2024-03-29 22:40:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011430813 4138 bp mRNA linear INV 18-MAY-2020 DEFINITION PREDICTED: Crassostrea gigas protein argonaute-2 (LOC105329532), transcript variant X1, mRNA. ACCESSION XM_011430813 VERSION XM_011430813.3 DBLINK BioProject: PRJNA629593 KEYWORDS RefSeq. SOURCE Crassostrea gigas (Pacific oyster) ORGANISM Crassostrea gigas Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047559.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 18, 2020 this sequence version replaced XM_011430813.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Crassostrea gigas Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4138 /organism="Crassostrea gigas" /mol_type="mRNA" /db_xref="taxon:29159" /linkage_group="1" gene 1..4138 /gene="LOC105329532" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 223 samples with support for all annotated introns" /db_xref="GeneID:105329532" CDS 150..2987 /gene="LOC105329532" /codon_start=1 /product="protein argonaute-2 isoform X1" /protein_id="XP_011429115.1" /db_xref="GeneID:105329532" /translation="
MFPIAPGITSILHNQQLNGGQTPFSPFPAMQEGQSSIPFSTFPTEGQSSGLPFTSFPTDGQTSIPFSVFPPVQPPEGGFAFPPPQPPPGPPSGPPKPPGPPGPPKPSDFICPPRPNYGTEGKPILLRANHFQVRIPKGVLHHYDISIVPDKCPRRVNREIIETMVTAYSQKIFSGQKPVFDGRKNLYSREPLPIGREKVELEVTLPGEGKDRVFNITMKWVQQISLFGLEEALQGHTREIPQDAITAVDIIMRHLPSMTYTPVGRSFFSPPEGYDHPLGGGREVWFGFHQSVRPSHWKMMLNIDVSATAFYKAQPVIEFMCEVLDIKDVNEQKRPLTDSQRVKFTKEIRGLKVEITHCGTMRRKYRVCNVTRRPAQTQSFPLQLDSGQTVECTVARYFLERYKMKLQYPHLPCLQVGQEQKHTYLPLEVCNVVGGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRKANFNADPFLQTFGININPMMCDLQGRVLHPPKILYGGRTKAQAVPNQGVWDMRGKQFYSGTEIRVWAIACFAPQRTVREDALRNFTQQLQRISNDAGMPILGQPCFCKYATGPDQVEPMFRYLKNTYQGLQLIVVVLPGKTPVYAEVKRVGDILFGLATQCVQAKNVNKTTPQTLSNLCLKINVKLGGINNILLPSIRPSIFREPVIFLGADVTHPPAGDASKPSIAAVVGSMDAHPSRYSSTVRVQQHRQEIIQELSSMVRELLIHFYKATRFKPTRIIFYRDGVSEGQFQQVLQHELRAVREACMKLELGYQPGITFIVVQKRHHTRLFCADRKDQIGRSGNIPAGTTVDVGITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFNADELQTLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSRHSDNSEDRTPSAMARAVTVHPDTTKVMYFA"
misc_feature 513..905 /gene="LOC105329532" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 933..1085 /gene="LOC105329532" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1086..1448 /gene="LOC105329532" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1242..1244,1287..1289,1329..1331,1341..1343, 1395..1397,1416..1418,1422..1424) /gene="LOC105329532" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1581..2858 /gene="LOC105329532" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1992..1994,2004..2006,2040..2051,2058..2060, 2082..2084,2091..2093,2103..2105,2115..2117) /gene="LOC105329532" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2196..2198,2202..2204,2412..2414,2826..2828) /gene="LOC105329532" /note="active site" /db_xref="CDD:240015" ORIGIN
accggatataggcgtcgcgtcgcgattgaagcgccctctttggctctagtcatagttgtgaacattgctcaaaattacaaagtcaaagtgaatttacgaagcctttgagggcacaatttacagataatctgtaaacatataatgccaatatgtttccgatagcgccaggtatcacaagcatactgcacaaccagcagcttaacggtggacagacccccttctcacctttccctgctatgcaggaaggtcagtcgtccattccattctcaacatttccaacagaaggtcaatcttcaggcctgccgttcacatctttcccaacagatggccagacttcgattccgttttcggtattcccacccgttcagccaccggagggaggatttgccttcccccctcctcagcccccacctggcccgccttcaggaccacccaagccaccaggacctcccggtcctcccaaaccatcggactttatatgtccgccccgtcccaactacgggacggagggcaaaccaatcctactgcgtgccaatcatttccaagtgcgtattcccaagggagttcttcaccactacgatatttcaatagtgcctgacaaatgtccacgaagagtcaacagggagattattgagacaatggtaactgcttatagccagaaaatcttctcagggcagaaaccggtgtttgatggacgcaaaaacctctacagtcgcgagcctcttcccattggtcgagaaaaggtggagctggaagttactctcccgggggagggcaaggaccgcgtctttaacataacaatgaaatgggtccagcagatcagcctgtttgggctggaggaagcactgcagggccacacccgggagattccccaggacgcaatcaccgccgtcgatattatcatgcgtcacttgccaagtatgacatacactcctgtgggacgttcattcttctccccaccggaggggtacgaccaccccctgggagggggcagggaggtgtggttcggcttccatcagagtgtgaggccctcccactggaaaatgatgctcaacattgacgtatctgccactgccttttacaaagcgcagcctgtgatagagttcatgtgtgaagtgttggatatcaaagacgtcaacgaacagaaacgccccctcaccgattctcagagggtcaaatttacgaaggaaatcagaggactcaaggtagagatcactcactgtggaaccatgagacgtaaatatcgcgtgtgtaacgtgactcgacgacccgcccagacacagtcgtttcccctgcagctggactcgggacagaccgtggagtgtaccgtggcccgctacttcctggagcgatacaaaatgaagctacaataccctcacttgccatgcttacaagtcggccaggaacagaagcacacctatcttcctctggaggtgtgtaacgtggtgggcggccagaggtgtatcaagaagctgaccgacatgcagacctccaccatgatcaaggccacagcccgatctgccccggacagagagagagaaatcaacaaccttgtgaggaaagccaacttcaacgctgatccatttctacaaacatttggaataaacatcaacccaatgatgtgtgacctccagggcagagttcttcatcctcccaaaatcctgtatggaggaaggaccaaagcccaggcagtgccaaaccaaggtgtctgggacatgaggggcaagcagttctactcggggacggagatcagggtgtgggccatcgcttgtttcgccccccagaggacggtcagggaggacgctctcagaaacttcacccagcagctacaaaggatctcgaacgacgctgggatgcccattctaggccagccttgtttctgtaaatacgccacaggccctgatcaggtggagcccatgttccgatatctcaagaacacttaccaaggcctccagctcatcgtcgttgtactgccgggaaaaacacctgtatatgctgaggtgaagcgtgtgggtgacattttatttggattagccacacaatgtgttcaagccaaaaacgtgaacaaaacgaccccccagaccctgtccaatctctgcctcaagatcaacgtcaagctgggcggtatcaacaacatccttctgccaagtattcgtccctccatatttagagagcccgtcatattcctgggtgctgatgtgactcatccccccgcaggagatgccagtaaaccatccatagctgcagtggtaggcagcatggacgcccaccccagccgctactcctccacggtacgagtccagcagcacagacaggaaatcatacaggagttgtcttccatggtgcgggaactcctgatccacttctacaaggcgacgcgattcaagccgacgcgcatcatcttctacagagacggcgtcagtgagggacagttccagcaggtgttacagcacgagctgcgtgccgtgagagaggcctgcatgaagctggagctgggataccagcccggtattaccttcatcgtggtccagaagagacaccacacccgactgttctgtgccgaccgcaaggaccagataggacgaagcggaaatatcccggccggaaccaccgtggatgtcggaatcacccaccccacagagtttgatttttacctgtgtagtcatgctggtatacagggcaccagtcgcccctctcactaccacgtcctgtgggacgacaaccggttcaacgcggacgagctccagacgctgacctaccagctgtgtcacacctatgtccgctgtacccgcagtgtctccatccccgcccctgcttactatgcacatctagtcgccttccgggcccgctaccacctggtggagaaagagcacgacagtggagaggggagtcggcactcggacaacagtgaggacaggaccccctcagccatggcccgggcggtcaccgttcaccccgacacaaccaaggtcatgtacttcgcctgatcaggggagatcaatccaggccctgtgttgttccttcctgggagggagaattctctgcatttttatgtattcagcgaaaaaaaaaaatgtgtggttcagatagactgtgctagaaccacgcgtgggtattaactatttattgtatagaactgtgcttttatttttgtttttacaagtagtcatggaaaccatttttgacctggtagagcatacattccactatttctacgattttttttaaaacttgatgcatccttgacacaattttgcagcttgttgttgccattagaggtgcatgtggtgcttagaagctcaaaatgaatcttctgccataactgaggaaatctcagcagcgtttcgattgttatatgagatgccatttcataagcatatctacatttcagtcattccatgtatttgggtgtgagcccactatggcacaatactccctgcccctccattatagcttagcatatcatttgttgtattagctatttatgttttcgacttgccattgtttattttatagtcccaccaaaagcagcggtaacagtccacctatgtcagagactagcaatgccacctgtcaaagggagaaaaccccctctttatttgctaccactttattttctttcttgtagtcccgttgtgtataggttcctatttatagtccagtagtattgtattttttttttattattaatctattgtttgagagaaaagaaaaaaatacaaaaacaaacctgtgaccttatgaccctgcataattagtctagtcatgttgtgtaatgagcatatcatgtcgtctcggggtgatgttgtatccatatcacgagccttccagacagatcgggacgtagcagccgtcaactacttactgaaccctcgcctgtgatatgcctcagtgaactccgtggtgtgtggtccactggtttcatggtgttgtgtaaggcccccctaccccctctctctctctctctctctcagtcccacacaggagaagcaggcatggaagggtgctctctgatgacttcactctctacctctccgatgacaatctctagattctcttctgtgctttatgtctttcctcttctccccacccttcaaatacaaaacaaaaagtgcaataagtagcattacaaagtaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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