2024-03-29 18:52:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_019616538 6987 bp mRNA linear VRT 18-NOV-2019 DEFINITION PREDICTED: Meleagris gallopavo testis and ovary specific PAZ domain containing 1 (TOPAZ1), transcript variant X3, mRNA. ACCESSION XM_019616538 VERSION XM_019616538.2 DBLINK BioProject: PRJNA62397 KEYWORDS RefSeq. SOURCE Meleagris gallopavo (turkey) ORGANISM Meleagris gallopavo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_015016.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Nov 18, 2019 this sequence version replaced XM_019616538.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Meleagris gallopavo Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6987 /organism="Meleagris gallopavo" /mol_type="mRNA" /isolate="NT-WF06-2002-E0010" /db_xref="taxon:9103" /chromosome="6" /sex="female" /tissue_type="blood" /breed="Aviagen turkey brand Nicholas breeding stock" /note="donated by Nicholas Turkey Breeding Farms" gene 1..6987 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:104911539" CDS 147..2390 /gene="TOPAZ1" /codon_start=1 /product="protein TOPAZ1 isoform X3" /protein_id="XP_019472083.1" /db_xref="GeneID:104911539" /translation="
MLKASDIKTHNSSSGNSPMQSFTEDSFEDGQLTELDELLKSFELDEKFKFADRVAAVEPREKNEAEKSSDCKYRDLVSCELLSELPLHAPNANNCSESMVQKPWKNDDRFSGKKFSLPLQTYGDSETGKTDRSIKASHSVQQILEMINLPRRYCRFYFVTLRGCERSKCWFWHVPKPGHEKICMAILKTYISINESGLLKRAVQIFVRYYREVARGENFDFQVLNDLLICLLKKCLLQELFQMLNVTAQINTLPALEVLLRVFECVASLNIRDAVPTLISTFCKLVNAGMFLEYEHLNYIIKLLHQLQVPSQEIDIVLNIKSRFQEMHFKSNWLFDFNLVMAEIQHCKEKNDWAKLGALYVNARTACENSDDLQKLSLRITEILTKDSEKDRPGVPFCDFADAVIKNSQCNEADRIFIGRAGISVMNSYRRVLQWIKGRKVLDKLQELRIHFTVLKGITGAERLASRCQIVNNAAEIFLETESLDGATWVLRESEWITNAPLWPCTENDIMDRHNLLFSLMHKYIRQSFYRQAFEVLQNLPGFQIGCNTVDVSQYSHVFNKLLSACYESKNLGVSSSAVDFMLSKNVAVDFFLLRGLITGLGRSCLWSKARTYYKTALSLGCYPPLQGNLRHKILPIPFYVSEVEMLLAIELFLVSNASAIQSPGATTQSFQIILKRCEDQAVKNSSDYQAGRERLILAARISDPKLFIRHMTVNVNMEEVYSLELTSALKWLKENMKWAGKVWLFQ"
misc_feature 1176..1703 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
gctggaggagagcagcgcaagtgttgcatcgtagaacatcagctgagctcagaccttcagaaaggagcagatagcttgcaggaaagtgagacattaatatacaagaatctggaaagttgaatgatgctgaaaattcgtgggatttgatgctaaaagcttcagatattaaaacccacaattcctccagtggaaacagtcctatgcaaagttttactgaggactctttcgaagatggacagctaacagaactggatgaacttctaaagagttttgaactagatgaaaagttcaagtttgcagatagagtggctgctgtggaaccaagagaaaaaaacgaagctgaaaaaagcagtgactgtaaatacagagatcttgtgagctgtgaactgctctcagaattgccattgcatgccccaaatgcaaacaactgcagtgaaagtatggtgcagaaaccctggaagaatgatgatagattctcaggaaaaaaattttcactgcccctgcaaacttatggagattctgagacagggaagacagacagaagtataaaagcttcccattcagtccagcagatcctggagatgattaacctgccccgtagatactgcagattttatttcgtgactttgcgtggctgtgaaaggtcaaaatgttggttttggcatgttcctaaaccagggcatgaaaagatttgcatggcaatacttaagacatacattagtatcaatgaatcaggccttctgaagcgtgcagtgcagatatttgtcaggtattacagagaagttgcccgtggtgagaattttgattttcaagtgctgaatgatcttctcatttgtttgctcaagaaatgtttgttgcaagaattattccagatgttgaatgtaactgcacagattaatacactaccagctttagaagttcttctgagagtttttgaatgtgtggcttctttgaatataagagatgctgtgcctacactgatcagtaccttttgtaagctcgttaatgctggtatgtttcttgagtatgaacatttaaactacataattaaactccttcaccaattgcaagttccgagccaggaaatagatattgttttgaacataaaatccagatttcaggagatgcattttaaaagcaactggctttttgactttaatttggtaatggcagaaattcagcattgcaaggaaaagaatgattgggccaagttgggagctttgtacgttaatgcaagaactgcatgtgaaaattctgatgatcttcagaaattgtctttacgtattactgaaatactaacaaaagattctgagaaagacagaccaggagttcctttttgtgattttgctgatgcagtaataaaaaattcccagtgtaatgaagcagacagaattttcattggaagggctgggataagtgtaatgaattcttatcgcagagtactgcagtggataaagggaaggaaggttctggataaattgcaagaactacggatacattttacagttctgaaaggaattactggggcagagagattagcatcaagatgtcaaattgttaataatgctgcagaaatttttcttgaaacggaaagtttagatggagcaacgtgggtgttgagagagtcagagtggatcaccaatgcaccactgtggccctgcactgaaaatgacatcatggatcgacataacctgttattttcactaatgcacaaatacattaggcagagtttctacaggcaggcgtttgaagttctgcagaacttgccaggtttccaaattggttgcaatactgtagatgtttctcagtacagccacgtttttaacaagctgttaagtgcctgttatgagagtaagaaccttggggtctcatcttctgcagtagacttcatgctttcaaaaaatgttgccgttgattttttcttacttagaggattaatcacaggcttgggaagaagttgtttgtggagtaaagctcgaacctactacaaaactgctttatcattgggttgctacccaccactgcagggaaatttacgtcacaaaatattgcccattcctttttacgtgtctgaggttgagatgctgttggccattgaattattcctcgtttcaaatgccagtgctattcaaagtccaggagctactactcagagttttcaaataatactgaaaagatgtgaagaccaggcagttaagaacagcagtgactatcaagcaggaagggagagacttatcctggctgctcgtatatctgatccaaagcttttcattcgacatatgacagtgaacgttaatatggaagaagtgtacagtttggagctcacatctgctctaaaatggcttaaggagaatatgaagtgggcagggaaggtctggctgtttcagtagtcattaattactaaagtctattgagggttagtgcttaaagcaatcattgttaaaagtaataaaaaataccaaaggcagttaccactgtgttcagactgtgccttaccaacttagagcaaggcttcaaaactcagttgtatttttaaatacttgtgttgatgataatgcagatggtaggacagagagtaatttttttttttcctagctgtctggattgtggtaccagtttatatagatgtttttgatggcatcactagatgatgaaaaagctgtatctttagaacctacgctctccttttttatggagattcttagactttggttgaatgtttctacttctgttaagtaaagggtttcccacattgcttcatagtttgtagaaacaatatgttttattttattttatttatattatattgtgaggatgatgtcctatccgtgtgccccataaaccttcaatgccaaaaacccattaaaaagtagtgaaagtgaaataacttgaaaataatttaccacattagacatgcctgacttagaatacctttcttttgcagaatggtgagtctacatgagttgcttccagctgaaggtttagttgtgtcttgataatagcatctgtatagcttcccatttgtatagctgtgccctttcactgaaaaagaaaacttacctctcctttgatggtgctcttagaggcaagtgttttttttgcctttacctctgataactgattttaccattttttagtttctgcctatgaagggatggaggcttctagcaacctggttctggcattcctgttactccaggagctcactttttccacctgcaattcctgaatcatatctaggacgtgaattatttcagtcagacttcatttactaatgcaaccttagtaaaaggactaactggcaaattgatgggacttttgttaaaactgaagtttgtccaagctttccactttcgtagtgtccagcatcaactttcacaaacacgacagtacagtttttggtctccatccctgttggagatctttgtgctgagaatttctgctcgttttcatatggaaggttacaggtttttgaagcctgttctatcctaagtgacagtcagtatggtggcattaagcccacagtgctttagaagtcttcccccctttgaggcaaagtgagtctcttctcagttctagcagcattaatgcaaggtgtcctttgtctgaattgggaaagtcatcgtgatctttgtgcaggatggttgttgagggttttggagtggtgttgatgtatttttgtttggaggagagagattggcagtatattgttcttttgcagagatctcacttgccttccttcttaaaacaaaaagttagattcagtgctaacaatcagatgacgtttctttaaagcctcatacctcaaaacttctgttgaggaacagttgacacttaattcagattgtctttgaattctgccatttggtgatttcaacaaactaaactagcagtgtagtcaacagtgagaaacgaagtcatttctgctaattactgttttgtgaaatcctttgtagcttaatcttgcttggaattagacagaagctatctgaacctcagctaaatcccccatttctgtaagcagtgccagatgtggctaatactatgtttgagagatgcagaaggacaaaatactcttagtaatccttacagattcaaagcttgtgatgtttcagagacagcactatttttccattataagtaaccctgaatttttgcttacatcatccccaggaataaagaaaaattcctctatattttggaggttagtcattgacattgcagcatagcttggaactgtggaaagtttatgcagtgttttctttccatcttctgagtctcatcttcagctgatgtgatgcaatctcagtcatgtcttatattaacaggcaaggcaagctcccctcatcattgctcagaagttaagaagatgtaactgatgcatcagaatccagctttctgtcagtacagtttttttctctatcaccaagataaacaagtaggcaatttaaagaggtttactgtaagtcttatacttcacacgtattgcgtccacttggaataccggacatatctggtctttttgatgtgtatcagaacttcagaaaggtttattgatcaacattctcagtagcgttttggcagcagaaactccattgctaaataagttgtaatgggtgagcaaaactccagtgctgaatggaaacgggcgcgaaaggatgaggaaatgttccaaaggatgaagttaattacaacaaaaacgataccgttttgccaagtcagctaccatagacagtacccatctcttttccccaggtataagttactgtttcttagtagatgaaagaacctctgtgttagaaataaagcaactcctttattagatttttttccccacgtaggagacaaaatgtacacttgtttgcagatggagagaggaaaatgtgggggaaaaatcctatgctgcacttagtagtcacatctagaaaagctgtgcttctgcactacttttttagtgaaaacatatgagaaatgtctttctttctctgcggaaatctttcttcagttttcactgattacagcgtatgcttttggaactattacttttgcaggtatggacagtttcttacgactaaaacagaataatgtcgtttggaagacttggaataattttgtttcaaagcattgatagttttgagggtatttcaaaacccacatctttaatggaagtgagaagttggaaatagaaacttattggtttatatgatgtttcatattgtagaagaagaggggagggagggtcattttggaggaattgttaagatgttaataaatgttttattctttgtgtgaaatatcccaaatgtctgtgaatcagtgttgtcattgagatattccattcatatccctataattaatattcataggtatgccagagaataagctaatggcaaagtagaagtgaagagtttaataactactacaaggatctggagtatgatacgctgtgtgaggggataaagaatgtgtgaaatcagtcagactatgcagttcttcgccattcaatagcacataatgtagcaaatactcatgaataaattgggttgaagctctcagctgtgagaatggccagcttccagttctaactgcagactggagcggaggatataaaggacagacctatgtgctgtgctcagctcactgaagaattctaatagtgtgttagtgagacttttacatgaggagaaacattaaattgaaatttctctgatatcgtgatcaatcttttagttaccaaaatattaatgcagtactcctcagcttaggaaaatgtctgtgtgtaggcagagctattgctaattcacatttttatcccttcacattctctggatgtattttgcatctttgtctgctttgttgcgcatctcaagtctacccgttgtgcgtaactcttctaaaatgacctgtatccaaacatgattgtggcactgttgaactcagagcttctgcaccattgggtgaaatgggactggaggagtcaataccactttctgtcttccagctgaagatcaggacggaaattagggggcaataattactgtctgtagctactttattgcattggttaaaagtttccttctggtaggagtagagagccagtcaaatacactttcccatgttaatgacatcttttgaaaaccatgctttctatgcagaaatgtatatatcacttgaaagaaatcatttgaatgtattgagtactcatttgcttttacggacccacagcctttctgatgacatgcatacacgcctggactccattcatgcagagatgtgtcatgaagaacaggcaagccaaacctacaaccagataaagccatagtgctagtcccactgaatcaggtggtagtgttcgtaataaatggtgagactttggggtaaaagtaggaattcattcctgtactcagaaagatgggagaaggttgttgtcctggacctgcacaatggagcaggtatctggcagcgtcacctgctgcttatctctcccaatttatattttcccttcctgagtttaaagaaatcccaggtgaaacaaacaaacgaagagcacgcttttctattgaatcaattaaatttattttcccatctgcataattatgcaaccaatttgcttatataaccaatggcttcaattgggaggcaaaaacatgctttacattatgaaaattatgcaaatcccccaagggttgtgagactgctaagttgatttaaagcttcactgagctacagattgttcccaagcctcatcagtcctctttttagccttttctgcttagaaatgcaatgggttgtatgcagatagctacactccccaacagttaatctctctatgttcttctactctgcagcaatagatgtttttcctcatctttccccaacagtaagatcctgttacagtgtgcaggtagagaatttggagggtcaaaagaagtttgtgtaactgtgtgctttttaaagcttactagtcttttaatttatgatccacat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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