2024-04-26 07:23:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015246500 10536 bp mRNA linear MAM 22-NOV-2019 DEFINITION PREDICTED: Vicugna pacos argonaute RISC component 1 (AGO1), transcript variant X3, mRNA. ACCESSION XM_015246500 VERSION XM_015246500.2 DBLINK BioProject: PRJNA221631 KEYWORDS RefSeq. SOURCE Vicugna pacos (alpaca) ORGANISM Vicugna pacos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021964181.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Nov 22, 2019 this sequence version replaced XM_015246500.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Vicugna pacos Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10536 /organism="Vicugna pacos" /mol_type="mRNA" /isolate="Carlotta (AHFN-0088)" /db_xref="taxon:30538" /chromosome="13" /map="unlocalized" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..10536 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:102541909" CDS 2364..4622 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X3" /protein_id="XP_015101986.1" /db_xref="GeneID:102541909" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 2406..2630 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 2658..2810 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 2811..3173 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(2967..2969,3012..3014,3054..3056,3066..3068, 3120..3122,3141..3143,3147..3149) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 3306..4493 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(3726..3728,3738..3740,3774..3785,3792..3794, 3816..3818,3825..3827,3837..3839,3849..3851) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" ORIGIN
tgggagagaggttccctcttacttctgccttccctagtttgggggtgaaagggagggtgggggctctctcccctgttttcccaaagcctccttggagtggagggtgcctaaggctaagtctggtgtatagtcctattttgggggaagagaaggctttgaggctagagtgtctgtcccatcccccatcatttctactgagctctaggggatgtctttctcccaagactccaaacaattattctgcctgggaggctaaggagatgaatggaatgtaagaacttggggaggggaaggttgtctcttatcagctacatccttttagggtcatgtttgtcctgttcagggtttataattgttcctgctgtttttaggtgttcatgtgtttgtgtgttgtgtatgtatgtgtgttctttgtagtgtgtctatggatctatttgttcattcatttagtatctgtatagtgaacacctcctgtatgccaggcactggagattcagcactgaccaaggcagatacagtctgaatctttgaagaactcacagtctagggtggtaaggcgtgtgtgtataaagataaactgttaaggtctaagcgtgtgtttagatgtgtatagaatagagaaatgtgtccttctgtgtgtgtatatctgtctatggcttgtgtacaatttctgtccagctctttctggaataggtagccatgctagtggttaagctttcacttccccagatggctgcattctgaaggccttttccccccaggctgggcctccatttccctgtctgcagagtggggtaggcttgacaggtggttagaaggagacacagcagcttaactctgggaagcatgcccctcccttaaatggttctgacctcttcctgaccccccaactaaggatatgtcccatccccccagcttggcagacagtgaaagcagatctctggtgttaggaggttctgggctggtttatccctctctcttcccacctgggctggtcccctaccggcaagaacaatagtagatgtggagaaagaattctcttaggcagtttcccttttttctccctttcccctctagctagaaaataaaactaggggcagcaatcaggctggtggcaagagaggagaaagtagtgggagctggcgcttccctagtcctttcccaaaggcttcctctctcttaaatttgatcccttcttctgtctgggcactgtgtagaaggagctgtggactgtggagagaatcttgtgttctccttcccagagccagtcatctcttccttctccagccatcatgctaatggctgcccctccatcccaagtcctttcctgtagcttactcttgcctcagtctcctatatttagcctgtcttcattccctagctttttcttcttttgaactttttcctcattgtctccccacttgcaaccttgcttcttgcctggggccccagctctaacctgtcttgccccagcccctaacttcagcctttcttcttcccaattcaagtgtttttctgctgtgacctctagtttcagcttcttcaccagcttcccgcttcagcctctctccttcccttagtctccaaactctgtccttttagtcttttctccttttctttttctccaacatcagccattcagttgccttaatcctttctcaaacactgcccccatccttcttgccccccacccccattggccttctttggatcttcctcctacctgcggtgcagaggagcattaagatgatgctatttcatgttcagggtggtgatgagtgaagtgagcatcaggctgacagataatagggctttcttggtttgctagatagctgttggaggcagatgtcttaatctagtagaagaaagagtttttagttactggagccagatttagccccctacttaacatgtaataggaagttattatgtattcacttggtgaatttaagatagataacaggggtaattttcctactggaaagtttttaaaaaatgagcctagattgtctgagccagtagaagccctcagttggactgggtaggcaagaaagagacttcccctatagtctgctgctcctgttctaggaggccttgaccttctctgattagagtggtaagaatatacaagattctaccctcaccagcctctctgtcttatagctgcaggcgcctacctgccccctctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagctcctggccaattactttgaggtggacatccctaagattgacgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttacactgtcacagcattgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtttccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccttggtcagtggccaaatccctgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccaccgccttctacaaggcgcagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcctaagcctctcacggactctcagcgtgtgcgcttcaccaaggagatcaagggcctaaaggtggaagtgacccactgtggacagatgaagaggaaatatcgcgtgtgtaatgttactcgccgccctgccagccatcagacgtttcccttgcagctggagagtggacagactgtggaatgtacagtggcacagtatttcaagcagaaatacaaccttcagctcaagtatccccacctgccctgcctgcaggttggccaggaacaaaagcatacctacctgcctctagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagatcagccgtctgatgaagaatgctagctacaacctagatccctacatccaggaatttgggatcaaggtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcaccgaccagctgcggaagatttccaaggatgcaggaatgcctatccagggccaaccttgcttctgcaaatacgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactgttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcacctcagactctgtccaacctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcggatgttacacaccccccggcaggggatgggaaaaagccttcgatcacagcagtggtaggcagtatggatgcccatcccagccgttactgtgctactgtgcgagtgcagcgaccacggcaggagatcattgaagacttatcctacatgatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggttcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttacgtgcgatgcacacgctccgtctcaatcccagcacctgcctactatgctcgcttggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagaagggagccacatatcggggcagagcaatgggcgggatccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgctgcccaaatccagaggaagcagggaggagggaggtggggtaggaagaaatgcagaaggccttgtttccttctacagagtggatgaaagagtggggaacagggccagtaagccagaccaccagccagaaatctctgatattcacctcatgtcctccacccctcaccccatcttgtcacatctggccctgaccccactggaccaagacgggcagcatcggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccctgcggacaaaagctggtaggtttgggtttgatactttagatgggaaagtgaggggcttgagaaagtgggtgggaggagggaagaatattttaggagccttaatcagaaaaggtctagatttgtttaagaagaaaaacgaaaccagacccagatcaatattttaggatactagatgttttaattggttgataatccagtttgtaggaagatttttaatgctaatggttttggttgctcctcccccagctgtcactcccctttccctattcctctctttccaccttttctaccccgccttacacctcctccctgtcagacaaccagcccctagtaagacttaaggcactatggcacttagctccgaagtgacatgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtaccttttgggtgggggacggggaggggtgggagaggaggtaggtggggatgaaatacccctaacccaacaagcctccagccagagcgccagctattttgcatttgaaggaattgacttccatattcattgagctttttaaaagatcatgacctcaagatggttaaaatccattgacatttgcactttcagacctgacaagtctcagagctgctgagatgactggcccctggcctttccacttatgtctcctttcttcctgtctcccattcctgggtctggagttactttcatagcatttctcactcttggtttctttttttccctgatggtcaagtctctttacgtttcaatatttcttaactggggtgtcttataacaaacgatccttaggtctaaaataagaaaaaagcaaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggaaatccctcccatgcccaatgagtttacatcccagaaacattgagccatcagaaggaactatatacctgacttgttctttggcctggctagttagggggtggttatctccccagggtggggctcaggctccacccttcctctgtgcagataatatctttttcttgctacaggctccctcttctgcactgccctgcactctttcctgcaaatgcatcttcccttcctctggactgttttctgacactttggctcatcccagatttcagcgtgtcctgtggataggctggggattttgctgctccctattgcttctgtttacacaaatgaatttttcctggtttcccactagggcatgtgagtgggtagcatgggcttttttttttttttttttttttccatctccctgggtagagatggggtttggctgtcttgcagaactggaaaagtagggggttctagcttggtgcctgtgaccttgaagcaaggctccctctttccttgactgttcatttttttcctgtcccactgtttgggatgcggagttcagcttcagtgtggaaattcctctttttgaggaacctgggcttggatttgccctaatctggtgatgaagccatgacactttagacctagcttgtgctcagaggccagccagaggaaggtcggtctgaatacgggcctgtgcagttagagctaccatttcccctccccagcagcccttgtacagacccagatttgctatgcaaaacagtctatcccaggttcttttctggttggctacttcattcagcaacttcacaaaacgtagcacaaacattgattatggagaaggcatcaggactgttgagtaactcctcctttacttcttttgtactggtatgggatgccccatgggcacagcccagctgaagaacagaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatacactgtctacttcgtgttcagtcaccctttggggaggggagctctcttgggacagtgggctctgcatgttctcttcttgggtgtgttttggggctgggatcagggcagcattcctggaggatccagtcattcaccagcatttgcaaatatccattgggagctggtggtagccacctactctcagcaacgagtttgtgttctctcttttttctctctttgcctcactctctccagttgggttttgaactggggcttgaaatgtgtattttagccctttggcattgtatatgccatttaggaaataaaagcaagaaaaacagcttgggcaatggcaagaaaatgacttcttgctgtgattttctttcttttcttttcttcttttttttaatctttgaaacttgaaaaatgaccttgaggattattcttgtttgaaaggtggtgcatgcagattgagcagtggtgttggcagcaagctttggctttctgggatttggttaaagtggtgcttcttacttaagctttgaggaattgctggggggaccccagcctcatcctcttaaacaggtctcttctccctttctttcacttttttgccttccttttccccttctctcttcctctgatctcttttaattttttattttatttattttttgttgttgttcactcagcttgctggctggcctgtctgcctatgtgataatgaattctctgcatggctacaatgatcccaccgttagctggcaaggtcaggcttagctccttggctgtaggagaccaagaatctgtttcccaggcccagtgatgtccaccctgggctgtactgccctccaacttacatgagggcattagcagaaggcctgtccaactagcatgataccaggagggcttctggcaacttccacacttgtccactctttggagttggtttctctcattgctttttctagatctggtttcatttctctcttcttggggcctcccttttctgaggatgtcctagagttgagctacttggtcatccggagttggagggttaggagatggacataggggaagaagagagtgataggaagaaaatggagagagtgtggcttaaatgtgggaaaggagggcattgatcttattgatcacttttccagtctagcctgactcattgggggttgaggtgctactgctagccactggggataatcctggggctgttgttcctgcgaacttaggcttagaataatgctgaagaagaaggtacctaaaagtatgacacctcccttaaaagttccggttctttcctattcagtagatcctctctggcctcctctttggctaagcaatgatgttgttggatagttttctttttcttgtccagaattctgtaaatgaggctagcaagatggacagccacggagacactttgacttcttagctggcccaggggatatctgcaaggctgactggacaatgtttttagacttggcatcatgtgtaataaagaaggatgaaagttccttccccttcagggtagaaagtcatctcaaactaactaaaatgttgttttggaaactacattggggaagttatttttatttatatttactgggcctaggccaatccaggatggtagctgggatgccttccttcttaaagtctgatcatggcagggttttgcagggcactgtttcctctttggccttctaagcagactggggagaagggattctctggttttctctccctccctccccccaccatttattaggacttaccttctccctgggcagggagagaggctaggttggtgctctccccttactctactccttagaacctctagctgctgtttgggagcccaagaaaggggatggagggaatgagctcaaaagaaaagaaaagaaaacaaaacaaaaaacagaataatgtggggaaggcagatttccttctttaaaaaggaaaataggaaaccctccaaggattgtgcaagtaaagacaatgtgtcgaatgcactgagtcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtgcacacagtccagcctgattggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatctctctcaagtccagcatggatggggaaatgttccttgaaccccacagctgtgtacttgtttgcatttgtttccccttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtaaaattatcccagcagctgtaatgtacagttccttctgaagcaagcagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaagtgcggtctctctcctttttttcttagcaaagaaaattcttgggatgaattatatctctgataggttttagattagaataatagattgatataagagtagaaccatcacttactaaaaggaggacagtgggtaaatcaaattccagagtgttgaaactgcagatcatatgtaatcatatttcatagggcctccacttattcttcattcaacaaacatgcaaagcactgtatcccacagtattgtggggaagtaggcaggcacaattcaaaaatgaggaaaatagctccttaaggagcttaaaaagtttggtgggggatgtgagtggtcatatggttcccaggtaccatttagagagagcgattgagggactgaacaagctgtaagtcagtagcaatgaaatagcaaagggcagacttgatagatgctcaggagatagacttatttggactcagtgaatgatggaacgggaagagagaagtagaggctaatgctcactctgcttgagcaagtaagtgtattgggacagtcctctagccaagattaggggaaaggggaggcaatagaaggaaggtggtgaattttgcgaagaaatacaattaaccttgtatagactcaacttttaggttcccaaggggcaacaaggttaaggtttccagtaaacacaatgttttggtgctcagggaagactacaaaactgcagttatagacatgggattcacattcatataaatggtagttaaagccattggagtgaacaagttggcttagaaaaagagtagagcatgagaaacctagtgtgcaactctaggaaacacagtttaagggatgaggagaggaagcaaaatggaaaatgactgtcagattactggtaaataccttgtatatttttgcttgatttaatgaggtgggagattagtcaagagagtagaataggattcaagaaaaatgttattaacatcatgacaactgattttcaccatgaaaactgaaaagagggtatttttctacgtagtttaccatcctccaccccgtctttgggatcttataactattggtcattctccaatatttcttaaaaatgaacattggaaaaacctaacttaaataacgttaagactgggacttccaagttgttcaccaccacctccacctccagcttccttctatcctcaggagatacttgtaaaagaataaaataaacaaacctaattttgttcctaa
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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