2024-04-23 17:15:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011419586 5852 bp mRNA linear INV 18-MAY-2020 DEFINITION PREDICTED: Crassostrea gigas protein argonaute-2 (LOC105321320), transcript variant X5, mRNA. ACCESSION XM_011419586 VERSION XM_011419586.3 DBLINK BioProject: PRJNA629593 KEYWORDS RefSeq. SOURCE Crassostrea gigas (Pacific oyster) ORGANISM Crassostrea gigas Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047559.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 18, 2020 this sequence version replaced XM_011419586.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Crassostrea gigas Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5852 /organism="Crassostrea gigas" /mol_type="mRNA" /db_xref="taxon:29159" /linkage_group="1" gene 1..5852 /gene="LOC105321320" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 179 samples with support for all annotated introns" /db_xref="GeneID:105321320" CDS 130..2784 /gene="LOC105321320" /codon_start=1 /product="protein argonaute-2 isoform X5" /protein_id="XP_011417888.1" /db_xref="GeneID:105321320" /translation="
MFPIAPGSTFGPFTTVPPPEPPPHPADQPPPTPPPPSNGNAGEFICPLRPDHGREGKPIALRANHFHVNIPKGFIHHYNVAITPDKCPRRVNREIVETMVNAYTPRIFSGQKPVFDGREKLYSREPLPFGKDKVELEVTLPGEGRDRVFKVAIKWLSQISLYALEEALEGRARRIPECAVEALDVIMRHLPSMMYTPVGRSFFSPPEDYDYPLGGGREVWFGFHQSVRPSHWKMMLNIDVSATAFYKAQPVIDFMCEILELKDANEQRRPLTDSQRVKFTKEIRNLKVEITHCGTMRRKYRVCNVTRRPAQTQSFPLQLDSGQTVDCTVARYFLERYKMKLQHPHLPCLQVGQEHKHTYLPLEVCNVVGGQRCIKKLTDLQTATMIRATAKNAPDREKEINNLVKKASYNNDPHLRTFGITVNPQMMDLHGRVLSHPKLQYGGTNSEFQTKAQALPNQGVWDMRGKQFYFGIEIRVWAIACFAPQRSVREDALRNFTQQLQKISTDAGMPILGQPCFCKYATGPDQVEPMFRYLKNTYAGLQLIVVVLPGRTPVYAEVKRVGDILFGLATQCVQSKNVNKTSPQTLSNLCLKINVKLGGINNILLPSSRPLVFREPVIFLGADVTHPPAGDTSKPSIAAVVGSMDAHPSRYSATVRVQEHRKEVIEEFCSMVRELLISFYKSTQFKPTRIIIYRDGVSEGQFQKVLAHELRAVREACMKLEIGYQPGITFIAVQKRHHTRLFCADRKDQIGRSGNIPAGTIVDVGITHPTQFDFYLCSHAGIQGTSRPSHYHVLWDDNCFKADELQQLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSRHSDEMERTPSAMARAITVHPDTIKVMYFA"
misc_feature 298..690 /gene="LOC105321320" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 718..870 /gene="LOC105321320" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 871..1233 /gene="LOC105321320" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1027..1029,1072..1074,1114..1116,1126..1128, 1180..1182,1201..1203,1207..1209) /gene="LOC105321320" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1366..2658 /gene="LOC105321320" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1792..1794,1804..1806,1840..1851,1858..1860, 1882..1884,1891..1893,1903..1905,1915..1917) /gene="LOC105321320" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1996..1998,2002..2004,2212..2214,2626..2628) /gene="LOC105321320" /note="active site" /db_xref="CDD:240015" ORIGIN
tcagaattttttggggtgattagtgtaacgtcaatcgtgcgccatattttcttttgacaaaagatgaaaatgacagaagtttgtttacctctcctgatttaccattttccctcgtcataagatgtcataatgtttcctattgcaccagggtccacctttggtccttttaccacagtccccccaccagaacctccaccccacccagctgatcagccaccccccacccctccacctccatctaatgggaatgccggggagtttatctgccccctcaggcctgaccatggacgggagggaaaacccattgctctacgggccaaccattttcatgtcaacatccctaaagggttcatccaccactacaacgtcgccattacacctgacaaatgtccccgacgagtcaacagagagatcgtggagaccatggttaatgcctacacaccccggatcttctccggacagaagcctgtgtttgatggcagagagaaactgtacagtcgagaaccacttccattcggcaaagataaagtggagttagaggtcaccctgccaggtgaaggtcgtgaccgggtgttcaaggtcgccattaagtggctgtcccagatcagtctatacgccctggaggaggcgttagaggggcgtgcccggaggattccagagtgtgcggtggaggcgctggacgtcatcatgaggcacctccccagcatgatgtacacccctgtgggtcgttcattcttctctcccccggaggactatgactaccccctgggagggggcagggaggtgtggttcggcttccatcagagcgtccgtccctcccactggaaaatgatgctcaacattgatgtatcggccacagccttctataaagctcaaccggttatcgacttcatgtgtgaaatcttggagctgaaggacgccaacgaacagcgacgcccactgaccgattcccagcgggtcaagttcaccaaggaaatcagaaacctgaaggtagaaatcacccactgtggaaccatgaggaggaaatatagagtttgtaacgtcactcgcagacccgcacaaactcagtcatttccgctacagctggactcgggtcagacagtggactgtacggtcgctcggtacttcctggagcgctacaaaatgaagctacaacaccctcacctgccgtgtttacaagttggacaggaacataagcacacatatcttccattagaggtttgtaatgtcgttggaggccagagatgtatcaagaagctgacagacctacagacggccaccatgatcagggcgacagccaagaacgcccccgacagagagaaggaaatcaacaatctggtcaagaaggccagttataacaatgacccccacctgaggacgtttggaatcacagtaaacccccagatgatggatctacacggccgggtcctctctcaccccaaactacagtacgggggaacgaattcggaatttcagacgaaagcccaggccctgccgaaccagggcgtgtgggacatgcgagggaagcagttctattttgggatcgagatccgtgtgtgggccatagcatgcttcgccccccagaggagcgtgagggaggatgcattgaggaactttacccagcagttacagaagatttctacggacgcaggcatgcccattcttggtcagccgtgtttctgtaagtatgccactgggcctgaccaagtggagcccatgttccgttacctgaagaatacgtatgcggggctacaactgattgtggtggtcttacctggacggactccagtgtatgcggaggtgaagcgtgtgggagacatcctgtttggtctggccacccagtgtgtacagtccaagaacgtgaacaagacctcgccccagacgctgtctaacctgtgtctgaagatcaacgtcaagctgggcggcatcaacaacatcctgctacccagctccagacccctggtgttccgtgagccggtcatctttctgggagctgatgtgacccaccccccggctggagataccagcaaaccctccatagccgccgtggtggggagtatggacgcccatcccagccgttactcagcgacggtgagggtacaggagcaccgtaaggaggtgatagaagagttctgctccatggtcagggaactcctgatctccttctacaagtccacccagttcaaaccgacccgcatcatcatctacagggacggggtcagcgagggacagttccaaaaggtgcttgcccatgaactgagagcggtgagggaggcctgtatgaagctagagattggttaccagccgggaatcaccttcattgccgtccagaagaggcaccacaccaggctcttctgtgccgaccgcaaggaccagataggacgtagcgggaacatcccagcgggaaccattgtggatgtcggaatcacccaccccacacagtttgacttttacctatgcagccatgccggtatacagggcaccagcagaccctcccattaccacgtgttgtgggacgacaattgtttcaaggcggacgagctccagcagttgacataccagctgtgtcacacgtacgtacgctgtacgcgtagcgtgtccatccctgctcctgcgtactacgctcacctggtggcatttagagcgaggtatcaccttgtggagaaagagcatgacagcggagaagggagccgtcactcagatgagatggagaggacaccctcggcaatggctcgagccatcaccgtccaccccgacaccatcaaagttatgtacttcgcttagaccacgaaacaattacctgatcttaggaaatgatttaactcaccagatattggcaacctgccaaaaaccagctcacccaaactttacaaagtgctcccacggaacagtctagtcatccaccacagcgtcgacgattcgtgtttattcatgtgtacgacgatgtcttatcgcacatttctacttttatttttgttaataaactgtccctatcaatgcatgagtgagcaattgttaaatataaatgtatttgttttttttgaaaaaatgatatgaataatattagagtgtaattactagagaacactattaatttggaacagtgtatttttctagaactgtgaagttttgtccattttgagttggttttcttacttgtagcaaatttttgaactggtggtgattatttgaggccatcatactatttttcaaaatgttttccattgacttatcggggtcaagtgctgttttttggagatggtttataggggtttggtgtctgatgcatgcatgttatggtctctgaacacctgtcagtgttgacacttgatatttaaagggtgttgtattgtagtcttgaacaacatggtcttttttttaaaatgatcattcgaacaataaggtgtatctttttgtattttgtaaagaattcattaatgcatgatttttcgcaataagtgtgatgttacattgggtgttgggaatgtttcagtccgagttttgcatctggggaaattacaatgcatattcaagaactgtgaaatattgacaacaattagttcatctttcaaactgaatctcataatttcaaggtcaaagtaccaaaatttatcaatattttgatcccattggagtcttcataatagagttagagcagctgttcaatattaagattatactttttatacaccatatttgatcctctatgtaacacattttaacaccggactgagtgtataaagatgttatatatattagaattgttcatatcatgtcattttgtgtgatgtacactgttttaccaagcagaagccgggaatctgttattatgtatttacactgcatcatttcaagataagttcatgttagaatggcagtagaatttttgtctattttaatcttacactcagtatatagtcttgttattcgctgtagaatcattcaatttgtgggctgtaattttcatggattgcttgttccaagaatgtagtcaaacattaattttatgaaattctttaaaattaatttggttgttcctatccacagaatccatgaattctggattaaggtttccacaacattcatggatttgtggattttggaacccacactattgataaatttgtaaataaatgtatccagaagtaaatgaactttgacccacaaaagtaatgagaccacagtactagcattggatagtcacagactagataaattgtaccctgtatcttaattaaatgattccttgtaattcttcctttgattagccccagaatcaatgtaaataatactaaagtatgttcaattgtgggtgttattgtcaaacatttgatgtcagtactccatcatagcaggacgtgacaaggttaagtcaaacagatcatgacccagtgtttacacctgtacaggtaatggaatagtgtgaaagtaccttccacatctggccagtagttgagagaaggtcaaggtcaggctatactggagtcaaggtcacaaaccaaatgatggcgttttctttgtatgtgcatatataaagcaatggaagaaaggctgtggacaacttttactttgtactgtattattctgtggtgtctctgtagtcagttttacttttagttatttacatcatgtgcagtgaactttgaactcttgttgttataaacaatatattttgttatgataaaaaatttcaaagcaaaacaaaaaaaatacatttctgaccttgtgtaatgcattgataaggaaaagtccttgcagcaattctgaatgatagaattatgtagacatggccctatgaagttaataataggggaggatgatagaattatcccattcactgtgtacacatgtatgctcaacatagtgctcccaaacagctaactatgcaggtccattatacgtatacagagaagctatggacatgtcattacttatctcacaatactgacaaaagctatgggcaggttcattacacataacagaaaaactatgggcaagtccattacacaactatggacaaatccattacacattttagaaaaccttttggaaggtcagatgctaattaccataactatgggcaggtcctcttcacatagcagaaaccattggcaggtccattacccaaaaaaatgtaggggcaggcccattacaccacacaggaaaaattatgggcatgtcatcacagaaaaaatagctatgagcagacacactgcacatcatggagaaactatgagcaggtccattacacatcatggagaaactatgagcaaagccatatgaaaatggattttaaacatggctcacagtgactagaaattgatttattacatcatttcacaacaaactttatcttaaggttcataaagtgtatgggcagctaattgttaataaataagtactttagtagggaaattctcatgttattcatctgatgaaaattgcacaacagcagtttttgtgaatgctgttaagaattggaagtattgcaacttactgttaacacaacagatgtaaaattttgatggcacaatattatgaaatttattaaaacctgatctttctgtaaaactatgtacagtgcttctcagttaatgtttctgttgtgtaaggatgtcatattattattcgacaaatgagataatcatgttataattttggatcatctgactttgagatcacagtggtttatagaatgaatatcatttttagaaatttacaaatgcatgaactttattcatatcctatatctatattgaatatgttgtcctttatctgttaacttctttgtttttatctgttataattgtagatttacagcttaaatttaacaaaataaattgtctttgata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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