2024-04-26 09:03:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015174246 5740 bp mRNA linear INV 11-FEB-2020 DEFINITION PREDICTED: Drosophila virilis protein argonaute-2 (LOC6624789), transcript variant X3, mRNA. ACCESSION XM_015174246 VERSION XM_015174246.2 DBLINK BioProject: PRJNA501994 KEYWORDS RefSeq. SOURCE Drosophila virilis ORGANISM Drosophila virilis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022587570.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 11, 2020 this sequence version replaced XM_015174246.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila virilis Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5740 /organism="Drosophila virilis" /mol_type="mRNA" /strain="15010-1051.48,49,85" /db_xref="taxon:7244" /chromosome="Unknown" /tissue_type="whole body" /dev_stage="adult" gene 1..5740 /gene="LOC6624789" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 59 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns" /db_xref="GeneID:6624789" CDS 108..2969 /gene="LOC6624789" /codon_start=1 /product="protein argonaute-2 isoform X3" /protein_id="XP_015029732.1" /db_xref="GeneID:6624789" /translation="
MYPVGQQSQWTTPSPTRPQSPSQAQTSFDTLTSPPAPGSSVNPTAVTSPSAQNVAAGGATVGGAAAAAAAQVASALGSTASVSAAIAAAAASPTTQPDMPVFTCPRRPNLGREGRPIVLRANHFQVTMPRGFVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFNNDSYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVSSGITGQQLLPPQNKVSLASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTLQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEPEYRPGITFIVVQKRHHTRLFCAEKREQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA"
misc_feature 450..839 /gene="LOC6624789" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 867..1019 /gene="LOC6624789" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1020..1382 /gene="LOC6624789" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1176..1178,1221..1223,1263..1265,1275..1277, 1329..1331,1350..1352,1356..1358) /gene="LOC6624789" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1518..2840 /gene="LOC6624789" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1971..1973,1983..1985,2019..2030,2037..2039, 2061..2063,2070..2072,2082..2084,2094..2096) /gene="LOC6624789" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2175..2177,2181..2183,2394..2396,2808..2810) /gene="LOC6624789" /note="active site" /db_xref="CDD:240015" ORIGIN
atcaattacatttaaaacacatacacgaaaaagcaaaaaaaaaagaaaaaaaaaccagaaaacctttgtatacattcttacatttcttaaacaaatactagtgcaaaatgtatccagttggacaacagtcacagtggaccaccccctcgcccacgcggcctcagagcccctctcaggcgcagactagcttcgacacgctcacatcaccaccagcgcccggttcatcggtaaatcccaccgctgtgaccagtccgagtgctcagaatgttgctgccggcggtgccaccgttggtggtgcagctgctgcagccgctgctcaggttgcgtctgctcttggctccacggccagcgtatcggcagccattgccgctgcagcggcatcgcccactacgcagccggatatgccggtattcacgtgcccgcgacgaccgaatctgggccgggagggcagaccaattgtgctccgtgcgaatcactttcaggtgacaatgccgcgtggttttgtgcaccattacgacatcaatatacagccggacaagtgtccgcgcaaggtgaatcgcgagatcattgagaccatggtgcatgcgtatagcaagatctttggggtgctcaagcccgtgtttgatggacgcaataatttgtatactcgcgatccgctgcccattggcaatgagcgtctggagctggaggtgacgctgcccggcgagggcaaggatcgcatcttccgtgtgacgatcaaatggcaggcgcaggtgtccctttttaatctggaggaggcgctcgaggggcgtactcgccaaataccctacgatgccatattggcactcgatgtggtcatgcgtcacttgcccagcatgacgtacacgcccgtgggacgcagtttctttagctcacccgatggctattatcatcctctgggtggcggtcgtgaggtctggtttggtttccatcagagcgtacggccatcgcagtggaaaatgatgctcaacattgatgtttcggctaccgccttctacaaggcacaaccggtcattgattttatgtgcgaggtcctggacatacgcgacatcaatgagcagcgcaaaccgctcaccgattcgcagcgcgtcaagttcaccaaggagatcaagggactcaagattgagattacgcactgtggccaaatgcgtcgcaaatatcgcgtctgcaacgttacacggcgaccagctcaaatgcaatccttcccgctgcagctagaaaacgggcagactgtggagtgcaccgtggccaagtactttttggataagtatcgcatgaagctgcgctatccgcatttgccctgcctgcaggtgggtcaggagcacaagcacacctacctcccgctcgaggtgtgcaacatagtggccggccagcgttgcatcaagaagctcaccgatatgcagacatcaacaatgatcaaggccaccgcacgctcggcaccagatcgcgaacgcgagattaacaatctggtcaagcgtgctgacttcaacaatgactcgtatgtccaggagttcggtctgaccatctccaattctatgatggaagtgcgcggccgagtgttaccgccaccaaagctacaatatgggggacgtgtctcgtcgggcataaccggacagcagctgttgccgccacagaacaaggtcagcctggcgtcgcccaatcagggcgtttgggatatgcgtggcaagcagttcttcacgggcgtcgagatacgcatttgggcaattgcctgctttgcgccacagcgcacagtgcgcgaggatgcgttgcgtaactttacactgcaactgcaaaagatctccaatgatgctggaatgcccatcattgggcaaccttgcttctgcaagtatgctactggaccggatcaggtggagcccatgtttcgttatctgaagataaccttccccgggctgcagcttgtcgttgtcgtgctgccgggtaaaacgcccgtctatgcggaggtgaagcgtgtgggcgacacggtgctgggcatggccacgcagtgtgtgcaggccaagaatgtgaacaagacatcgccacagacgctctccaatctgtgcctcaagatcaatgttaagctgggtggcattaactccattttggtgccctcgatacgacccaaggtcttcaatgagcccgtcattttcctgggcgccgatgtcacccatccgccggctggtgacaacaagaagccatccatagccgctgttgttggctcgatggatgcgcatccgtcgcgttatgcggccacggtgcgcgttcagcagcatcgccaggagataatacaggagctaagcagcatggtgcgcgaactgcttatcatgttctacaaatccaccggtggctataagccgcatcgcatcatactctatcgcgacggcgtctccgagggtcaattcccccatgtgctgcagcacgagctgaccgccatacgcgaggcatgcatcaaattggagccagagtaccgaccgggcatcacatttattgtcgtacagaagcgtcatcatacgcgactcttctgcgccgagaagagggagcagagtggcaaatcgggcaacatacccgccggcaccaccgtcgacgttggcatcacacatcccacggagtttgatttctatttgtgcagccatcagggcattcagggcaccagtcgcccctcccactatcatgtactctgggatgataatcactttgattccgatgagctgcaatgcctcacctatcaactgtgccacacctatgtgcgctgcacgcgctctgtcagcatcccagcgccggcctactatgcgcatttggttgccttccgtgccagatatcatctggtcgaaaaggagcacgattccggcgagggatcgcatcagagcggctcctccgaggatcgcacgcccggagccatggcacgcgctataacggttcatgccgataccaaaaaggtcatgtactttgcctaaaaagtataaaaagcgacaccaaaatgaaaaacaaacaaattaacaaaaacacatccacacagcagcagcagcaacaacaacaacaaaaacacttaaatttcgaaaatgaattcgaataagcagccaactcagaaaaaaaagaagcaaagcgtttacaaaagccgagtcgaaatcattagagaataagtttaaaatgatgtttatatttaagttacaaagaaagccagaacagctcttatggagcacatttgcattagcttttaggcccaaaatacacacacacaccaatacccacacgccaaaaccgtagggattagagaaaaagggaatcgaatgtttaagcacaagcaggcgcaacaaatgtgaaagagaattctcaaaaaaaaaaaaaatttttaaaataaaaacaagcgtagcgaaacaaactaaagggaacaaaacgaaagtcaaataacaacaacaaaaacaacaacagctgaaaacaaacgcaaaaaaaaacaacaacacacatttacgatgaacttttgtaatagaataaattatatttttacacaatacaaaacaaaaacaaagtttaaaaaatgtgaagacaaaaaaaatgcagacaaccaaaggttttttagtatatcaaaacaagaaaaaagttgctgattaacacacacacacacacagacacagacaacaaaacacatacacaaaaacaacaacaagaacaacaactcggaattctctgtactgtgaacgaagaccaccaccaagcttaaagaattattaacaaaaacaaaaatgacaacaacaaacaacaacattacgacaagcattaaagagtgtaataattagccatatatatctatatatatatatatatgtatgtatgtataaaacaaaaagaataacttcaatactactacaactcaaatgtccagaattgtaaagaaaagcaaactttttagtagacttaagttgggaattaccaaaaaaaaaaaaaaaaaaaaaacaaaacaaaaacaaaaaagtaacaacattaacgataactccaatttcaacaagggacaaacttttggtcaaacaattgctagttatatttatatattataatataaatataaagatatacatatatgtgtatttaggcaacaagtatattgtatctgtataaacgtggctagccgtgactttaacacaaatggcataaaacaaaaacaatacttaaaagtttgcgctaaacttatgttaaagtcaacagttgctgtttaactaaacagcgaatttaagttataaataaatagtttatgttttctataaacacactatgcacacacacacacactcacacacacacaacacaacatacacggcatatcaaacccaatgtccaattaatttatgtacctctatttagctcaacttaggtttcataattttaataacaaacacaaaacgctgttaattgtattaatgaagtcttaacaaataacgtggtgtacgggtaaacaaataatatgataattaagcgcaattcttaattcaaattatattttcgcagctgctccccttaactcatagggcatatttagtttaagttttagttttttttgttttttaaataattgccaattttacaaaccttacaaatattaatatgtatacataaatttatatacatatatgtacttttatggaggacacagttcaagttaacattatgctgatttgttcttattatagaaccgaaaacgagcaacccatttatttataacaattgctgtcttcagacacttcaagcgccgccctctcatgcaaatatgttgaagtttaattaacaattgttttaaaaaatatatttcgatgcctttcaaaacatgtcgtctacacacacgcacacacacagtcacacacaaatgcctacaccctcacacacacacacatacataaaatacatatatgtgagcattataaaatacataaattataaacgtgttaagctaatattttctattacaaattagttcttaaaacgaaaacaacaaa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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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