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2024-04-29 07:51:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_016196190            5033 bp    mRNA    linear   MAM 11-APR-2016
DEFINITION  PREDICTED: Miniopterus natalensis testis and ovary specific PAZ
            domain containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_016196190
VERSION     XM_016196190.1
DBLINK      BioProject: PRJNA317472
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Miniopterus natalensis
  ORGANISM  Miniopterus natalensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera;
            Vespertilionidae; Miniopterinae; Miniopterus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_015504229.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Miniopterus natalensis Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5033
                     /organism="Miniopterus natalensis"
                     /mol_type="mRNA"
                     /isolate="MN2012-01"
                     /db_xref="taxon:291302"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="skeletal muscle"
                     /dev_stage="adult"
                     /country="South Africa"
                     /collection_date="Oct-2012"
     gene            1..5033
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 16%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:107524315"
     CDS             1..4959
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1"
                     /protein_id="XP_016051676.1"
                     /db_xref="GeneID:107524315"
                     /translation="
MRRPLPSGTTTSGGREGAARGLRKRGRRPGTSEVGVGGPEARGPEESRRKRRMVARAAEREEVESDKSAKEKRKVTEASSDDPQPGADLVRKESLTSSESFQTVECSEFQSTALLQSLGKEVLVDGIKRRIRIKTLESLESSPFKITENKATQNIKVEFQDELYKNTPKYSCNSLSPGVENNSVLKLHDCSCFPHSKDCNDENNLTCNSDGGCIHVSENSSEFKKGSLRSLSDKRDTSNIPQLSKTEENFMGVNKLLLEESDLYQRKNNGLLPCLQNEKNTYSVEESGAGRKPRKRVKVSETDEVVTGMNFSNAHNKSELLLQENKMGAEDKEAETSKVLRKVNHNTLSPVHHLSSLPETVGKKTSPEHHINTMFQKTLEPLLKEETKNASEPKEWKSTEPEEYFKSVKSLKVKSPSDCHAVEERSQGDLRNEAEEPKFSCRRAIPMMGKRTWPCYSCARVSAHCWKKASLPKSNYCLPGPGESFRQDDFLKHQTNQTDLTDSKLSLQSSTKERNSESSSKEKLDSNVNCLSSVSEIVSAVEPTLTVMKEPMIDDEKMTSKELSKSESEVVSNTTEETRLPNVTQNLIGSKKKDRGTLTKLNLTVASQHGQEPNNPTGKTIPRKACTAKPTLVVPDLVKILNTGRLTNFKIPLLKNKTEKRREINAKSSDREAYSPLELLDNISGAEIRQNRNKENVSTVISGPQSLNIQNVTTVQASSDSYCNKNFYSISSSFLKQGNNNKPSNYISEPGNIVSNKKAVPLTVENNTLFYDPGCTEKSPAFCSEQETFKQVSSEVSGRKTTKNFSDIKIIPDILKAYEDDVLLIDVIQDDPDLFGISTEGELSFTSEVPVISQEPNVAEEHQSADSKHMELPEKKPSDNLRELPVLDPGLMKSEICTSLPAANEIKYDFKDVNISLGEVNRTSQNEKLGDFIEHIKNSDLDEKCKFSDKVTVKEEKENMHEVCKSKDSKNAEITLGECQLATLGPKPLCLSLPPLNNPSAVQEDTLVKPWMNDTRFPGQHCVLKLQNPETSEIFKREKIVRVFQKSLGLMIPHRYCKFHFNTLRGCERSQCKFAHVPEQGDEKVCMDVFKKYISINELCLLQRAVNMFMEYYRKFPPGVHFDLQVLNDLLNSLLKHCLLKEVFQVLNLSIMVNTLPALKILLEIFEYVATMKLRSAVPALIDIFCKLVEAGMVLDPEHCNYIVKLLHQVQASKQEITAVLEMKSRLQMRQFKKNWTCDLDSALNEIENCKEKGDWTKLGNLYLKVKMDCEKFADFQRFCTCVAETLTKGYKEERPSVPFCEFAETVSKDPQNSEVDKTLLGRIGISAMYFYHKLLQWSKGRKVLDMLYELKIHFTSLKGLTGPEKLAPRCQIVNVAVEIFLKSGSLDGAMWVLRESEWIIDTPLWPCDRLDVLNRHNLLCTIAHEILAKSLYRQTFEVLQNLPGFQNSQETVEVSQYSLLFNKLLDACIESNSLGISSSVAEFMISKSIPIDFSSLRRLITSLGRSCLWLKARAHYKSALSLGCYPPLEGNLYRKLLRIPSYLSEIEMLLAIEIFLVSNASSIQSPGTPTQTLQIVLKRCEENKSRSKDDYQAAVERLMMAARLSDPKLFVKHMTVNVNKEQVYSLEHCSALKWLKENMKWAGKVWLFNNH"
     misc_feature    3739..4266
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:434113"
ORIGIN      
atgcggcggccactgccctcgggcaccacgacgtccggtgggcgtgaaggcgctgccagaggcctgaggaagcgaggccgtcggccggggaccagcgaggtgggagtcggcggccccgaagcccgggggcctgaggagagcaggcggaagaggagaatggtggcccgggcggctgagagagaagaggtggaaagtgacaagtcggccaaggaaaaaagaaaagttactgaagcctcgagtgatgatccacagccaggggctgacctggtaagaaaggaatcattaaccagttcggaatctttccaaacagtggagtgcagtgaatttcaaagtacagctctcttgcagtctttgggtaaggaagttttggtagacggtattaaaagaagaattcgaattaaaacacttgaaagcttagaaagttcacctttcaaaataactgaaaataaggctacacaaaatataaaggttgaattccaagatgaactgtacaagaatactccgaaatattcttgtaacagcttgtcacctggagtagaaaataattctgttttaaagttacatgattgcagttgtttcccccattccaaggattgtaatgatgaaaataaccttacatgtaattctgatggtggatgtattcatgtatcagaaaattcctcagagttcaagaaaggaagccttaggagcctttcagataaaagggacacaagtaatattcctcagctttcaaaaactgaagaaaacttcatgggagtaaataaattactgcttgaagaaagtgatttataccaaagaaaaaataatggcttgcttccctgccttcaaaatgagaaaaatacatactccgtagaggagagcggtgctgggagaaaacccaggaagagggtgaaggtgtctgaaacagatgaggtggttactgggatgaacttctctaatgcgcataacaagtctgagttgctgttacaagaaaacaaaatgggtgctgaagataaagaagcagaaacttcaaaagtcttgagaaaagtaaaccataatacactctctccagtgcatcacttatcaagtcttccagaaacagtaggaaaaaagacaagtcctgagcatcatataaatactatgtttcagaaaaccctagagccacttttgaaagaagaaaccaagaatgcttcagagcccaaagaatggaaaagcacagaaccagaagaatattttaagtcagtgaaaagcttgaaagtgaaatcgcctagtgactgccatgctgttgaagagagatctcagggagacctaagaaatgaagcggaagaacctaagttcagctgtcgccgagcaataccaatgatgggtaaaagaacttggccttgttattcatgtgctagagtatctgctcactgttggaaaaaggcttccttgccaaaatcaaattactgtcttcctgggcctggggaaagctttaggcaagatgactttcttaaacaccaaacaaatcaaactgacttaactgactccaaattatcattacaaagttccacaaaagaaagaaacagtgaatcttcaagtaaagaaaaattggactctaatgtaaattgtttatcttcagtctctgaaatagtctctgctgtagaacctactctaactgttatgaaggaacccatgatcgatgatgaaaagatgacgtccaaggaactgagcaaaagtgagtcagaggtagtttctaatacgactgaagaaactcggttacctaatgtgactcaaaacttaataggaagtaagaaaaaagatagaggaactctaacaaaacttaatttgaccgtggcttcccagcatggccaggaacctaataaccctacaggcaaaactattcctcgaaaagcatgtactgctaagccaacacttgtggttccagacttggttaaaatattgaacacgggacggctgactaactttaaaattcctttacttaagaataaaacagaaaaaagaagagaaataaatgccaagtcttcagacagagaagcatatagtcccctagagcttcttgacaatatatctggagcagagataagacagaataggaataaagaaaacgtctccacagtaatttcaggacctcaatctttaaacatacaaaatgtcactacagtgcaagctagttctgactcatactgcaataagaatttctatagtatctcttcaagttttttaaagcaaggtaataataacaagccatctaactacatctctgaaccaggcaatattgtttccaataagaaagctgttcctctcacagttgaaaataatacacttttttatgatcctggatgtacagagaaaagccctgccttctgctctgaacaagaaacattcaaacaagtttcctctgaagttagtggtaggaaaacgactaagaacttttcggacattaaaattattccagatattcttaaagcatatgaagatgatgtcctcttaattgatgtaattcaagatgacccagacctctttggaatctccaccgaaggggagctctcatttacttcagaggtccctgtgataagccaggaacccaatgttgctgaagagcaccaatcagcagattccaagcacatggaacttcccgaaaaaaaaccaagtgataacttgagagaacttcctgtattggatcctggattgatgaagtcagagatctgtacttccttgccagcagcaaatgagataaaatatgattttaaagatgtaaacatttccttaggagaagttaataggacctctcaaaatgaaaaactgggagacttcattgaacacataaaaaattcagacttggatgaaaagtgtaaattttcagacaaagtgactgttaaagaagaaaaggaaaatatgcatgaagtttgcaaaagcaaagattctaaaaatgcagagattacgcttggtgaatgtcaattagcaacactgggccccaaacctctgtgcttatcgctaccacctttgaataatccaagtgctgttcaagaagacacactagtaaagccatggatgaatgataccagatttccaggacagcattgtgtcctaaagttgcagaatcctgagacctctgaaatatttaagagggaaaagattgtaagggtgtttcagaagtccctagggttgatgataccccatagatactgcaaatttcattttaatacattacgtggctgtgagcgatcacagtgcaagtttgctcacgtgcctgagcaaggggatgaaaaggtttgcatggatgtgtttaagaaatatataagtatcaatgagctgtgtttgctacaacgtgcagtaaacatgtttatggagtactacagaaagtttcctcctggtgtacactttgatttacaagtgctaaatgaccttctgaattctttactcaaacattgcttattaaaagaagtatttcaggtattgaacctcagcataatggttaacacgctgcctgctctgaaaatactactagaaatatttgagtacgtggcaactatgaaattaaggagtgctgtacctgctttaattgatatcttttgcaagcttgttgaagctgggatggtgcttgacccagaacactgtaactatattgttaagctcttacaccaggtacaggcttccaaacaagaaataactgcagttctggaaatgaaatccaggttacaaatgaggcagtttaaaaagaactggacctgtgatttagattcagccttgaatgaaatagagaactgtaaagaaaaaggtgactggaccaaattgggaaatttataccttaaggtaaaaatggactgtgaaaaatttgcagatttccagagattctgtacttgtgttgctgaaacactaacaaaaggctataaagaggagagaccaagtgtcccattttgtgaatttgctgaaacagttagcaaagatccacaaaatagtgaagtagataaaactttgctgggaagaatcggaatcagtgctatgtacttctatcacaagctgttgcagtggtccaagggaaggaaggtcttagatatgctctatgaattaaaaatacattttacaagtttaaaaggacttacagggcctgagaagttagcaccaagatgtcaaattgtgaatgttgcagtagaaatttttctaaaaagtggaagcctagatggtgccatgtgggtattaagagagtcagagtggataatcgatacaccactatggccttgtgatagactggatgtactcaatcgacacaatctgctctgtacaattgcacatgaaatcttagcgaagagcctttacagacagacatttgaagttttgcaaaatctaccaggttttcaaaactctcaagaaactgtggaggtctcacagtacagccttctttttaataaacttctagatgcctgtatagaaagcaacagtcttggtatttcatcctctgtagcagaattcatgatttcaaagagcatccctattgatttttcctctcttagaagattaattacttctttaggaaggagttgtttatggctcaaagcgagagctcactacaaaagtgctctttcattgggttgctatccaccattagagggaaatttatatcgaaaactcctacggattccgtcttatttatctgagattgaaatgcttttagctatcgaaatcttcctggtatctaatgctagtagtattcagagtcctggtactcctacacagacacttcagatagttttgaaaagatgtgaagaaaacaaatcccggagcaaggatgattaccaagctgcagtggaaagattaatgatggctgctcgtttatcggatcccaagctttttgttaagcacatgaccgtcaatgttaataaggaacaggtctatagtttggaacattgttctgccctgaaatggttgaaagagaacatgaagtgggctggaaaggtttggcttttcaataaccattagttaatacttttttttaagttcaagtaatcactgttgaaaataagataataaaaataaagacggttttcactata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]