2024-05-06 10:27:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015801555 1744 bp mRNA linear INV 02-MAR-2016 DEFINITION Leptomonas pyrrhocoris RNA Interference Factor 4 mRNA. ACCESSION XM_015801555 VERSION XM_015801555.1 DBLINK BioProject: PRJNA313437 BioSample: SAMN03702862 KEYWORDS RefSeq. SOURCE Leptomonas pyrrhocoris ORGANISM Leptomonas pyrrhocoris Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Leishmaniinae; Leptomonas. REFERENCE 1 (bases 1 to 1744) AUTHORS Flegontov,P., Butenko,A., Firsov,S., Vlcek,C., Logacheva,M.D., Field,M., Filatov,D., Flegontova,O., Gerasimov,E., Jackson,A.P., Kelly,S., Opperdoes,F., O'Reilly,A., Votypka,J., Yurchenko,V. and Lukes,J. TITLE High-quality genome of monoxenous trypanosomatid Leptomonas pyrrhocoris JOURNAL Unpublished REFERENCE 2 (bases 1 to 1744) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (02-MAR-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1744) AUTHORS Flegontov,P., Butenko,A., Firsov,S., Vlcek,C., Logacheva,M.D., Field,M., Filatov,D., Flegontova,O., Gerasimov,E., Jackson,A.P., Kelly,S., Opperdoes,F., O'Reilly,A., Votypka,J., Yurchenko,V. and Lukes,J. TITLE Direct Submission JOURNAL Submitted (17-JUL-2015) Life Science Research Centre, Faculty of Science, University of Ostrava, Chittusiho 10, Ostrava 71000, Czech Republic COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_015438362). COMPLETENESS: incomplete on the 3' end. FEATURES Location/Qualifiers source 1..1744 /organism="Leptomonas pyrrhocoris" /mol_type="mRNA" /isolate="H10" /host="Pyrrhocoris apterus" /db_xref="taxon:157538" /chromosome="Unknown" /country="Czech Republic: Prague" /collection_date="19-May-2010" gene 1..>1744 /locus_tag="ABB37_04029" /db_xref="GeneID:26904320" CDS 44..1744 /locus_tag="ABB37_04029" /note="encoded by transcript variant A; alternatively spliced" /codon_start=1 /product="RNA Interference Factor 4" /protein_id="XP_015660175.1" /db_xref="GeneID:26904320" /translation="
MYSESDLENYDEYASLDSSDELNAAELAEKLIEERDLRLGVAFQTYAWLFEAEDGFFKTNFPHLLPSDTTGTDRWDTKSGPDCYRVVSALLNAAAGNDAVVSKTEGNQGTATVAATTPPVGDKEDTSSNASDAATCTKFGLQPSGVYILSPADGKPSPASRFLCNNFATCILIPVAKELNRAHLRTAHADLFRGMPSIGEEGLDVVPGYKHTEPSGWALPISTAPEVVAKLKELYPSWRSPTPADVPLFTRPESSGSRDGVQRAPAASPRKLWTRNAARLMRSKERLLACIEAAGGWSQVQFVAVDVEAFAVTANSVPLPAEYAFVPIRPPRRRRVRAVAASDAATVPANGEKTARSRPLSIVHFFCHPGRIPIEEEDTVLHTCIDTHLIPYRNATFLTHDYRTKARQVDAAFVRNPRVVLINKGDPDSPTLMDLQAIRWLYAAAIWQHHRYCDVSKLMEKMRADPQEWIPDAQDIRCFDVSVLEAVAAECFQAAAEPQQNGATTAQKEAQKSRRVKEPESCWYHEVVRKSEECVENSVHCAMLDAQVLAQRVQEGLKKWHPGYSA"
ORIGIN
gtagctagtaaaatcaatttctattatcgacacactcctcataatgtacagcgaaagtgatctcgagaactacgacgagtacgcctcgctcgacagcagcgatgaactgaacgctgctgagttggccgagaagctgatcgaggagcgtgacctgaggctgggcgttgcttttcaaacctacgcgtggctcttcgaggcggaggacggtttttttaaaacaaactttcctcacctgctgccgagtgacacgacgggcactgatcgatgggacaccaagtcgggtcctgactgctaccgcgttgtgtccgctttattgaacgcggctgcgggaaacgatgcggtggtctccaaaacggagggaaaccagggtacggctacggtggcagccacaacgccgcctgttggcgacaaggaagatacgtcatccaacgcaagcgatgccgccacatgtacgaaattcggccttcagccctctggcgtgtacatcctctcccccgctgatggcaaaccgtcgccggcgtcacgcttcctctgcaacaattttgccacgtgcattttgattccagtggccaaggagctcaaccgtgcgcacctccgcaccgcacacgccgacctctttcgtgggatgcccagcatcggcgaggagggactggatgtggtgccagggtacaagcataccgagccgtctggatgggcgctgcccatctccaccgctccagaggtggtggcgaagctgaaagaactgtacccgagctggcgctcacccacgccggccgacgtaccgctctttaccagaccggagagctccggctcgcgtgatggcgtgcagcgggcaccagcggcctcgccacgcaagttgtggactcgcaatgcagcaaggctgatgcgcagcaaagagcgtcttctcgcgtgcattgaagcggctggcgggtggtctcaggtgcagtttgtcgccgtggacgtggaggcgttcgcggtgacggcgaacagtgtgcccctgcctgcagagtacgcctttgtgccgattcgacctcctcgcaggcgccgtgtccgtgctgtcgcggcgtcggacgcggcgaccgtgcccgcaaacggtgagaagactgcgcggtcgaggcctctcagcattgtgcacttcttctgccacccgggtcgcattcccatagaggaagaagacaccgtgttgcacacctgcatcgacacgcacctcatcccgtatcgcaacgctacttttctgacccacgactatcgcaccaaggcgcggcaagtcgacgccgcgtttgtgcgcaacccgcgcgtggtgctcatcaacaaaggcgatccggacagcccgacgctgatggacctgcaggcgatccgctggctgtacgctgcggccatctggcagcatcaccgctactgtgacgtgtcgaagctgatggagaagatgcgggcagacccgcaggagtggatcccggacgcgcaggatattcggtgcttcgacgtgagcgtgttggaggccgtcgcggcggagtgcttccaggctgctgcggagcctcagcagaacggagcaaccacggcacagaaagaggcgcaaaagagtagacgtgtgaaggagccagagtcttgttggtatcacgaggtggtccggaagagcgaagagtgtgtcgaaaacagtgttcactgtgcgatgctggatgcgcaggtgcttgcgcagcgcgtgcaggagggacttaaaaagtggcatcctggttactctgcctga
//
by
@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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