2024-04-20 18:41:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015883234 10133 bp mRNA linear VRT 18-FEB-2020 DEFINITION PREDICTED: Coturnix japonica argonaute RISC catalytic component 3 (AGO3), transcript variant X3, mRNA. ACCESSION XM_015883234 VERSION XM_015883234.2 DBLINK BioProject: PRJNA314147 KEYWORDS RefSeq. SOURCE Coturnix japonica (Japanese quail) ORGANISM Coturnix japonica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029538.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 18, 2020 this sequence version replaced XM_015883234.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Coturnix japonica Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10133 /organism="Coturnix japonica" /mol_type="mRNA" /isolate="7356" /db_xref="taxon:93934" /chromosome="23" /sex="male" /tissue_type="blood" /country="France: Tours, INRA PEAT" gene 1..10133 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 38 ESTs, 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 92 samples with support for all annotated introns" /db_xref="GeneID:107323820" CDS 239..2821 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X2" /protein_id="XP_015738720.1" /db_xref="GeneID:107323820" /translation="
MEISSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYDADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 248..2815 /gene="AGO3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1415..2692 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1826..1828,1838..1840,1874..1885,1892..1894, 1916..1918,1925..1927,1937..1939,1949..1951) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2030..2032,2036..2038,2246..2248,2660..2662) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
gtgcggtgcgggggcggaacttccggctgccgtaggttcggcgggcggcagcgtgagtcggggctgcggggcggccacgcaacttccgccgcctcctcaggagacgggagcggcccagaggagctgcggcctaacgggaccgggagccgctctgctccctcacagctcagccccaccgggcccagctcagcccagcggaggagcccgcagccccgagtggctgcacccagctccatgaatggaaatcagcagcgcaggacccgtcggggcacagcccctgctcatggtgcccagacggcctggctatggcaccatgggcaaacccattaaactgctggccaactgcttccaagttgaaatcccaaagattgatgtctacctctatgaggtggatatcaaaccagataagtgtcctcggagggtgaacagggaggtggtggactcaatggtgcagcattttaaagtgacaatatttggggaccgtcgaccagtttatgatgggaaaagaagcctttatacagccaacccacttcccgtggccactactggggtggatttggatgtgacattaccaggagaaggtggaaaagatcgtcccttcaaagtgtcaataaagtttgtttctcgggtgagctggcacttgctgcatgaagttttgacaggaagaaccttgcctgagcctctggaactagacaaacctatcagcactaaccctgttcatgctgtcgatgtggtgctacgacacctgccctccatgaagtacacccctgtgggccgctccttcttctcagctccagaaggctacgatcaccccctgggggggggcagggaggtctggtttgggttccatcagtctgtccggcctgccatgtggaagatgatgctcaacatcgatgtttctgccactgccttctacaaagcacaacctgtgattcagtttatgtgtgaagttcttgacattcataatattgatgaacaaccgagacctctgactgattctcatcgggtaaaattcaccaaagagataaagggtctgaaggtagaagtgactcattgtggaacgatgagacggaaataccgtgtttgtaatgtaaccaggaggcctgcaagtcatcaaacctttcctttacagttagaaaatggccagactgtggagagaacagtagcacagtacttcagagagaaatacaacctccagctgaagtatcctcatctgccttgcctgcaagtggggcaggaacagaaacacacctacctgcctttagaagtatgtaacattgtggctggccaacggtgtatcaagaagctaacagacaatcagacatcaactatgataaaggccacagcgaggtctgctccagataggcaagaggaaataagcagattggtgagaagtgcaaattatgatgcggatccatttgttcaagagttccaattcaaagtccgggatgagatggcccatgtaacagggcgtgtgctgcccgcaccgatgctgcagtatggaggacggaacagaacagtggcaaccccaagccacggagtttgggacatgagagggaagcaattccacactggtgttgagatcaaaatgtgggctatagcttgttttgcaacgcagagacaatgcagagaagaaatactgaagggttttacagaccagctgcgtaagatctccaaggacgcagggatgccgatccaaggccagccctgcttctgtaaatacgcccagggtgcagacagtgtggagcccatgtttcggcacctcaagaacacctattcagggcttcagctcatcattgtcatcctgccaggaaaaacaccagtgtacgcggaggtgaagcgtgtgggagacacgctgttgggaatggccacgcagtgtgtgcaagtcaaaaacgtcattaaaacatctccacagaccctttcaaacctgtgcctgaagatcaacgttaaattaggaggaatcaataacatccttgtacctcatcaacgaccttctgtgttccagcagccagtgatctttctgggagctgatgtcactcaccctcctgctggagatggaaaaaaaccttccatagctgctgttgtaggtagtatggatgctcatcccagtcgatactgtgccaccgtgagagttcaacggccccgccaagagatcatccaagatttggctgccatggtgagggagcttctcatccagttctacaagtcaacacgcttcaagcccacgcgtatcatcttctatagggatggggtctctgaaggacagttccgacaggttttgtactatgaactgctagccattagagaagcctgcatcagtttggagaaggattaccagcctggaataacctatattgtggtgcagaaacgacatcatacacggttgttctgtgctgacagaacagaaagggttggacgaagtggcaatatcccagctggaacaactgtagatacagacattacacatccgtatgagtttgatttttacctctgcagtcacgctggaatacagggtaccagccggccctcacactatcatgttctgtgggatgataactgttttactgcagatgaacttcagctgctgacttaccagctctgccacacatacgtgcgctgcacacgatcagtttctatacctgcaccagcgtattatgctcacctggtagcattcagagcacgataccatcttgtggacaaagaacatgacagtgctgaaggaagccacgtttcaggacagagcaatggcagagatccgcaggccctggcgaaggctgtacagattcaccaagacaccttacgcacgatgtacttcgcttaagtcaataaaaggggagcgaactcgctgacaggaagaactgacaaattaagccacatacaatgtatgtttccagtggggttggtttatggggtgtgcctccgatcgtgcagggccgagaggctgacccttaaattgacacaaggaagattgtttacttcaccgaggaacacagcactattatgcaatatgaaaccagccaactgcttttgtggcgcggtctcctgtaggaagcaccgccatcattttccttttctttttcatttctcatagtttaaccctcttatgcctttacctcaagttgctcggcagcacaactctctttgcaaaaaaaacaaccaacaaaattaataatgatactctaaacaaagaaagggtggtgtgattgtagataagcaacctggatcagaacagtcacagtcattcttggggagagagaaaagtgtgcagaaacccttttgttttttcacccaattgaggaatctttctctcagtgttgccatcagcattcgaacatatccgagtacatctgaatgtacagcactaagtagaaagaaatagaggggagggaagatgttttgcacactaatccaatcatttgaacgtagtttagccaacctgctgcctttcttcacagctttggagtcctcagctccaacaattcccttttaagaagcaaacaaagctagtggtgttactgcaggcagtggtgatcccaactcgctccctggcgactttactaaagctgctgttttaacctagtccaaaagtttcaattcttttctatctggcaagtcaaacatcttgaagcttcatgtgaggttgagcgtcccgagcttgatgggatggctacagtaaacaccagaactgaaactttagagctaaggtcgtctttgacaaaagcaaaacgctcgtttacttgctgcctctcacaccttaatgtgatttcacatgtacgtgttttttgaagtttagcttcctttgtttcttttatatttattagagtaataataatgctttaatttaattattacagaacggatggtcaacaccgactttttattttttagaagcgtaaccgtgtttgtttttaaaaaagaactgacaacttgtttttgctatcttttagtgcaataagcgaaaagaaaaccgtgtccattgagctgtaaccagagcagtgtttgtaccactggctgtggggtgggtgggtgggaaatggacaccttcgattctcaaaggacgaagtaattaagccttaattttgaaaggaaagttttttagtcagaaggaatttcctgttttccttttttaaatcaaaattagcaaaaaaaaattaatagcttttggatctctgcaaagcttcacctgcggcgctttggtttaacaaaggaaccagccttattttgggctttgagacgtggaagagatttgaagtaaacacaaaaaaaaaaggattttttttattattaagatctgagtttttatgtgcttaatgaaacctatttgacacggagaaaacatctgggagttattacgagtttttaggctattttccctctttgataacgactttccttttaaaattaagttgttggtaagacttcatttcactttgcaaataaaaaagagggctgggataaagttctaccttttgaaatcactgaaatgtgaatcaaaccaacgggactcttttcattccactttaaaggtaaagcgatattaagatgtcagagatgagcatcgattccaagggggggctgggaagttttgcactttgtaaactcgtgaactgcatttttttgactgtttcttttgggtttttttggtcttttatttgcactggttcatagtatattatactgcagatcgtttctatgggcattgctgttatcccagcccttcttgaacccccacctgctctccacatgaaaaccagagggtcggtaaagcagctttctctcccggtgttctcacaggatgctctttgccaatatactgtgttttgagcctaaaatctgagcccgtttttgcttcagcaggcatgacttctcccccatcttttctgccagaagacaaagtactgtattttgtgcatctgtatattgtactgaaatgtatgtagtgctgttcgcaacgctgtctcagagagctctgctcagcggttggcgtgtaggcatgctttatctcccagtaataaggaaggtaatgtaaagactaaccttgcaccgttgaactggaaatagtcctgagggtgggcagctcgtgtggcttagagggaggggtattgggggagttgcgaggttagggttagccccaagcccccctttctccttgtaatgtgcagtggggttagggttagccctgagccccccaccctgttgggctgcagctgcaggatggcagttctgttaatagaaggttcaggttaggctttgtacagaaagctaatgtttaaagagaagccgaattattattattattactattttttttcttgaaagaaaaggattttaccaaaccttcttgtgggtttctggcgttaagatgaaaattccttttttaaaaggtcttttaatgctcctttcagagacgctgcgcccttctcatcctgcccacgctcagtgactatgacccgagaggcttttcgctttcaactctcaccaaaaaacaaaagaagcttcaatgggaaaaggtgatcttagatgctagattgcttggacaactggtttacctggttttcatgtgaagagtacgtggaggtttgaatctctctccttggttttgcaaatatctacgtaaagtgccgatacttctttgtattacaatatcaacttactggcgttgtgagggccacacatttatgatgctgtagctgctatatttattgaaatggagatggacaattactgcactaaggaatgaggagataagcaaggaatcaaggttagttagagatcttgtttttttgttcttcgttttgttttcaaaagagaattaatggtgtgaaatatcaagtgtaacaaagggtgctgtcattttaactgagattaaatagccagatattcttcctttgtttaaaaacatatatattttgatgtttgcagtttgggggtggggggggaggggtcgggatataaatggtacctcatctgtggtggcagtttccggtatattttcagagtataatggatttcttttatttttgtacctgctctccttttaaaaaagacaaaaaaaaaaaagacaaaaaaaaaaaacaaaaccaaacaagctcaaatgttatgtgctgtgtggggaaatctcgagtggctcaccaggtccccccccccttcttctttcttgcatgggagctgcctgtggccgagggctgtgcttcaccctttgcagacatgcagctctcgtgctgcccatctgggtgcgtggctcccaccctgcagacgctgtatcagttcaccaagacctcgtttgtacttaagtgccacgtcctggtgggagctgcagtgctggtactgtgccaaagctgggttggtgctgagccctgcattgagctgagagggagcggagcattgcacagggcattgcacagggcattgctaggaggtgtgtgaacactgctggcaaagcaactgaccccatgcagggggcttcccctggtgggtataggggggtacacttcagctgtggccgtattactcaggattgttgtgttactgttaagtgtgtgatttggttacggtgtccaaaagttgttttctgtaggggttggttctggcatcgttctggaagcttggctgtagaaatggtttttctggagtaagaagagtttctgaaagctgtcaggcaaatgatttctagatgccattggtcctaaaccagtttcactttgtatacaggtttttgtcctttaaaatgctcagtgtgagacacaagatactcatcttctgtacaaattccagctacaaatactggctttctcctactctggaagtttgctctggtgaaactccgagctcagcctgcccttcaaacagcttgaggccttgttctttctcaatattccctttgtatcttgtcctcttctaatatcctcccagttttgtgagttgagggtttaggaccttcctcagagcacttttataacccaggaacccaacgctctgctgccataccttgcagttatccattccattgtcagagctgctgtccaaatggccacctctgtcccttcagtgctgtggagttttgcagctgctgcttatgggttgattggatctggtggaaataacccatagggggatgtgaaagggaaggatcccagtctccccttttcctacccgaagatggtacttcatattgatattgttaggacacccattttgctttggcacttgtttaagcaaggcatcaccgaggtaactggctcattgttgtgaccctggagctgtagtggtttagagcttgagctcgttgctgctttctgctagcaaaaggttctgtgtttttcaatagctgagttgcaaacatggggcagagcctcaggaagcctcatttaacactaaaacaaaggtgttggtccctcagcaggcagaggtgtgtgcagagggattgggctgcagggagagcattgaagcatcagcactgcagtaatgtgtcctgcctgccctggccttgcccatctgtgtccgaggtcccccctcacctaacacgggtagttcccatagggtccttcaacaacaaagtggttctgtttaaaattcgaagggaatatttcttattaagcaagacagtcctcagaaagtgcctttttttagaagacggtgctgtgtagattctattttccagttgtacgtggctgaacatttaggataaataactgaaaatgccaagtggttggtggtacctttaggtgctttcaggcatcagttctctgggtcaggaccaagcagaaccaggatggtggtttcctttggagggaaaagcattgggaagcgattgccaagagaagaggttaaacagaacagctcagcagacaggctgatgttaacgggtactgtggtttttaagtcattcaaccccatcatctgtgttctctgaatcccaaagcagcctttcctggttcaagacagacaggttcagtaggtcagacaacagagctgtggggttctgtgacccctttactaaacacagatgctccagtggatttctggctgcagtcattgggtggttggtacagaagatactgatagagctcccatgttaccttcagcgtcctgggctgcttgggtcagacttgaactcattgagagcaagcatgtgcctttttctgatccgagacagaagcttttagtgctggcagtttgcactggtcgatagtggggtcagagtgttgcttgaactgcttttaaggcttgaagcccttgatcagagtggagctggttttgtgttgagttacttaaaaggagccctgaattatttgtgaatgtcactaccccgagatgagaagcttttaaagcaaatggttactggagagtaatgtcagacaaacgtactgcctggtagacctgtggctttatgaaataaaacttaactctgatatgtttctccatagagagccattaattctgccttcatttgaatgttgcctgtcccggctgctgactgtaaggacacgaggaatgttgttggcagaggttgggaagtgggaatgtggtgctgaggactgaacatcactgatgatcactctctaaagagcagcttgcctgcagctgaggtggtgatatatgcacagtgctgtggtgtctgggataggagggatcagcaaagcagtaatggggagaaatgagcctctcctttcacacccaggtatgagcagtgaaggctgccgggtgccttaggtgctggttcaggctccaggctgcgtggggtggttatagagaataacagaagagcttttcaggttgttctctgcagtgttggggtaccatagggtcatccagccagcagctctggcatcggtgctggctctcagatgggttccctccctgaattgcttttgcttcagctttcagccctatctagtacacaggacgacgtgcgttgccttacgagagccagctgctgtgtgttctgaggatcagccgcgctctaagtgctgaattcctggtccaaaccttcttgccagttgctctttggagtctgtccatcccacacagcctgtgccctctgctttatctcagcacagccgtcccgaggagctccttgggctcagtccctgctgctttctgtggtctttcgttgcaaaatagaggatgagttgattcaaattaaaggttttctttacgtcgctgagaatctccgaggtctcccaaacccatttagcagttgagaaatgaaaacctaccgtaacaatctccaacagcaccaaaatgtgatcgtcgtgagattatcttacctgaatcgtgggtccacaaccaattctgatcccattgtgcgacaggcattaaaacaatttgctaatcacctttcatagtgctaacacttgcatatctcttcagtgcatccagaagggttatttgggcatctcacagtgctctgctctgttggccaagtgatacccagtggggcagtgctacagctgaggaacctttggtgtttggagccatttggagccattcctttggattttatatttgatttctgctcctctcagccatcaatctgtcgagtctcaccttgagaaaaccccacgttgtttccttgtagctaaacctgcttctatgcagttgcattttcttgttgtctgttccacagttgatcctgcacagcagcactgacaggatgggtgctcagtgatgtcccagctgtgctgccatgagcatcacggtgcagctctcctgtctgtgctgcttgtgagcactcaggcttccccaggtgcattaaatcgatggagaaatggcactgatgcttgttctgggtgaggattcatgtgttagagcgcatggaggcagctgatcatagataagagtgttgtcatgcaggggtatcacttaaagctttcactgtaattggtggcagttggtgatgagccactttgggcattgaaatgtctctttgggaggttggtggtggctgggttggctgtgtgtgccataagcattgctgtgttggtgcaggagcccgctgggagcagcgttgtgcaaataaaccctttttgcatattcaataccaccttgttcaaacgagaaacaaaactgttgtgctgtttgggattccttctctcagaataaagttctaataaaccaacccggtgcatcca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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