2024-04-27 10:58:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_013087614 3766 bp mRNA linear INV 31-AUG-2020 DEFINITION PREDICTED: Aplysia californica protein argonaute-2 (LOC101863465), transcript variant X6, mRNA. ACCESSION XM_013087614 VERSION XM_013087614.2 DBLINK BioProject: PRJNA209509 KEYWORDS RefSeq. SOURCE Aplysia californica (California sea hare) ORGANISM Aplysia californica Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Tectipleura; Aplysiida; Aplysioidea; Aplysiidae; Aplysia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004797880.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 31, 2020 this sequence version replaced XM_013087614.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Aplysia californica Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3766 /organism="Aplysia californica" /mol_type="mRNA" /isolate="F4 #8" /db_xref="taxon:6500" /chromosome="Unknown" /sex="hermaphrodite" gene 1..3766 /gene="LOC101863465" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:101863465" CDS 127..2883 /gene="LOC101863465" /codon_start=1 /product="protein argonaute-2 isoform X6" /protein_id="XP_012943068.1" /db_xref="GeneID:101863465" /translation="
MFPMQPGPGGYGQPPTGQPGLHFPFPGMQAQDVPPPPVTTPITPSLTQTEQPPPLPFAQGQVPQESLVPPVQQADFVSPPRPNTGTEGRSISLRANHFQVRVPKGIIHHYEVNISPDKCPRRVNREIIDTMVTAYQQKIFQGQKPVFDGRKNLYSREPLPVGTEKVELEVTLPGEGRDRVFKVAVRYVGQVSLFALEEALEGRTRQIPMDAIQALDVVMRHLPSKTYTPVGRSFFSPPEGYDHPLGGGREVWFGFHQSVRPSHWKMMLNIDVSATAFYKEQPVIEFMCEVLDLPDISEQKRPLADSQRVKFTKEIKGLKVEITHCGTMRRKYRVCNVTRRPAQTQSFPLQLNTGQTIECTVARYFMEKYKMKLQHPHLPCLQVGQEQKHTYLPLEVCNIVGGQRCIKKLTDMQTSTMIKATARSAPDREKEINNLIRKANFNADPYLQTFGISINTQMMDVQGRVLTAPKLQYGGRTKAQAIPNQGVWDMRGKQFYQGIEIRVWAIACFAPQRTVREDALRNFTQQLQRISNDAGMPIMGQPCFCKYASGPDQVEPMFRYLKNTYQGLQLIVVVLPGKTPVYAEVKRVGDICFGLATQCAQAKNVNKTTPQLLSNLCLKINVKLGGVNSILLPSIRPHVFREPIIFLGADVTHPPAGDTLKPSIAAVVGSMDAHPSRYSATVRVQEHRQEIIRDLATMVKDLLIQFYRSTSFKPTRIIFYRDGVSEGQFQTVLGHELRAVREACMKLEVEYQPGITFIVVQKRHHTRLFCADRRDQTGRSGNIPAGTTVDQGITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFNADELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSDDFFSSGEGSRHSDNSEDRNPLYLARAVTVHQDTYRVMYFA"
misc_feature 391..783 /gene="LOC101863465" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 811..963 /gene="LOC101863465" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 964..1326 /gene="LOC101863465" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1120..1122,1165..1167,1207..1209,1219..1221, 1273..1275,1294..1296,1300..1302) /gene="LOC101863465" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1459..2736 /gene="LOC101863465" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1870..1872,1882..1884,1918..1929,1936..1938, 1960..1962,1969..1971,1981..1983,1993..1995) /gene="LOC101863465" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2074..2076,2080..2082,2290..2292,2704..2706) /gene="LOC101863465" /note="active site" /db_xref="CDD:240015" ORIGIN
cagagaggaagtagccaaagacatgaatcaaaatggcgtaaggctccagttggataccctttgtcattgatagcgaacgtttaattccaattttctgtgatttcggtgaccaggaaaccaatttcaatgtttcctatgcaaccagggcctggcggctatggccagcctccgacaggccaaccaggtcttcattttccatttcctgggatgcaagctcaggatgtcccacccccacccgtgaccacgcccatcacgccctccctcacacagacagagcagcccccgccccttcccttcgcccagggccaggtcccccaggagtcgctggtgccgccagtgcagcaggccgactttgtgtccccgccacggcccaacacgggcaccgagggccgctccatctcgctgcgggccaaccacttccaggtgcgcgtgcccaagggcatcatccaccactacgaggtgaacatctcccccgacaagtgcccgcgcagggtcaacagagaaatcatcgacacaatggtaactgcttaccaacagaagatcttccagggccagaagcctgtctttgacggaaggaaaaacttgtacagtagggaacctcttccagtgggaacagaaaaggttgaactggaagtgacattgccaggggagggtcgggacagggtgttcaaagttgccgtccgctatgtgggtcaggtcagcctgttcgctctagaggaggcgctggaaggtcgtacccgacagatccccatggacgctatacaggccctagacgtagtcatgaggcaccttccaagcaaaacctatactcctgtgggccgctccttcttctcaccaccagagggttatgatcacccgcttggaggtgggcgagaggtatggtttggtttccatcagtctgtgcgaccatcccactggaaaatgatgctgaacatcgatgtgtctgccactgccttctacaaagaacaaccagttattgagtttatgtgtgaagtgctggatttgccagatatcagcgaacagaagcggcctctggcagattcacaacgagtcaaatttacgaaagaaatcaaaggtcttaaagtggaaatcacccactgtggtacgatgaggcgcaagtacagagtatgcaacgtcacaagacgacctgctcaaacgcaatcattccccttacaactaaacactggtcaaacaattgaatgcaccgtggctcgctacttcatggaaaagtacaaaatgaaattacaacatccacatttgccttgtcttcaagtggggcaggaacaaaaacacacatatctgcctctcgaggtgtgtaacatagtgggaggccagcgctgcatcaagaagctgactgacatgcagacatccaccatgatcaaggccacagcgaggtcagctccagacagagagaaagaaatcaacaatttgatccgtaaggccaacttcaatgctgacccctatctccaaaccttcggcatcagtatcaacacacaaatgatggatgttcagggtcgtgtgttaacggctcctaagttgcaatacggtggacggaccaaagcccaagccattcccaaccaaggtgtgtgggatatgagaggcaaacagttctaccagggaatcgagatccgggtgtgggccatcgcctgcttcgccccgcagagaactgtcagggaagatgccttgaggaacttcacgcagcagctccagcgtatctccaacgacgccggcatgcccatcatgggccagccctgtttctgcaagtacgcctcggggccggaccaggtggagcccatgttccgctacctcaagaacacctaccagggcctgcagctcatcgtggtggtgctgccgggcaagacgccagtctatgccgaagtgaaacgtgtgggcgacatctgttttggtcttgccacgcagtgtgcccaggccaagaacgtgaacaaaaccactccccagctcctgtccaatctctgccttaagatcaacgtgaagctgggaggtgtgaatagcatcctgctgcccagtatcaggcctcatgtgtttagagagcccatcatattccttggtgccgatgtgacccacccacctgcaggcgacacactcaagccttccattgctgccgtggtaggtagtatggacgctcaccccagtcgctactcggcaacggttcgggtccaagagcaccggcaggagatcattcgtgacctggccaccatggttaaggatctgctcattcagttctatcgctccactagcttcaagcccacccgcatcatcttctaccgtgacggggtcagtgagggacagttccagacggtactgggacacgaactccgcgcagtccgtgaagcctgtatgaagctggaggtggagtaccagccgggcatcaccttcatcgtggtccagaagcgccaccacacgcggctgttctgcgccgaccgcagggaccagacgggccgcagcggcaacattcccgccggcaccacagtagaccagggcatcacgcaccccaccgagtttgatttctacctgtgctcacatgctggtatacagggcaccagccggccttcgcactaccacgtgctgtgggatgacaaccgcttcaacgcggatgagctccagatcctgacgtaccagctgtgccacacctacgtgcgctgtacgcgctcagtctccatccccgccccggcctattacgcccacctggtggccttccgggcgcgctaccacctggtggagaaggagcacgacagtgatgactttttctccagcggcgaaggctcccgccactcggacaacagcgaggaccgcaaccccttgtacctggccagggcggtcaccgtgcaccaggatacctatcgcgtcatgtactttgcctagttggaaactttgaacattgctgctttggacagttcagactttggaagaaagtgcatccccccagggataaagacttgtgggagtagctgttgacatttgtgaaaatgaagggaagcgaatgagtatggatgtcatcgtctcaccgaagtggacatcattgaacagactgatgtcttgtgtccaaatgactacttcacttggatgtgtttttagagagacactctgtggttggtttagccgaagaatgacaaaatctgcttatgttttgattttggaatgtatttttgtgaagcagtttttgtttgtaagacatttgattttctcttcttttggtccagccagtttctagacacctagtggaatgatacagatcaagggtaaaatggtacacaacgaagtggctggcataaagtgtgagaaagactgtcttttatgattgctgtagctgatgctgtaacgttgtacacgtctgtgtttagtgtctagctgggctccgtttaggaggtgcaattgtccctcaccgaaatcaaacttccaactgcatcagcataaggaagatctgggggaaaggacaagaaagggcagctgtgttttagaaaaaggactacctgagtgagggggaaataataaggcatcactctgttcctgtggaaaactagtcgtacattttatcactatttgtcttttgtactcaccaaaacaaaacttgagacatgttgatcattgatatttactttttttttttaccctttctttttttttctttttcattgtggttgaatgttttatgatgtgaacacattgctatgcatttgtaccacatctcatccaactgtatttttgcttcagtttaaaacaaaaataaaagccttgttgtagctga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]