2024-04-26 13:51:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_020648066 2950 bp mRNA linear VRT 23-MAY-2019 DEFINITION PREDICTED: Labrus bergylta protein argonaute-2 (LOC109994634), mRNA. ACCESSION XM_020648066 VERSION XM_020648066.2 DBLINK BioProject: PRJNA379987 KEYWORDS RefSeq. SOURCE Labrus bergylta (ballan wrasse) ORGANISM Labrus bergylta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018114712.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 23, 2019 this sequence version replaced XM_020648066.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Labrus bergylta Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2950 /organism="Labrus bergylta" /mol_type="mRNA" /db_xref="taxon:56723" /chromosome="Unknown" /sex="female" /tissue_lib="Muscle" gene 1..2950 /gene="LOC109994634" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:109994634" CDS 198..2810 /gene="LOC109994634" /codon_start=1 /product="protein argonaute-2" /protein_id="XP_020503722.1" /db_xref="GeneID:109994634" /translation="
MYSSTGASEMAEGPRSSGSASSEPPSSPVPEYVFKPPSRPDFGTMGRTIKLQANFFEMEIPKLEVYHYDIDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVYDGRKNLYTAMPLPIGRDKVELEVTIPGEGKDRSFKVSIKWVSCVSLQALHEALAGRLPSVPFETVQALDVVMRHLPSMRYTPVGRSFFTPSEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFMCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTIECTVAQYFKDKYKLILRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQDEISKLMRSANFNTDPYVREFGVMVRDEMTEVNGRVLQAPSILYGGRNKAIATPIQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTELLLKAFTDQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKYTYQGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQVKNVQKTTPQTLSNLCLKINVKLGGVNNILLPQGRPLVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQQHRQDIIQDLATMVRELLIQFYKSTRFKPTRIIYYRDGISEGQFNQVLQHELLAIREACIKLEKDYQPGITFVVVQKRHHTRLFCMDRNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNHFTSDELQVLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDQQALAKAVQIHQDTLRTMYFA"
misc_feature 504..728 /gene="LOC109994634" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 756..908 /gene="LOC109994634" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 909..1271 /gene="LOC109994634" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1065..1067,1110..1112,1152..1154,1164..1166, 1218..1220,1239..1241,1245..1247) /gene="LOC109994634" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1404..2681 /gene="LOC109994634" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1815..1817,1827..1829,1863..1874,1881..1883, 1905..1907,1914..1916,1926..1928,1938..1940) /gene="LOC109994634" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2019..2021,2025..2027,2235..2237,2649..2651) /gene="LOC109994634" /note="active site" /db_xref="CDD:240015" ORIGIN
tggggccgtgccgaggatgagacactccaaatatttaccacttggctaactaaatatctttatttctgaactgggcttcctccattgctcttgttcatttacatacttttcgaccacgtatgagtttcggtgggatttcgcctgaataaagtggagtgttcgtaggtccacgacacacgcttaaaaaagtcgacaaaatgtattcctctactggagcctctgagatggccgagggaccccgttcctctgggtcagcaagctctgaacccccatcttccccagtgccagaatatgtgttcaagcctccatcacggccagactttggcaccatgggcaggacaatcaagctccaggccaacttctttgaaatggagatccccaaactggaggtctaccattacgacatcgacatcaagcccgagaaatgccccaggagggtcaatcgtgaaattgtggagcacatggtccagcactttaaaacacagatctttggtgatcgaaagccagtgtatgacgggaggaaaaatctctacaccgccatgcctttacccattggccgagacaaggtggaactcgaggtgaccattcctggcgaaggcaaagaccgcagcttcaaagtctccatcaagtgggtgtcctgcgtcagcctgcaggctctgcacgaggctctggcgggacgactgccaagcgtcccgtttgagaccgtccaagccctggatgtggtcatgagacatttaccttctatgaggtacaccccagtgggccgttctttcttcactccctcagaaggatgttcgaaccccctcggcggtggtcgagaggtgtggtttggcttccaccagtctgtcaggccttccctttggaagatgatgctcaacatcgatgtttcagccactgcgttctacaaagcccagccagtaatcgagtttatgtgtgaggtcttggatttcaaaagcatcgaggaacaacagaagcccttaaccgactctcagcgagtcaagtttacaaaagaaattaaaggcctgaaggtggagatcactcactgtgggcagatgaagaggaagtacagagtttgcaacgtgaccagaaggccagccagccaccaaacgttccctctgcagcaggaaaacggccaaaccattgaatgcacagtagcacagtacttcaaagacaaatacaagctcatcctgagatacccccacctcccgtgtctacaggtgggacaggagcagaaacacacctacctacctcttgaggtgtgtaacatcgtggcaggacagcgctgcatcaaaaagctgaccgacaatcagacctcgactatgattcgtgccacagctcgatcggcaccggaccgccaggatgagatcagtaaactgatgaggagtgccaacttcaacactgacccttacgtacgtgaattcggagtgatggtgagggatgagatgacagaagtaaatggcagagtcttacaagcaccttccattctgtacggaggcaggaacaaagcaatagccacaccgatccaaggagtctgggacatgaggaacaagcagttccacactggcattgagatcaaggtgtgggccatcgcctgcttcgcaccgcagagacagtgcactgaactcctgctcaaagcattcacagatcagctgaggaagatctcaagggatgcagggatgcccatccagggtcagccgtgcttctgtaaatacgcccagggagcggacagcgtggagcccatgttcaggcacctcaaatacacctaccagggcctccagctggtggtcgtcatcctacccggaaagacacccgtctacgctgaggtgaaacgtgtcggggacacggtacttggcatggccacgcagtgtgtgcaggtgaagaacgttcaaaaaacaacacctcagaccctctccaacctctgtctgaagatcaacgtcaagctgggtggtgtcaacaacatcctcctcccacagggcaggccgttggtgtttcagcagccggtgatcttccttggtgcagatgtgactcaccctcctgcaggagatggcaaaaagccttcaatcgctgccgtcgtgggtagtatggatgcccaccctagcagatactgcgccacagtgcgggtgcagcagcaccgtcaggacatcatccaggacctggccaccatggtgagggagctgctcatccaattctacaaatcgacccgcttcaagccgaccagaatcatctactaccgtgatggcatctctgagggccaattcaaccaggtccttcagcatgagctgctggcgatccgcgaggcctgcatcaaactagagaaggattaccagcctggtatcacctttgtggtggtgcagaagagacaccacacgagactgttctgcatggacagaaacgagagggttgggaaaagtggcaacattcctgcaggcaccacggtggacaccaaaatcactcatccatcagagtttgacttctacctttgcagtcacgctggaattcagggtaccagccggccgtctcattatcacgtgctctgggacgacaaccacttcacgtcagatgaactgcaggtcctcacataccagctctgccacacttatgtgcgctgcacccggtcagtctccatcccagcaccagcttactacgcccatttggtggctttcagggctcgctatcacttggtggacaaagaacatgacagcgccgagggcagccacacatcaggccagagcaacgggcgggaccaacaggctttggcaaaggccgttcagatccaccaggacaccctgcgcaccatgtactttgcctgagaccgcaaaaaccccggaggtcggcgtgggtgagaccccactgatgttacacactaccccctcgctgtctcaccgtcagctgtagatagcgccacagtggtgatctccctacatgagagacctatcagttgaccatgtgt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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