaccagccgtccttcacattaccaggtcttgtgggatgacaactgcttcactgcagatgaactacagctactgacttaccagctctgtcacacctacgtgaggtgcacgcgctccgtctccattcctgcccctgcatattatgcccggcttgtagcattccgggcaaggtatcatttggtggataaagatcatgacagcgcggaaggcagtcacgtgtcaggacagagcaacggccgggatcctcaggccttggctaaggctgtgcagatccaccacgatacccagcacactatgtattttgcctgagagtcttggaaaagaactcaacaaagttggcatctcacacatcctcaaaatgtttccgaagcctaatgcctctcttagtgccacaatgacttcaggcggtccctaccagcagctcaggatggttgcactgcgtctgctctgcagccctgtctgatagatacatcaacaaaactgagccatttgggttttttttttttttttttgttaaagaaatagatactcatggattatgttttctgatgcactgggcagaatttttacctcaacgtgcaaaggctgatcagccttgactttctaaaggactttccaagaagggtttctatggaatcttttgctagctgtggtattcaccgcatctagtcttataagaggagcatttccttttttctgtgtttattgaatggtgtgcataagtgggagagagaagccaaacggcctgtatcatctccatgtaactttttaattgggtccatagacctcttactttggactttgccactgtcaatgcctttaaggattatcagtttttgaaagttttacagaactctgttaccttcactgctctactgatctcttcgggcctgcactgtggggtacaggctgcccggcaattgcactatatttggctgcagattcgaacaggcagtttccttacttgactggcttttgtgagtctgtgacataagcagatgtgatgtgtgtcacagggacagatgacactgccatggtaaaaagtacccatgttctccatatttggaaaaagagaattagcttttagtatttttccacatcttcaaaagtgcccattttatgctgctgtgtggtgtgttagatctgaacgatctttaaacttctctcatagaaagttaactttggcaataagcatttgtaaggcccttgccctttctcctgacatagttttctagatgagatttcagtatgattttatcaactatttcttacatatcataactgggatattctgaaaccagtttataaagacacagatttcaatgtccttttaaataattgtttttaaaacaaaacgtattttatagtcagagtcctgtcactttaaaaaaaaaaaagaagaagctggaaccaggatgctttgtgatcggtcaggctttgccaatgtataaggcacattgagcagtactgcacttgaaaagaaagtaccagccagtgaaaacctagtttctctgggaatcaggggtgcgcacacggctgcctacaagacagcctgaaatgtgcttggtggctctgcctttctctttttcaactaaaactctgtagaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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