2024-04-20 16:52:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015184411 6262 bp mRNA linear INV 14-APR-2020 DEFINITION PREDICTED: Drosophila pseudoobscura protein argonaute-2 (LOC4804375), transcript variant X6, mRNA. ACCESSION XM_015184411 VERSION XM_015184411.2 DBLINK BioProject: PRJNA622252 KEYWORDS RefSeq. SOURCE Drosophila pseudoobscura ORGANISM Drosophila pseudoobscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046680.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 14, 2020 this sequence version replaced XM_015184411.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila pseudoobscura Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6262 /organism="Drosophila pseudoobscura" /mol_type="mRNA" /strain="MV2-25" /db_xref="taxon:7237" /chromosome="3" /sex="female" /tissue_type="whole body" /dev_stage="adult" gene 1..6262 /gene="LOC4804375" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 78 samples with support for all annotated introns" /db_xref="GeneID:4804375" CDS 1044..3824 /gene="LOC4804375" /codon_start=1 /product="protein argonaute-2 isoform X4" /protein_id="XP_015039897.1" /db_xref="GeneID:4804375" /translation="
MYPVGQPPPAPGSSVNPTAVTSPSAQNVAAGGATVGATASSAASQVASTLGTTTGTVTAAIATATPTTNPDMPVFTCPRRPNLGREGRPIVLRANHFQVTMPRGYVHHYDINIQPDKCPRKVNREIIETMVQAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDIMEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFNNDSYVQEFGLAISNSMMEVRGRVLPPPKLQYGGRVSTGITGQQLFPPQNKVSLASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEPEYRPGITFIVVQKRHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKKVMYFA"
misc_feature 1305..1694 /gene="LOC4804375" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1722..1874 /gene="LOC4804375" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1875..2237 /gene="LOC4804375" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(2031..2033,2076..2078,2118..2120,2130..2132, 2184..2186,2205..2207,2211..2213) /gene="LOC4804375" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2373..3695 /gene="LOC4804375" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2826..2828,2838..2840,2874..2885,2892..2894, 2916..2918,2925..2927,2937..2939,2949..2951) /gene="LOC4804375" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(3030..3032,3036..3038,3249..3251,3663..3665) /gene="LOC4804375" /note="active site" /db_xref="CDD:240015" ORIGIN
cacccattctgtctagccggagtgctttgccctcatttaagtgtggttaagagtgtacagcatgcgtcacgctcacacgtcgcgagtacgatttttgtgtggacggtgtggtgcctgctgtgggaaaacctgaagaaaattgcattttttgcataatgcgcgacgtgaaaagctaacaaaagttgtggaaaatcaaaattcgatagtctggccacagtttgtgcataatttcgggcagcgcgaacgtgtttggtgcacaaaaaccacgtctcgaaaatatcagatcagaattatacgtgcacacatttttgctgccatattaaacgcatacaacagcgttttattgctgtatagagcagagccagagcggagcggagcaccagggcagagcatagcccagagcccagagcccacacactaacactcacgagcgagatatgcgagaataaagaagaatttttcttagttgtattacaaaagcattaggatacacatatgtatataagtgtatatatacatgcatatgtgtgtacataggagtgtacatataaactaaacgaaagctgtgcctacatttgtgttcttttccaatactaaacatacaaaacaaacaacaacaaccacaataataatataaataaactaatgttaatgcaagcaaagagccaacagatcttcaaaaccagtctgtgctcattccaaaacatatatacgtatatatataaataattatatatatatagatattatatataactacgcctacgccaaccccacgcgcaacaacaacaacaacatggagaatcaaccaaacgaataaaactttaaactaatttaaagtgtgataagcaaaaggctgaaatctaaaaacaaaacaaaaaaactatgaataattagtagaaaccaaaagcaacaagcaacatcaacaacaatcaattacatatacaccaaaacacaagacatccaaacacgagccaacaacaacctttttatacattaattaaactatttttcttaaataaaacttaacatagtgcaagaaaatgtatccagtcggtcaaccaccaccagcgccgggctcttcggtcaatcccaccgctgtaaccagcccaagtgcccagaatgtggcagctgggggtgccactgtgggtgcgacggcctcatcagcagcctcccaggtcgcgtccaccctgggaaccacaaccgggactgtgactgctgcgattgccaccgctactccgaccaccaatccggatatgcccgtcttcacatgtccgcgtcgccccaatctgggacgcgagggcaggccgatcgtacttcgagccaatcactttcaggtgacgatgcctcgcggctatgtacatcattacgatatcaacatacagccggacaagtgtccgcgcaaggtgaatcgcgagattatcgagaccatggtgcaggcctacagcaagatctttggcgttctgaaacctgtattcgacggacggaacaacctgtacacccgcgatcctctgccgattggcaatgagcgcctcgagctggaggtgacactgcccggcgagggcaaggaccgcatctttcgcgtgacgattaagtggcaggcccaggtctcgttattcaacctggaggaggctctggagggtcgcacgcgtcaaataccctacgacgccatccttgccctggacgtggtcatgcgtcatctgccgagcatgacctatacgccagttggacgcagcttcttcagctcgccggatggctactatcatcctctgggtggtggccgtgaggtctggttcggtttccatcaaagcgtgaggccctcgcaatggaaaatgatgctgaacattgatgtctcggccactgctttctacaaggctcaacccgtgattgactttatgtgcgaggtgctggatatacgcgacatcatggagcagcgcaagccgctcacagactcgcagcgggtcaagttcaccaaggagatcaagggactcaagattgagatcacgcactgcggccagatgcgacgcaagtatcgtgtctgcaatgtaacccgccgaccggctcaaatgcaatcattcccactgcagttggagaatggtcaaactgtggagtgcactgtggccaagtatttcctggacaagtatcgaatgaagttgcgctacccccatctgccgtgcctgcaggtgggacaggagcacaagcacacctatcttccgctcgaggtgtgcaacattgtggctggccagcgatgcatcaaaaagctcaccgatatgcagacctcgacgatgatcaaggccactgcacgctcggcaccggatcgcgagcgtgagatcaacaacctggtgaagcgtgcggactttaacaatgactcgtatgtccaggagttcggtctggccatctccaattcgatgatggaggtgaggggacgagtgctaccgccgcccaagcttcagtatgggggacgtgtgtccactggcatcaccgggcagcagttgtttccgccccagaataaggtgagccttgcctcgcccaaccaaggtgtctgggacatgcgcggcaagcagttcttcacgggcgtggagatcaggatctgggccattgcctgctttgccccgcagcgaacagtgcgcgaggatgccttgaggaacttcacccagcagctgcagaagatctcaaacgacgccggtatgccgataataggccagccctgcttctgcaaatatgctacggggccggatcaagtggagccgatgttccgatacctgaaaatcaccttcccggggctgcagctcgtagtggttgtgctgcccggcaagaccccggtctatgcggaggtcaagcgcgtgggcgacaccgtcttgggcatggccacccagtgtgtacaggcgaagaacgtgaacaagacatcgccccagacgctgtccaatctgtgtctgaagatcaacgtcaagctgggcggcatcaattcgattctggtgccctccatccggcccaaggtatttaacgagcccgttatcttcctgggagctgacgtcacacacccaccagccggcgataacaagaagccatcgattgctgctgttgttggttcaatggacgcccatccgtcgcgatatgcggccactgtgcgagtacagcaacaccgccaggagatcatccaggagctgagcagcatggtgcgcgagctactgattatgttctacaagtcgacgggtggctacaaaccccaccgaatcatcctgtaccgggacggcgtctccgagggacagttcccgcatgtgctgcagcacgagttgaccgccataagggaggcgtgcatcaagctagagcccgaatacaggccaggcatcacattcatcgtagtccagaagcgccatcacacgcgactcttctgcgccgagaagaaggagcagagcggcaagtctggcaatataccggcaggcaccaccgtcgacgtgggcatcacgcatccaaccgaatttgatttctatctgtgcagtcatcagggcattcaaggcaccagccggccctcgcactaccacgtgctctgggatgacaatcactttgactccgacgagcttcagtgcctcacgtatcagctgtgccacacctatgtgaggtgcacgcgctccgtcagtataccagctccagcctactatgcccacttggtggcttttcgtgcaaggtatcatctggtggagaaggagcacgactccggcgagggctcacaccagagcggatgctcagaggatcggacaccgggagccatggccagagccatcacggtccatgcggacacgaagaaggtcatgtactttgcctaaaaagtagccaaattaccaaaccacaaaccccaacaaaaaccacaacaaatccacaacaaaaatcaaaaattaaaaatcaacttcgaaattcaattcgaataagcaaagagagatggagagaaagagagtacctccccacctccccaataaccctcccaaatccctcctcaaatcagaaaagccaagcaaagagaaagtttaacgtttaagtttagaaagtgagagagagtttaaggagtatataaggaatatcttgcatgcattagttttagggccaaacgacacaacaaaaacccacagcaaacactcaaacacacacacacacacacacagagatcgactcaaggagggctacaaaaacgtgaaaatcgcgacacgacaacgtgaagaattgattatagacatagggaataggggatcgggaaggaaatcgaatgttaatgcacaacaaaatgttaaaattctcaacagaagcatagcaaacaaagcgaaaaggcgaaaggctaaaaaaaaaaaatggaaaaccattttaacaaaaactaaacttaaagggaacaaaactacgaacgcaacaccaaaagccaagcagcagcattaattatctatcatcaaacttactacaagaacaccacgagagagagacacaacttttgtaaatgtgggggggaaaccaattaaaaatacaataaattgtacaatatatttttacaaataacgaattgaagacaaaaggggggggatggaacggatggaatgaacatttgaataagaatgaatgaacgcatacgaccaaaggtttttagtatacaaaaacgaatgaaaaacaaagcacacaaaaaacaattgaatatgtttgctgatcgacgactcacacaacatacaacacacaaaaaccgcaataaaacaccacaccacaccacacaacaacaaattaaaactctgattctctgtactgtgaacgaagaccaccaccaaaatgaaaataaagataaagatgaacatttaagggaaaactaaacaccaataagtgggggcactcgactcgacaaaggcattaaagcgctgaaacacaacatagaaaatacgaaacgaaaatgaataaaatacttcaataactaaagtgcagattaaactgaaaacatttaatagtttgtaagatttggctctaccaaaaaa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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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