2024-04-25 07:33:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015865349 4462 bp mRNA linear VRT 18-FEB-2020 DEFINITION PREDICTED: Coturnix japonica NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X1, mRNA. ACCESSION XM_015865349 VERSION XM_015865349.2 DBLINK BioProject: PRJNA314147 KEYWORDS RefSeq. SOURCE Coturnix japonica (Japanese quail) ORGANISM Coturnix japonica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029520.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 18, 2020 this sequence version replaced XM_015865349.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Coturnix japonica Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4462 /organism="Coturnix japonica" /mol_type="mRNA" /isolate="7356" /db_xref="taxon:93934" /chromosome="5" /sex="male" /tissue_type="blood" /country="France: Tours, INRA PEAT" gene 1..4462 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns" /db_xref="GeneID:107315227" CDS 454..3933 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_015720835.1" /db_xref="GeneID:107315227" /translation="
MALFPAFAGAPEPGEAPAGSSEGSRRELDWLSNPSFSTEDALLLHQRTTEAANLAPEKSPLVRSTSRSGLSGESDTDESLKKSSKKRKKKKKKHHHYKTKKKAKGDSSSSESDLDTKHIKDKAAANLDDKTSNLTSNRFVWLDDVKAFTEETFRIDKKSDPSNWAYKSLYRGDIARYKRRGESCLGIDAKKQCIAWDNPTSEKKQLQKRPERYFSKSNVKTLNIDGIPVCNRSSPSDPAAFIPVFHAETSDPSDTTEVNPLGIYDPSTTEWLQGKGYKGEEHEPVNTQQAFQEPGINVNPILMAKVEEHNKKVRENPRDVQAWMNFVSFQDELMRGPSPYASTGEQEVRRKSLKLVLEKKLAILERAIESNPSNVELKLARLNVCTEFWESPAVIKEWQKLIFIHPNNPELWKKYLLFCQSQFSTFSVSKINSLYGKCLTTLAAVQDGSMVSHPPLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTKGQVEFFEPFWDSGKPRIGEKGARGWRAWMHQQEKGGWVAVDNPDDDDEEEIDEDEEIKDKTRPKWHIWMDIEYSRESRHWLPWRPDKTKNQAEEDCEDPERQVLFDDLGPSLIQLSNPDIQRQLLYSFLQFLGVPCINKLFPPSLYIAMDENNIFDNVLSDEKPLTCIDTPLSGFSSIGHMDTMQRRRHHIGHRKDGEEFIQNVFHALSPLFSGKEKSNLSVCWLQYEISKVVQCIQTKKKKKLKAQGRKSKKLAKNLLKAPDNRNNLALWKLYAYLEWLLGNTDDARKVFDTALCTAGTGGLKSPQLCSLSLLYAQLEVELLQSLEGAVTSRAVHILTKLAESRPYAPYSGQVLSVSVLKARKTYEHALQDCLNKAPVSDQDRTSHSNQLVNLVGCYTVFQYLTVGIDAAELVCAQALEKLEAPHPQKRENAAETPSIQHSPTALEAVTLLRANLLRFHMKISVYPLNPLREALTEALKWFPSNQALWRAYIQSQRKSHSASKARRFFDGVTRSTNSLEPWLFAIQAEQMRKKLIENVQRADVGEVFSTIPETGLTNRIISLFEHATQSENGTHCPLLWRMYLNFLVSVGKIERSKGLFYKAIQNCPWAKVLYMDAVEYFPEQLQETLDLMTEKELRVRVPMEELDLLLEV"
misc_feature 907..1185 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(907..933,940..945,955..960,964..966,970..1014, 1021..1029,1033..1041,1063..1071,1081..1086,1090..1095, 1102..1122,1141..1152,1162..1185) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1375..2373 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
tttatcccgtctcctttatggagggcttgctcattgatgctatttaacatggtgagcatctcctccggttagaaaacatataaatgcagactacgggaatagttattttcccctaagcctctgctaccgccatttgggatggactctctggccagacagacctgcagccagtgtttgctcccagcgtgctgcatgagggaaaacggggcggtgtggagggacagactctgtctgtgtatgcctcaaaccctgttcttccttatggacagagttcggatagtgcaggacatccgcagcaccgagcctaccagccctctgtaagcaacagccgtgctccggccgccattttgggtgccgtgcaggcggactacagctcccagcacgctcggcgccgcagcgccatcttgctccgcggggcacttcgggccggtagcaccgcggacgcgctgggacatggccttgttcccggctttcgccggcgccccagagcccggggaggccccggccggcagcagcgagggctccaggagagaattggactggcttagtaatccaagtttctctacggaagatgccctgttactgcatcagcgcactacagaagctgcaaatcttgcccctgaaaaatcaccactagtcaggagtacttcaagatcaggtttatcaggggaaagtgatacagatgaaagcctgaaaaagtcaagtaagaagaggaaaaagaaaaagaaaaagcatcaccactataagacaaaaaagaaagccaagggggactccagtagcagtgaatcagacctggacacaaagcacattaaggacaaagctgcagcaaatctagatgataaaacatcaaatcttaccagcaaccgctttgtttggctggatgatgtcaaggctttcacagaagaaactttcagaatagacaaaaaatcagacccttcaaactgggcctacaaatccctgtatcgaggggacattgcaaggtacaaaaggagaggagagtcctgtcttggcatagatgcaaagaagcagtgtatagcttgggacaacccaacatcagaaaagaagcaattgcagaagcgacctgagcgctacttctcaaagagcaatgtgaagactctgaacatagatgggattcctgtttgcaatagaagttctccatctgacccagctgcatttataccagttttccatgcggaaaccagtgatccttctgacacaacagaggtaaatcctcttgggatttatgatccatcaactacagagtggctacaaggaaaagggtacaaaggtgaagaacatgagcctgtaaatacgcagcaggcgtttcaagagcctgggataaatgttaaccccattctaatggcaaaagtggaagaacataataagaaagtcagagaaaacccaagagatgttcaggcttggatgaattttgtttcatttcaggatgaattaatgagaggacctagcccttatgccagtacgggagagcaggaagtaagaagaaaatcactgaagttagtcttggagaagaaactagctattttagagagggcaattgaaagcaatccaagtaacgttgagctgaaactcgccaggctgaacgtttgcacggaattctgggaatcaccagctgtgatcaaagaatggcagaagctgatcttcatacatcccaataatccagagctgtggaagaaatatctcctgttctgccaaagtcaattcagtaccttttctgtctcaaaaatcaatagcctctatggaaaatgtttgactaccctggcagctgtacaggatggcagcatggtatcacatcctccactgcctggcacagaagaagctatgcttgctatatttattcagcagtgccactttctgagacaagctggccactccgagaaggcagtgtctttgtttcaggctctgattgacttcactttctttaaacctgacagcgtaaaggatctgccaacaaagggacaggtggaattctttgagcccttttgggatagtggaaaaccacgaattggagaaaaaggagcaagaggctggagagcatggatgcaccaacaagaaaagggtggctgggttgctgttgacaatcctgatgatgatgatgaagaagagatagatgaggatgaagaaataaaggataaaactcgccccaagtggcacatttggatggatattgaatattctcgtgaatcaagacattggttaccttggaggccagacaaaaccaaaaatcaagcagaagaagactgtgaagatccagaaagacaggtattatttgatgatcttgggccatctttaatccagctttctaatccagacattcagcgtcaattactgtattcatttttgcaattcctgggggttccatgtataaataaactctttcctcccagcctctatattgccatggatgaaaataatatctttgacaatgtgctttctgatgaaaagccactgacttgtattgatacgccactctctggattcagcagtattggtcacatggacacaatgcaaaggaggagacatcatataggccaccgtaaagatggagaggagttcatacagaatgtttttcatgctctatccccactgttttcaggaaaggaaaaatcaaacctgtccgtttgttggttacagtatgaaatatcgaaggtagttcagtgtatccaaacaaaaaagaagaagaagctgaaagctcaagggaggaaaagtaaaaaattggccaagaatctccttaaagcacctgacaacagaaataaccttgctctctggaaactctacgcctacctggaatggctgcttggtaacactgatgatgctaggaaggtgtttgacacagccctttgcacagcagggacaggaggactgaagagcccccagctgtgcagcctcagtctgctttatgctcagctggaagtggagctactgcaaagtctagaaggagctgttacctcacgtgctgtgcatatattgaccaaattggctgaaagcagaccatacgcaccctacagtggacaagtgttatctgtcagtgtcttgaaagctcgtaagacatacgagcatgcactgcaagattgtttaaataaagcaccggtttctgatcaggaccggacaagtcattctaatcaactggttaacttagttggctgttacacagtgttccagtatttgactgtcggaattgatgctgcagaattagtgtgtgcgcaggctttagaaaagcttgaagctcctcatccacagaaacgtgagaatgctgcagagactcccagcattcagcattctcccactgctctcgaggctgtcacactgctgcgtgccaatttactccgattccacatgaaaattagcgtttatcctttgaatcctttgcgagaagctctaacagaggccctcaaatggtttcctagcaaccaggctctatggagagcatacatccagagccagaggaagtctcacagtgctagcaaggcacgaaggttttttgatggtgtcacaaggtccactaactccttagagccgtggctgtttgccatccaagcagagcagatgagaaaaaaacttattgagaatgtccagagggcagatgttggggaagtattttctactattcctgaaactgggttaacaaataggattatctctctatttgaacacgcgactcagagtgaaaatggcacccactgcccattgctgtggagaatgtatctgaactttctggtttcagttggaaaaatagaaagaagtaaaggattgttttataaagccattcagaactgtccttgggcaaaggtactgtacatggacgcagtggagtactttcctgagcagctgcaggagacacttgatctcatgactgaaaaagaactaagagtgcgggtacctatggaagagctggatctactactggaggtttagaagaagataaggatgaagaaaatacaaagccagttctaaaactaacccctacaactcccttcaaacaagaacctgttgtgacttgagcactgacttcctcccctaagaacacatccgctcactgaagcagcgctggcttccacaggacaccctcttacaaacacagtcatgttgaacactgcccacatttcttattgtactgtttgaagataaattccctggagttcagcagagattccatacatgctgactgtagtttggtggctacacaggacataaacacctgctccacgatcactctgctctcctccaactggcagatctgagtaatttctttcagcttggtatgagtgtatataagtaccaagctgtagcacgttacatctgttcacaaacagctggtaaaagccaaatcttgtcttcaacagacacccattatggacttgtactgggatgttttgataaatgtctgctttaatatgaatatttaggaaataaataccttaagttttttataattcaaatggaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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