2024-04-19 11:24:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_020642258 7467 bp mRNA linear VRT 23-MAY-2019 DEFINITION PREDICTED: Labrus bergylta protein argonaute-3-like (LOC109990219), transcript variant X1, mRNA. ACCESSION XM_020642258 VERSION XM_020642258.2 DBLINK BioProject: PRJNA379987 KEYWORDS RefSeq. SOURCE Labrus bergylta (ballan wrasse) ORGANISM Labrus bergylta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018114593.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 23, 2019 this sequence version replaced XM_020642258.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Labrus bergylta Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7467 /organism="Labrus bergylta" /mol_type="mRNA" /db_xref="taxon:56723" /chromosome="Unknown" /sex="female" /tissue_lib="Muscle" gene 1..7467 /gene="LOC109990219" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns" /db_xref="GeneID:109990219" CDS 489..3125 /gene="LOC109990219" /codon_start=1 /product="protein argonaute-3-like isoform X1" /protein_id="XP_020497914.1" /db_xref="GeneID:109990219" /translation="
MEIGTTGDAGAQALFSLPRRPGYGTIGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDCLPVYDGKRSLYTATPLPVATGGVDLDVTLPGDGGKDRPFKVSIKFVSLVSWHMLHEVLTGRVMAEPVDLDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSSPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASLQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYESDPFVQEFQFRVRDEMAQVTGRVLPAPMLQYGGRVSSEPFMPQQINPALSLQNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYGGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTGDEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPTALAKAVQIHHDTLRTMYFA"
misc_feature 705..989 /gene="LOC109990219" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1017..1169 /gene="LOC109990219" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1170..1532 /gene="LOC109990219" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1326..1328,1371..1373,1413..1415,1425..1427, 1479..1481,1500..1502,1506..1508) /gene="LOC109990219" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1665..2996 /gene="LOC109990219" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2130..2132,2142..2144,2178..2189,2196..2198, 2220..2222,2229..2231,2241..2243,2253..2255) /gene="LOC109990219" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2334..2336,2340..2342,2550..2552,2964..2966) /gene="LOC109990219" /note="active site" /db_xref="CDD:240015" ORIGIN
caagagggcggtgtaagtgcagattttagaccggtttctcgccgataccgagagggaggacgctggactagtgaacccccgtcatatctacttgctaaagcagaacaccggatcgacacgttaacctgccgggacgacgaatttgactcactgttccgatacaacagcagaaactagagcggacgaaccaggggacgttttgcacaacttggagctgtcttttggttagtaaggcaggttcggcggaaaaagaggggggagacttccagccgagaggaaccccgagcggcccggttccacttcagcgacccgagccgggtggagcaggggggggcagcagcagagcagcagcagcagcagcagcagcagcagcagcgaggcccggggggagcagggggttgcctgtcagcggatctgaagtcacgttttgacctgcgaagggagaagtaacaactgggtgccgggtcatccggactgagacctcatgaatggaaatcggaacaacaggagacgctggagcccaagcccttttttcgctgccacgtcgacctggctatggcaccatcgggaagcccatcaagcttctggccaactgtttccaggtggaaattcccaagatcgacgtctatctctatgaggtggacatcaagcctgacaaatgtcctcgcagggtcaacagggaggtggtggactccatggttcagcattttaaggtgaccatctttggtgactgtctgccagtttacgatgggaagagaagcctttacactgctactccactacctgtggccactggtggggtggatctggatgtcactcttccaggtgatggtgggaaggaccgcccattcaaagtctccattaagtttgtgtctttggtcagctggcacatgctgcatgaagttttgacaggacgcgtcatggccgagccggtggacctggacaaaccgatcagcactaatcctgttcatgccgtggacgtcgtcctccgacacctgccctccatgaagtacacgcccgtcgggagatccttcttctcgtccccagagggctacgatcacccactaggtggaggacgagaggtttggtttggtttccatcagtctgtacggccagccatgtggaaaatgatgctcaacatcgatgtgtcagccacagctttttacaaagcccagccagtcatccagttcatgtgtgaggtactggacattcacaacatcgatgagcagccgcgcccactcactgactcccacagggtcaagttcaccaaagagatcaaaggtctgaaagtagaagtgacacactgtggaaccatgcgtaggaagtacagagtctgcaatgtaacacgacggcctgccagcctccagacatttcccctgcagctagaaaatggtcagacagtggaacggactgtggcgcagtactttagagagaagtacaacctgcagctcaagtacccccacctgccctgcctgcaggtgggccaggaacagaaacacacctacctgcccctggaggtgtgcaacattgtagctggccagcgctgcattaaaaagctaacagacaaccagacgtcgaccatgatcaaagctacagctcgctctgcaccagacagacaggaggagatcagcaggctggtgaggagtgcaaactacgagtcggatccgttcgtccaggagtttcagttccgtgttcgagatgagatggctcaagtgacgggccgagtccttcccgcccccatgctgcaatatggcggcagggtgagctctgagccatttatgccccagcagatcaaccctgcactgtcgttgcagaaccgcacagtggccacacccagccacggggtgtgggacatgagagggaagcagtttcacaccggagtggaaatcaagatgtgggccatcgcctgcttcgccacacagaggcagtgcagggaagagatcctaaagagcttcactgaccagctgcgtaaaatctcaaaggacgctgggatgccaatccaaggccagccatgtttttgtaaatacgcccagggagctgacagcgtggagcccatgttcagacacctgaaaaacacttacggcgggcttcagctcatcatcgtgatcctgcctggaaagacgcccgtatacgctgaggtgaagcgggttggcgacaccctcctcggcatggccactcagtgtgtgcaggtgaagaatgtagtcaagacgtctcctcagaccctttcgaacctctgcctgaagatcaacgtcaaactgggaggaatcaacaacatcctggttccacaccaacgaccctcggtgttccagcagcctgtcatcttcctcggggcggacgtcactcatcctccagcaggagacgggaaaaagccatctattgcagcggtggtaggcagcatggacgcccaccccagcaggtactgtgctacagtgcgggtccagaggcccagacaggaggtcatccaggacttggcatccatggtgcgagagctcttgatccagttctacaaatcgacccgctacaagccgactaggatcatcttctacagagacggagtgtcggaaggacagttcagacaggtgctgtattacgagcttctggctatcagggaggcttgcatcagtctagaaaaggactatcagccggggattacttacattgttgtgcaaaaacgccatcacacgcgactcttctgtgcagatcgcaacgagcgggttggacgaagtggaaacattcctgccggcaccacagtggacacagacatcactcatccctacgagtttgacttttacctctgcagccacgctggaatccagggtacgagcaggccctctcactaccatgttctgtgggacgacaactgtttcaccggtgatgagttccagctcctcacctaccagctgtgccacacttatgtccgctgcacgcgctccgtctccatcccagcaccggcctactacgcccacctggtggccttccgcgcccgctaccacctggttgacaaagagcatgacagcgcggagggcagccacgtctcagggcagagtaacggcagggaccccacggcgttggccaaggctgtccagatccaccacgacacactgaggaccatgtactttgcctgagcccccacatccctccatctactcggacagtcctagtgcccgccttccatcagctggctcatctcaaatgacgtgccccgactgttgcgactgcaggctgtgtaaggatgtaataagccagagaggagttacagccacattatgcaataagaaaccagccaatcgtttctgctctctctctcaccttcatctcctctgctgtattcagttcaaagtggattctgtctcctgttgacactcacacgtcacaacaacggcttccagttttcacagcagctcaaagtttctttttgctttcttttctttctttcttttttttttcacgtgttaagaaatggcagagcagcagggaatccaaaaacttgggcttgaagcagaaccagtgaggacccgcctcgctctgtcacctcacattgagcctcatgttgctggtttatagtgtagatggttttacatgtttgtttgtggggttttctgcttctttagatgcaaaattgtttgtgttgtttctctctatctctctatctctctcgagcaaatgtgtgattacaatggcagcatgttagtcaagtacgctcgtgacacagaagtttcgccctcttgctgcctttgtggttactcttctgtctccctttaagcccgtgggtcctctaccatcacagacagtgaatgatatctttattttattttacgcaaagccacacacagccatcgattgtgtatcgcatgaggccttactgcgaggcgaggtgcacaaacaggactgttagaatacaacgccatgaccacaaaatgaacaattttaaacttttttttcttctagttcagctcggtacaaagtgtaaaaaccaaacggtctgtgtgttttattcctcttactatttataccttctttaattctttttaacttaaactaacatccagcaatagttcagagcagacggattattaccacctcaaaacctttggacttctcccaatttttaaacgaggatctgaccaatgaagtcgtcacgttctccttcagtgcaataaggtgttagtgcagagcgagcagggtcagcgctgagtgttgtcgatgaggattggcgtgctgaaatagttttttttttttttggcaagttatgtgactttggatgaaggatgttcagtgtttggcattctgttgatcattaaggactgaggctgctgatgtgagcgtgtgtggctcagtcctgatgtcggacagtgtttggagagattccacaaagtgcctgaattgttggttagagattaagacgttggagggacagaaggtttttaactgtatgttggttcagttctctgtaaatgcagaatccgagtgagcctgtcaaaacattgcactgcccgacacatggggctggactgtagctgatctcgaagcatgagcgcgtattcctaataataatttcctctctcaccatgaggaaatactcactttcatatcctcttcaaactctttgtttccacaatattctgttatcaaaaacatttaatcatcgcacttaaaaaaacaaagcttatactaaagggctgcaacgattatgtcatttgttcactaattaattgctaacttttttgatatcttttaacctgagacatttttgaagaactctttgattccatgttaaagtgtaaggccctttttcatctatgacgggggggggtgggcggtgggaagaatagctttgataatatcactaaacgctgatggggttttaaaaatattaaagacatgacacagccgtatctacgtttttaacgcagcatcacaaaaaggaaagtttaggatcattaacaaaaacatttctcgttggagacgataaaagaatctcctcctgatcacaaaatgattgaaagcaaagttttcttctcaaacatgaattagtttgagcattttgttccaccgatcatcagcgaggatataatcatgcaccgcttcattgacttttgcttaaaagagattaatcaagtctagttgtatatttttctgtcgatcagttgtcgctctagtccagagacagaaccttttgtagacatgactttatataataaaagaaaaccgaagaaagtgttttctgctgcaccctggaggtttattaaagagcaaattctaacaaactattgagagtagaatcatgtgaaagaggacatgctctggcaataatcaaacattctgaagtgtgtcaaaagctttttaagccttctatcagaaaacagtcgtcagacgattgtcttaagattttcaacacatggagagcggtctgtcgaggcctcgcagtgtaaaacagacacagccttcaggtttcatcacttggaccaaaccaacgtgcctggtcagggggaaaggaggaggaggaggaggagggggagaggagggaggacttagggggagctgaggggtcgttgctgtatcatgtgttgacagctctttactctcacagacttacagcatggtgttgaacggctctgctaaccgctaactgtgctagctacttgtcactgaaccaaactgaagctgctattagaaaaaacacatttatttaatatgtcatcagaaatacatataggctttattatattaatattaagagaacaagaggatatggtatttgactgcacttaaaatgatgcatgtgtttattgctttggagcagagtttgtgcttgattattttgcctctagataaagcattttaattctaagaaatccgataaccccccccgtgtgtttgatgtcagtttgaagttgtttctaattgtcagacattaccagcatttgattttacttgaaagagaaatgagtggagggcatgtttattgttggttctgcttgatttctgaaagtctatagaggtataattagagccttattaagagatccatttctgcgctcgtgatgccacgtacagtaaatccacctctggagcctgtacgcagcaggactctgtcttatcagatgcctttttccttcaaattaaaagaatttttaagtccggattgagatatatttatatgtaaagattaaagatattaatgtaatgcacacaccacttattttttctaacaaaatcctattagagacagaggcgtgctagctgtagtgaaccatggcgtttaataatcgtctgtgagatttcttttttttttcttccaaatttaataatgcaataggtttacttacttgtgtgtttgctggttgacccgctacaaagtggagactgtttttagtcatgtaagtgatcagatgaaccttcacccctcctctgcatagacctgtgaaatcctccctctcgttgtatcatctcaaaagctccctcgaagacgtttctcaacgagagctgcattaaagattgtcttttttttttttgttcattctttttgcattttcatgagcggaggagggatgaaagttcatcgtcggacatattggtccgttatcagactgtgcctttcatgatggtgctgaaaacgaaacgagttaatcaaagaaatcttaactttcagaaaggccgcagaggcccagagtctacattgataagtatatattgatacatgacgatactgtaaggtgtgattgtctgtgtgtgtgtgtgtgtgtgtgtattttgagtgtgtgtgtgtgtgaattcctctgacatatgccaagaacacataaatatgcagacctgatcagtgtggagctgaccggaccaaaaggcctgtggggatcagtttcagacgacgggcactctcagcacaacccaaaaagtagaacttataaaacgagggaaacgttctcgactctgtaggtaacgagtagatctgtgtagacctcatgtagcattatttattcaactcttgtttccataggggagatggcgcttcccatactgccggttaaacacgtttctcctccttttcagtgattcatcttctcttgggcggcaataatgaagattctcagtatgcgcgacgccatatctgacccatttacgactttatcttttaatgtgaattgtccgcgtttacatacctggggtaattcttcggttagtttgttccttcacgagtgcccgtccccaaggttaagggattccccacaataaataaatcttgaaacctctgtggtcggctgcatatcatatttaaaaacaagacaaatgatgtttgggtttcacagtttattaatgtgcttgtattatgttaaatggtgtcacttttagaagtcaaactgtacgtcaagaccttgtcttaacactcatctgatcctggtcctaagttgagcctttttatttggttgtcatatttaattttttggaataaatactcaatgtatgaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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