2024-04-24 06:12:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015649157 6201 bp mRNA linear VRT 17-APR-2020 DEFINITION PREDICTED: Parus major argonaute RISC component 4 (AGO4), transcript variant X2, mRNA. ACCESSION XM_015649157 VERSION XM_015649157.2 DBLINK BioProject: PRJNA312399 KEYWORDS RefSeq. SOURCE Parus major (Great Tit) ORGANISM Parus major Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_031791.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 17, 2020 this sequence version replaced XM_015649157.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Parus major Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6201 /organism="Parus major" /mol_type="mRNA" /isolate="Abel" /db_xref="taxon:9157" /chromosome="23" /sex="male" /tissue_type="blood" /dev_stage="4 year old" gene 1..6201 /gene="AGO4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 18 ESTs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:107214128" CDS 83..2668 /gene="AGO4" /codon_start=1 /product="protein argonaute-4 isoform X2" /protein_id="XP_015504643.1" /db_xref="GeneID:107214128" /translation="
MEALGPGPPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQMLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNISEQSKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 158..547 /gene="AGO4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 578..730 /gene="AGO4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 731..1093 /gene="AGO4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(887..889,932..934,974..976,986..988,1040..1042, 1061..1063,1067..1069) /gene="AGO4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1232..2539 /gene="AGO4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1643..1645,1655..1657,1691..1702,1709..1711, 1733..1735,1742..1744,1754..1756,1766..1768) /gene="AGO4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1847..1849,1853..1855,2093..2095,2507..2509) /gene="AGO4" /note="active site" /db_xref="CDD:240015" ORIGIN
cgcggcggcggcggggccggcggcggggcccggggcgggcggcggggccggcggcgagagcagcgaggccgccactgccgccatggaggcgctgggacccgggcccccaacaagccttttccagccgccccgtcgcccaggcctgggcactgttgggaaacccatccggctcctggccaatcacttccaggttcagatccctaagattgatgtttatcactatgatgtagatatcaaaccagagaaacgcccccgaagagtcaacagggaggtggtggatacgatggtgaggcacttcaagatgcagatatttggggatcggcagcctgggtatgatgggaagcggaacatgtacactgcacaccccttacccattggcagggacagagtggatatggaggttacgcttccaggagaggggaaggaccagacatttaaggtttccattcagtgggtgtcagtcgtcagccttcagatgctgctcgaagctctggcagggcacttgaatgaagttcctgaagattctgtacaggcactggacgtaatcacacggcaccttccctccatgaggtacacccctgtgggtcgctcctttttctcccctcctgaaggttattatcaccccctgggagggggcagggaggtctggtttggcttccaccagtcggtccgtcctgccatgtggaacatgatgctcaacattgatgtgtcagcgactgctttctatcgtgcccagcctatcattgagttcatgtgtgaggtcttggacatccagaacatcagtgaacaaagcaaacctctgacagactcccagcgcgtcaagtttaccaaagaaatcagaggtctaaaagtagaggttacccactgtggccagatgaagagaaaataccgagtttgcaatgttacccggcgaccagccagtcaccagacgttccctctgcagctggagaacgggcaggccatggagtgcacagtagctcagtattttaagcagaagtacagtctacagctgaaataccctcatctgccctgtctgcaagtgggacaggagcagaaacacacgtacctgccactggaggtgtgtaacatcgtggcaggccagcggtgtatcaagaagctcacagacaatcagacctcaaccatgataaaagcaacagccaggtctgccccagacaggcaggaggagatcagcagactggtgaagagtaacagtatggttggtgggcctgatccatatctgaaggagtttggaattgttgtccataatgaaatgacagagctgacaggcagagttctgccagccccaatgctgcagtatggaggcaggaacaagactgtggccacaccaaaccaaggcgtgtgggacatgagagggaaacagttctatgctggcattgagattaaagtttgggctgttgcctgttttgctcctcagaaacaatgcagggaagacttgctgaagagtttcacagaccagctgcgcaagatctccaaggacgccgggatgccaatccagggccagccctgcttctgcaagtatgcccagggtgcagacagtgtggagcccatgttcaaacacttaaagctgacttatgttggcctgcagctgatcgtggtgattctgcccgggaagacgcctgtgtacgctgaagtcaagcgggttggagatactcttctaggcatggccacgcagtgtgttcaggtaaagaatgtggtcaaaacctcaccacaaacgctgtccaacctgtgtctgaagatcaatgctaagctcggaggaatcaacaatgtgctggtacctcatcaaaggccctcagtattccagcagccagtgatcttcttgggagcagatgtcactcaccctccagctggggatgggaagaagccatccatcgcagctgtggtgggcagcatggatgggcatcccagccgctactgcgccacagtgcgtgtgcagacctcgcgccaggagacctcccaggagctactctacagccaggaggtgatccaggacctgaccaacatggtgcgggagctgttgatccagttctacaaatccactcgtttcaagcccacgaggatcatttactacagagggggagtgtcggaaggacagatgaagcaggtagcttggccagagttgattgccatccggaaggcctgcattagtttggaagaagattatagacctggaataacctacattgttgtgcagaaaaggcatcacaccaggctgttctgtgctgacaaaactgaaagggtgggtaaaagtggcaacgtaccagcaggcactactgtggacagcaccatcacacatccctctgaatttgacttttacctctgtagccatgcaggaattcagggaaccagccggccctcccactaccaggtgttgtgggatgacaactgtttcacagcagatgagctgcagctgctgacgtaccagctgtgccacacatatgtgcgctgcacccgctctgtctccatccccgcgcctgcctactatgccaggctggtggcttttcgggccaggtaccatcttgtggataaggatcatgacagcgctgagggcagccacgtgtcggggcagagcaacggccgcgatccccaggcgctggccaaggctgtgcagatccaccatgacacccagcacaccatgtattttgcttgagagcacctgggaagatgaggcaaaaacaacaacccacgcagtcctgaagtgtttggaagcctcctgctctgtccagggccaggggatttcggactgcccactaccagcagctccggacagtcgcactgaatctgttcttcactgcaacgtctgatgcaccaacacaattgagccatttgtttcattgttttctgtactagaaatccatagacttgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaggctgatcatcctgaaatttttcaaggacttggcacgaaaagtttctatcaaatcttttgctagctgtggtttttcagttctcctcatcccatgagctgacggtgactgctgctctgtctccgtgccctgctttgtgagtatgatgtgatggcaaaatgttttatccagctcgctgtaatccttctgtcgtgtggggccatagattttttaatggagattttagacttcactactgtaaatgccttttaacaaacataactttcacggtattgcagttttttgtcagttttactaattatctttttaatctctgcagacttgggctgcaaagcaattgcactatactgcgagttaataggtggttcttgttctgtgaatgtgtaatataaccaatagtgatgcctgtcagtagattttgatgataatggttataaataatactgccatggtatcataacaagtactgaaccatcatttcccccttctaaaaatgataaaacaaaaaaaaaaaattagcttttaggtattttgcaaacttttacaaaagtgcccactttatgctgctgtgtggtttgataaatctaagtgattttaaaacttttttctcatagaaggtttaactttggcaataaatctttgttttttaagcccccccaaacagtgtaattttctagctgaggattgtgcatgactttaaccgacattctcatgtcattttctgaacacacaatttggcagtttctgaaacagattagaaaagacgcatttccatgctttttttaagaattatttttaactgttttgtattcactgttggtgtcctgtctacgacattttttataagcttggaaactgggcgttccatgtagaaaaggccaacgtgtgcagttgaaatgtattgtgtgacaggcaacctgaggacttgtaccagcatttttaactgtttttttttcctgggaatctgggttgcccacacaactgcatatacagcattgttgaacccgtgtgagtctcaaatgctgattctgtcccagcctagaaattagggtttttaatctgcttggcttttttcagctgcaacctgtaatccagaacagggacgtggtttccctcgtattcctgtaatccatgaacattgtaatttaagactagattccttactgtatacctgagttagtgcaaattaaagtttattcctaaactaaggaggagtttgagaagcccaaggattgcactgtggtctctgatacttgtgtggggtttgctgctaagttgtctgctgtcccaaagcttaggaaccagccccctccaaatttcagcaataggaaatgttgtttccttcagtctttaagcttgtaaataaatgaaagtttacatttctaaatgctgttgttttcagttgtaccagagtacactgaacatcttcaaacagttttataacctccttgccagtaggaagtctcataaattaagtttaacttcttttccatttctgttgaaaatgggactgaagtgaaccctgctcccggcatgtgccaggacaggtttagattgaaaaaacgaaaagattcttttaagttttttaacttttcttttaaagaatacctcacttgtgtaataaaatcaggacatgtgggtgggagactgaccgctgcttttctcagtactcgttcagggagaagatacaaaaaccctttttagagtgaactctgactgacccaacacacacggagaactttggcaccttgaaaagcacctgagcacctgttggaggtggtaggatccaagatccctaatttgagtttgtgcactaggaatggggctggtttaacaggggtgcataagaaatgaactttatcacaaattagttgtccagtgccaagcactcctggttgagactgagggaaggaagagactctccttggtttgcctgtgactggatatttgaccaggtggaccattggcccctggtgagccctgggccagcacccgagcagggctggtgtgagcccactccgggcacagggctggagttttggtgggaaagcactgaagttcaggatccaaattgcagcagtgctgccctaggcaggtctgagcccaagtctggaggacttgaggacctgggtgagccctgtgggcctgactgactcgttctgcatgtgtcaatcaatgggaagatgtgcattctgtagctgtagttttagggtgttttttgttttttgggttttttttaataaataaagcctgttggccactgtttagctctgtggtgtgaaagattttaaatgtagcaaagttcaaagagttggggaagggggtggttgatatatctaaaatatatatatatataaaaaaaaaggggggggggagggggcagaaatcctgttttccacccgattctgcttgctttgtccctgctgagttctgaacaagccctggcaatccctagttagcctgtatccaccagtctggctgttgttgtctgtcagttacccaggcttgtgcccggagctacatccaaagggtgcagaggtcagggcacgggatgtccggtgtccaccctcgctcagccctttggatggggaagggccctggttcagagctggtctgacagcaccgacccccaacccctttgtggatgtcctgtacgagttttctggctcaatagcgagggagtgactctgctttcattttcagaaggcagggccagagggcattgatccatccccatcctgatccactgcgaggctctttccctgtgcactggaggaaagatcttgcactaaatatcacttacagattttcttagaccttgctattggcattttcatatttctatgtctagaggctgcaacttcaatgtaaaatgtttgcatttgttcagtttgacttctgatgtaattttttggtttctatattgttagacttgtaatgtttcaaatggtattttattaactttggactggatgtatgtctctagcaatacgaggtactttctaaactgtcctggggctcacagccccatgtcgaggtaagatgctgatcgtgtacaattgcaatgtattttttttttagcctgcaggggtattttgtgttcatgtgtccaaaaataataataataaaaaattggcattcttgtgccaaatgttctgtttttccttattggtgtccaataaatgcaatgtacagaatgagcaaccaacactgttgcctgtaaacaaatgtcttaaactatttaacttttaattaaaacttgtacacaatctgtca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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