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2024-03-29 22:40:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_011430813            4138 bp    mRNA    linear   INV 18-MAY-2020
DEFINITION  PREDICTED: Crassostrea gigas protein argonaute-2 (LOC105329532),
            transcript variant X1, mRNA.
ACCESSION   XM_011430813
VERSION     XM_011430813.3
DBLINK      BioProject: PRJNA629593
KEYWORDS    RefSeq.
SOURCE      Crassostrea gigas (Pacific oyster)
  ORGANISM  Crassostrea gigas
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
            Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
            Crassostrea.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_047559.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 18, 2020 this sequence version replaced XM_011430813.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Crassostrea gigas Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4138
                     /organism="Crassostrea gigas"
                     /mol_type="mRNA"
                     /db_xref="taxon:29159"
                     /linkage_group="1"
     gene            1..4138
                     /gene="LOC105329532"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 55 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 223 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:105329532"
     CDS             150..2987
                     /gene="LOC105329532"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X1"
                     /protein_id="XP_011429115.1"
                     /db_xref="GeneID:105329532"
                     /translation="
MFPIAPGITSILHNQQLNGGQTPFSPFPAMQEGQSSIPFSTFPTEGQSSGLPFTSFPTDGQTSIPFSVFPPVQPPEGGFAFPPPQPPPGPPSGPPKPPGPPGPPKPSDFICPPRPNYGTEGKPILLRANHFQVRIPKGVLHHYDISIVPDKCPRRVNREIIETMVTAYSQKIFSGQKPVFDGRKNLYSREPLPIGREKVELEVTLPGEGKDRVFNITMKWVQQISLFGLEEALQGHTREIPQDAITAVDIIMRHLPSMTYTPVGRSFFSPPEGYDHPLGGGREVWFGFHQSVRPSHWKMMLNIDVSATAFYKAQPVIEFMCEVLDIKDVNEQKRPLTDSQRVKFTKEIRGLKVEITHCGTMRRKYRVCNVTRRPAQTQSFPLQLDSGQTVECTVARYFLERYKMKLQYPHLPCLQVGQEQKHTYLPLEVCNVVGGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRKANFNADPFLQTFGININPMMCDLQGRVLHPPKILYGGRTKAQAVPNQGVWDMRGKQFYSGTEIRVWAIACFAPQRTVREDALRNFTQQLQRISNDAGMPILGQPCFCKYATGPDQVEPMFRYLKNTYQGLQLIVVVLPGKTPVYAEVKRVGDILFGLATQCVQAKNVNKTTPQTLSNLCLKINVKLGGINNILLPSIRPSIFREPVIFLGADVTHPPAGDASKPSIAAVVGSMDAHPSRYSSTVRVQQHRQEIIQELSSMVRELLIHFYKATRFKPTRIIFYRDGVSEGQFQQVLQHELRAVREACMKLELGYQPGITFIVVQKRHHTRLFCADRKDQIGRSGNIPAGTTVDVGITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFNADELQTLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSRHSDNSEDRTPSAMARAVTVHPDTTKVMYFA"
     misc_feature    513..905
                     /gene="LOC105329532"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    933..1085
                     /gene="LOC105329532"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1086..1448
                     /gene="LOC105329532"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1242..1244,1287..1289,1329..1331,1341..1343,
                     1395..1397,1416..1418,1422..1424)
                     /gene="LOC105329532"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1581..2858
                     /gene="LOC105329532"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1992..1994,2004..2006,2040..2051,2058..2060,
                     2082..2084,2091..2093,2103..2105,2115..2117)
                     /gene="LOC105329532"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2196..2198,2202..2204,2412..2414,2826..2828)
                     /gene="LOC105329532"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
accggatataggcgtcgcgtcgcgattgaagcgccctctttggctctagtcatagttgtgaacattgctcaaaattacaaagtcaaagtgaatttacgaagcctttgagggcacaatttacagataatctgtaaacatataatgccaatatgtttccgatagcgccaggtatcacaagcatactgcacaaccagcagcttaacggtggacagacccccttctcacctttccctgctatgcaggaaggtcagtcgtccattccattctcaacatttccaacagaaggtcaatcttcaggcctgccgttcacatctttcccaacagatggccagacttcgattccgttttcggtattcccacccgttcagccaccggagggaggatttgccttcccccctcctcagcccccacctggcccgccttcaggaccacccaagccaccaggacctcccggtcctcccaaaccatcggactttatatgtccgccccgtcccaactacgggacggagggcaaaccaatcctactgcgtgccaatcatttccaagtgcgtattcccaagggagttcttcaccactacgatatttcaatagtgcctgacaaatgtccacgaagagtcaacagggagattattgagacaatggtaactgcttatagccagaaaatcttctcagggcagaaaccggtgtttgatggacgcaaaaacctctacagtcgcgagcctcttcccattggtcgagaaaaggtggagctggaagttactctcccgggggagggcaaggaccgcgtctttaacataacaatgaaatgggtccagcagatcagcctgtttgggctggaggaagcactgcagggccacacccgggagattccccaggacgcaatcaccgccgtcgatattatcatgcgtcacttgccaagtatgacatacactcctgtgggacgttcattcttctccccaccggaggggtacgaccaccccctgggagggggcagggaggtgtggttcggcttccatcagagtgtgaggccctcccactggaaaatgatgctcaacattgacgtatctgccactgccttttacaaagcgcagcctgtgatagagttcatgtgtgaagtgttggatatcaaagacgtcaacgaacagaaacgccccctcaccgattctcagagggtcaaatttacgaaggaaatcagaggactcaaggtagagatcactcactgtggaaccatgagacgtaaatatcgcgtgtgtaacgtgactcgacgacccgcccagacacagtcgtttcccctgcagctggactcgggacagaccgtggagtgtaccgtggcccgctacttcctggagcgatacaaaatgaagctacaataccctcacttgccatgcttacaagtcggccaggaacagaagcacacctatcttcctctggaggtgtgtaacgtggtgggcggccagaggtgtatcaagaagctgaccgacatgcagacctccaccatgatcaaggccacagcccgatctgccccggacagagagagagaaatcaacaaccttgtgaggaaagccaacttcaacgctgatccatttctacaaacatttggaataaacatcaacccaatgatgtgtgacctccagggcagagttcttcatcctcccaaaatcctgtatggaggaaggaccaaagcccaggcagtgccaaaccaaggtgtctgggacatgaggggcaagcagttctactcggggacggagatcagggtgtgggccatcgcttgtttcgccccccagaggacggtcagggaggacgctctcagaaacttcacccagcagctacaaaggatctcgaacgacgctgggatgcccattctaggccagccttgtttctgtaaatacgccacaggccctgatcaggtggagcccatgttccgatatctcaagaacacttaccaaggcctccagctcatcgtcgttgtactgccgggaaaaacacctgtatatgctgaggtgaagcgtgtgggtgacattttatttggattagccacacaatgtgttcaagccaaaaacgtgaacaaaacgaccccccagaccctgtccaatctctgcctcaagatcaacgtcaagctgggcggtatcaacaacatccttctgccaagtattcgtccctccatatttagagagcccgtcatattcctgggtgctgatgtgactcatccccccgcaggagatgccagtaaaccatccatagctgcagtggtaggcagcatggacgcccaccccagccgctactcctccacggtacgagtccagcagcacagacaggaaatcatacaggagttgtcttccatggtgcgggaactcctgatccacttctacaaggcgacgcgattcaagccgacgcgcatcatcttctacagagacggcgtcagtgagggacagttccagcaggtgttacagcacgagctgcgtgccgtgagagaggcctgcatgaagctggagctgggataccagcccggtattaccttcatcgtggtccagaagagacaccacacccgactgttctgtgccgaccgcaaggaccagataggacgaagcggaaatatcccggccggaaccaccgtggatgtcggaatcacccaccccacagagtttgatttttacctgtgtagtcatgctggtatacagggcaccagtcgcccctctcactaccacgtcctgtgggacgacaaccggttcaacgcggacgagctccagacgctgacctaccagctgtgtcacacctatgtccgctgtacccgcagtgtctccatccccgcccctgcttactatgcacatctagtcgccttccgggcccgctaccacctggtggagaaagagcacgacagtggagaggggagtcggcactcggacaacagtgaggacaggaccccctcagccatggcccgggcggtcaccgttcaccccgacacaaccaaggtcatgtacttcgcctgatcaggggagatcaatccaggccctgtgttgttccttcctgggagggagaattctctgcatttttatgtattcagcgaaaaaaaaaaatgtgtggttcagatagactgtgctagaaccacgcgtgggtattaactatttattgtatagaactgtgcttttatttttgtttttacaagtagtcatggaaaccatttttgacctggtagagcatacattccactatttctacgattttttttaaaacttgatgcatccttgacacaattttgcagcttgttgttgccattagaggtgcatgtggtgcttagaagctcaaaatgaatcttctgccataactgaggaaatctcagcagcgtttcgattgttatatgagatgccatttcataagcatatctacatttcagtcattccatgtatttgggtgtgagcccactatggcacaatactccctgcccctccattatagcttagcatatcatttgttgtattagctatttatgttttcgacttgccattgtttattttatagtcccaccaaaagcagcggtaacagtccacctatgtcagagactagcaatgccacctgtcaaagggagaaaaccccctctttatttgctaccactttattttctttcttgtagtcccgttgtgtataggttcctatttatagtccagtagtattgtattttttttttattattaatctattgtttgagagaaaagaaaaaaatacaaaaacaaacctgtgaccttatgaccctgcataattagtctagtcatgttgtgtaatgagcatatcatgtcgtctcggggtgatgttgtatccatatcacgagccttccagacagatcgggacgtagcagccgtcaactacttactgaaccctcgcctgtgatatgcctcagtgaactccgtggtgtgtggtccactggtttcatggtgttgtgtaaggcccccctaccccctctctctctctctctctctcagtcccacacaggagaagcaggcatggaagggtgctctctgatgacttcactctctacctctccgatgacaatctctagattctcttctgtgctttatgtctttcctcttctccccacccttcaaatacaaaacaaaaagtgcaataagtagcattacaaagtaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]