2024-04-29 06:41:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014937675 2446 bp mRNA linear VRT 09-DEC-2015 DEFINITION PREDICTED: Calidris pugnax testis and ovary specific PAZ domain containing 1 (TOPAZ1), mRNA. ACCESSION XM_014937675 VERSION XM_014937675.1 DBLINK BioProject: PRJNA305421 KEYWORDS RefSeq. SOURCE Calidris pugnax (ruff) ORGANISM Calidris pugnax Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015090803.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Calidris pugnax Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2446 /organism="Calidris pugnax" /mol_type="mRNA" /isolate="Ruff" /db_xref="taxon:198806" /chromosome="Unknown" gene 1..2446 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:106885461" CDS 546..2315 /gene="TOPAZ1" /codon_start=1 /product="testis- and ovary-specific PAZ domain-containing protein 1" /protein_id="XP_014793161.1" /db_xref="GeneID:106885461" /translation="
MTLRGCERAKCWFWHVPEQGDEKICMAILRTYISIKESGLLKRAAQIFVKYYREVTPGVDFASQVLNDLLISLLENSLLQEVFHLLNVTVQINTLPAVGVLLKVFEHVASLNITDAVPPLISTFRKLIDAGMFLEFEHFDRIIKVLHQLQVSSQEINIVLNIKSRFQERHFEKNWLFDFNLAVAEIQHCKEKSDWMKLGALYVNARTGCEHYNDLQKLSLCIAEILTKDSETHRPEVPFCDFADAVIKNPQHNEEDRIFIGRIGISVMYSYHKVLQWIKGRKVLDKLCEMQIHFTVLKGLLGAERLASRCQIVNKAAEIFLKTGHLDGAMWVLRESEWTTNAPMWPCDKMDILNRHNLLCTLVDKYLGKSLYRQAFEVLQNLPGFQNHSDTVDVSQYSCLFNKLINACFESKNLGVSSSAVDFMLSKNIAIDIFLLRGLITALGRSSLWSKARTYYKSALSLGCYPPLQGNLYHRILTIPSSLSEVEMLLAIEIFLVSNASVIQSPMAISQTLQIILKRCEDQTVQGNSDYQAAVERLILAARLSDPKLFLKHMTMNVNMEEVYSLELISALRWLQENMKWAGKVWLFQ"
misc_feature 1101..1628 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" misc_feature 1746..1826 /gene="TOPAZ1" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 1842..1931 /gene="TOPAZ1" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" ORIGIN
atggtttttgctttattgtttttttagaactgaaaatcagacaaggtttcacaaggttttcctgtttaagacagactacattatccattatgctgggcactaaaaaagggtaaattgatgtcccagaattctcagattgttatccaaagccatggaggagtttgtcacttttcttcctcctctctactcattgtctgtctcatttagcagttcttgcattctctctgtctgtggtcttcaagacagatttttgttgtgttagacattaacatgacatgacaagtgattgatctggtctactttgaattgctgcaaatatagtacagagatgagggttgtttcaaaggtttaattgtagatcatgtattttttatttataatttgtaggtattctgaattcaccaaaaaatgagcatgtttgctttcaaaaatgctgttcgtttttttctgcttgtttttattttattttgttttaggcttctcattcagtccagcagatcctcgatacgattgaattgccccgtaaatattgcaaattttatttcatgactttgcgtgggtgtgaaagagcaaaatgttggttttggcatgttcctgaacaaggagatgaaaagatttgcatggcaatacttaggacatacattagtatcaaagaatcaggccttctaaaacgtgcagcccaaatatttgtgaaatattacagagaagttactcccggtgtggattttgcttctcaagtgctgaatgatcttctcatttctttgcttgagaactctttgttgcaggaagtatttcacctattgaatgtaactgtacaaatcaatacactgccagctgtaggtgttcttctgaaagtttttgagcatgtggcctctttgaatattacagatgctgtgcctccattaatcagtacttttcgtaagctcattgatgctggtatgttccttgagtttgaacattttgaccgtattattaaggtccttcaccaattgcaagtttccagtcaggaaataaacattgttttgaacataaaatccagatttcaggaaagacattttgaaaagaactggctttttgacttcaacttggcagttgctgaaattcagcattgcaaggaaaaaagtgattggatgaagctgggagctttgtatgttaatgcgagaactggatgtgaacattataatgatcttcagaagctgtctttatgtattgctgaaatactaaccaaagattctgagacacacagaccagaagttcctttttgtgattttgctgatgcagtaataaaaaatccacaacataatgaagaagacagaattttcattggaaggattggaataagtgtaatgtattcttaccacaaagtactgcagtggataaagggaaggaaggttttggataaattgtgtgagatgcagatacattttacagtcttgaaaggtcttctaggtgcagagaggttagcatcaagatgtcaaattgttaataaagctgcagaaatttttcttaaaactggacatttggatggagcaatgtgggtattgagagagtcagagtggaccacaaatgcaccaatgtggccctgtgataaaatggacatcctcaatcgacataatctgctgtgtacactagtggacaaatacctagggaagagtttatacaggcaggcatttgaagttctgcagaacttaccaggctttcaaaatcattctgatactgtagatgtttctcagtacagctgcctttttaacaagttgataaatgcctgttttgagagcaagaaccttggagtctcatcttctgcagtagacttcatgctttcaaaaaatatagcgatagatatttttctacttagaggattaatcacagctttgggaagaagttctttgtggtctaaagctaggacctattacaaaagtgctttatcattgggttgctacccaccactgcagggaaatttatatcacagaattttgacgattccatcttccctgtctgaagttgagatgctgttggccattgaaatatttcttgtttcaaatgccagtgttattcagagtccaatggctattagtcagactcttcagataatactgaaaagatgtgaagatcagacagttcagggtaacagtgactatcaagcagcagtggagagactgatcctggcggctcgtttatcggatccaaagctttttcttaagcatatgacaatgaatgttaatatggaagaagtttacagcttggagcttatatctgctctaaggtggcttcaggagaatatgaagtgggctgggaaagtctggctgtttcagtagtcattaaatagtaaagacttggtttgtaatggctaaagcaatcattgttgaaaataatgcaaattaataaaggcagttcccactgggttcagactgtgccttactgatttacagcaaggcttcatactcgt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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