2024-04-26 00:21:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011419582 5965 bp mRNA linear INV 18-MAY-2020 DEFINITION PREDICTED: Crassostrea gigas protein argonaute-2 (LOC105321320), transcript variant X1, mRNA. ACCESSION XM_011419582 VERSION XM_011419582.3 DBLINK BioProject: PRJNA629593 KEYWORDS RefSeq. SOURCE Crassostrea gigas (Pacific oyster) ORGANISM Crassostrea gigas Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047559.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 18, 2020 this sequence version replaced XM_011419582.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Crassostrea gigas Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5965 /organism="Crassostrea gigas" /mol_type="mRNA" /db_xref="taxon:29159" /linkage_group="1" gene 1..5965 /gene="LOC105321320" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 202 samples with support for all annotated introns" /db_xref="GeneID:105321320" CDS 135..2897 /gene="LOC105321320" /codon_start=1 /product="protein argonaute-2 isoform X1" /protein_id="XP_011417884.1" /db_xref="GeneID:105321320" /translation="
MFPIAPGIAGLVTQQLNGASHGGCTDLQPPNGILSADIRSTFGPFTTVPPPELNYEAPPHPADQPPPTPPPPSNGNAGEFICPLRPDHGREGKPIALRANHFHVNIPKGFIHHYNVAITPDKCPRRVNREIVETMVNAYTPRIFSGQKPVFDGREKLYSREPLPFGKDKVELEVTLPGEGRDRVFKVAIKWLSQISLYALEEALEGRARRIPECAVEALDVIMRHLPSMMYTPVGRSFFSPPEDYDYPLGGGREVWFGFHQSVRPSHWKMMLNIDVSATAFYKAQPVIDFMCEILELKDANEQRRPLTDSQRVKFTKEIRNLKVEITHCGTMRRKYRVCNVTRRPAQTQSFPLQLDSGQTVDCTVARYFLERYKMKLQHPHLPCLQVGQEHKHTYLPLEVCNVVGGQRCIKKLTDLQTATMIRATAKNAPDREKEINNLVKKASYNNDPHLRTFGITVNPQMMDLHGRVLSHPKLQYGGTNSEFQTKAQALPNQGVWDMRGKQFYFGIEIRVWAIACFAPQRSVREDALRNFTQQLQKISTDAGMPILGQPCFCKYATGPDQVEPMFRYLKNTYAGLQLIVVVLPGRTPVYAEVKRVGDILFGLATQCVQSKNVNKTSPQTLSNLCLKINVKLGGINNILLPSSRPLVFREPVIFLGADVTHPPAGDTSKPSIAAVVGSMDAHPSRYSATVRVQEHRKEVIEEFCSMVRELLISFYKSTQFKPTRIIIYRDGVSEGQFQKVLAHELRAVREACMKLEIGYQPGITFIAVQKRHHTRLFCADRKDQIGRSGNIPAGTIVDVGITHPTQFDFYLCSHAGIQGTSRPSHYHVLWDDNCFKADELQQLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSRHSDEMERTPSAMARAITVHPDTIKVMYFA"
misc_feature 411..803 /gene="LOC105321320" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 831..983 /gene="LOC105321320" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 984..1346 /gene="LOC105321320" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1140..1142,1185..1187,1227..1229,1239..1241, 1293..1295,1314..1316,1320..1322) /gene="LOC105321320" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1479..2771 /gene="LOC105321320" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1905..1907,1917..1919,1953..1964,1971..1973, 1995..1997,2004..2006,2016..2018,2028..2030) /gene="LOC105321320" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2109..2111,2115..2117,2325..2327,2739..2741) /gene="LOC105321320" /note="active site" /db_xref="CDD:240015" ORIGIN
taaggtcagaattttttggggtgattagtgtaacgtcaatcgtgcgccatattttcttttgacaaaagatgaaaatgacagaagtttgtttacctctcctgatttaccattttccctcgtcataagatgtcataatgtttcctattgcaccaggtatagccggcttagtcacccagcaactgaatggggcaagtcatggtgggtgtactgacctgcagccacctaacggaatcctatcggcagacatacggtccacctttggtccttttaccacagtccccccaccagaactgaattatgaggctccaccccacccagctgatcagccaccccccacccctccacctccatctaatgggaatgccggggagtttatctgccccctcaggcctgaccatggacgggagggaaaacccattgctctacgggccaaccattttcatgtcaacatccctaaagggttcatccaccactacaacgtcgccattacacctgacaaatgtccccgacgagtcaacagagagatcgtggagaccatggttaatgcctacacaccccggatcttctccggacagaagcctgtgtttgatggcagagagaaactgtacagtcgagaaccacttccattcggcaaagataaagtggagttagaggtcaccctgccaggtgaaggtcgtgaccgggtgttcaaggtcgccattaagtggctgtcccagatcagtctatacgccctggaggaggcgttagaggggcgtgcccggaggattccagagtgtgcggtggaggcgctggacgtcatcatgaggcacctccccagcatgatgtacacccctgtgggtcgttcattcttctctcccccggaggactatgactaccccctgggagggggcagggaggtgtggttcggcttccatcagagcgtccgtccctcccactggaaaatgatgctcaacattgatgtatcggccacagccttctataaagctcaaccggttatcgacttcatgtgtgaaatcttggagctgaaggacgccaacgaacagcgacgcccactgaccgattcccagcgggtcaagttcaccaaggaaatcagaaacctgaaggtagaaatcacccactgtggaaccatgaggaggaaatatagagtttgtaacgtcactcgcagacccgcacaaactcagtcatttccgctacagctggactcgggtcagacagtggactgtacggtcgctcggtacttcctggagcgctacaaaatgaagctacaacaccctcacctgccgtgtttacaagttggacaggaacataagcacacatatcttccattagaggtttgtaatgtcgttggaggccagagatgtatcaagaagctgacagacctacagacggccaccatgatcagggcgacagccaagaacgcccccgacagagagaaggaaatcaacaatctggtcaagaaggccagttataacaatgacccccacctgaggacgtttggaatcacagtaaacccccagatgatggatctacacggccgggtcctctctcaccccaaactacagtacgggggaacgaattcggaatttcagacgaaagcccaggccctgccgaaccagggcgtgtgggacatgcgagggaagcagttctattttgggatcgagatccgtgtgtgggccatagcatgcttcgccccccagaggagcgtgagggaggatgcattgaggaactttacccagcagttacagaagatttctacggacgcaggcatgcccattcttggtcagccgtgtttctgtaagtatgccactgggcctgaccaagtggagcccatgttccgttacctgaagaatacgtatgcggggctacaactgattgtggtggtcttacctggacggactccagtgtatgcggaggtgaagcgtgtgggagacatcctgtttggtctggccacccagtgtgtacagtccaagaacgtgaacaagacctcgccccagacgctgtctaacctgtgtctgaagatcaacgtcaagctgggcggcatcaacaacatcctgctacccagctccagacccctggtgttccgtgagccggtcatctttctgggagctgatgtgacccaccccccggctggagataccagcaaaccctccatagccgccgtggtggggagtatggacgcccatcccagccgttactcagcgacggtgagggtacaggagcaccgtaaggaggtgatagaagagttctgctccatggtcagggaactcctgatctccttctacaagtccacccagttcaaaccgacccgcatcatcatctacagggacggggtcagcgagggacagttccaaaaggtgcttgcccatgaactgagagcggtgagggaggcctgtatgaagctagagattggttaccagccgggaatcaccttcattgccgtccagaagaggcaccacaccaggctcttctgtgccgaccgcaaggaccagataggacgtagcgggaacatcccagcgggaaccattgtggatgtcggaatcacccaccccacacagtttgacttttacctatgcagccatgccggtatacagggcaccagcagaccctcccattaccacgtgttgtgggacgacaattgtttcaaggcggacgagctccagcagttgacataccagctgtgtcacacgtacgtacgctgtacgcgtagcgtgtccatccctgctcctgcgtactacgctcacctggtggcatttagagcgaggtatcaccttgtggagaaagagcatgacagcggagaagggagccgtcactcagatgagatggagaggacaccctcggcaatggctcgagccatcaccgtccaccccgacaccatcaaagttatgtacttcgcttagaccacgaaacaattacctgatcttaggaaatgatttaactcaccagatattggcaacctgccaaaaaccagctcacccaaactttacaaagtgctcccacggaacagtctagtcatccaccacagcgtcgacgattcgtgtttattcatgtgtacgacgatgtcttatcgcacatttctacttttatttttgttaataaactgtccctatcaatgcatgagtgagcaattgttaaatataaatgtatttgttttttttgaaaaaatgatatgaataatattagagtgtaattactagagaacactattaatttggaacagtgtatttttctagaactgtgaagttttgtccattttgagttggttttcttacttgtagcaaatttttgaactggtggtgattatttgaggccatcatactatttttcaaaatgttttccattgacttatcggggtcaagtgctgttttttggagatggtttataggggtttggtgtctgatgcatgcatgttatggtctctgaacacctgtcagtgttgacacttgatatttaaagggtgttgtattgtagtcttgaacaacatggtcttttttttaaaatgatcattcgaacaataaggtgtatctttttgtattttgtaaagaattcattaatgcatgatttttcgcaataagtgtgatgttacattgggtgttgggaatgtttcagtccgagttttgcatctggggaaattacaatgcatattcaagaactgtgaaatattgacaacaattagttcatctttcaaactgaatctcataatttcaaggtcaaagtaccaaaatttatcaatattttgatcccattggagtcttcataatagagttagagcagctgttcaatattaagattatactttttatacaccatatttgatcctctatgtaacacattttaacaccggactgagtgtataaagatgttatatatattagaattgttcatatcatgtcattttgtgtgatgtacactgttttaccaagcagaagccgggaatctgttattatgtatttacactgcatcatttcaagataagttcatgttagaatggcagtagaatttttgtctattttaatcttacactcagtatatagtcttgttattcgctgtagaatcattcaatttgtgggctgtaattttcatggattgcttgttccaagaatgtagtcaaacattaattttatgaaattctttaaaattaatttggttgttcctatccacagaatccatgaattctggattaaggtttccacaacattcatggatttgtggattttggaacccacactattgataaatttgtaaataaatgtatccagaagtaaatgaactttgacccacaaaagtaatgagaccacagtactagcattggatagtcacagactagataaattgtaccctgtatcttaattaaatgattccttgtaattcttcctttgattagccccagaatcaatgtaaataatactaaagtatgttcaattgtgggtgttattgtcaaacatttgatgtcagtactccatcatagcaggacgtgacaaggttaagtcaaacagatcatgacccagtgtttacacctgtacaggtaatggaatagtgtgaaagtaccttccacatctggccagtagttgagagaaggtcaaggtcaggctatactggagtcaaggtcacaaaccaaatgatggcgttttctttgtatgtgcatatataaagcaatggaagaaaggctgtggacaacttttactttgtactgtattattctgtggtgtctctgtagtcagttttacttttagttatttacatcatgtgcagtgaactttgaactcttgttgttataaacaatatattttgttatgataaaaaatttcaaagcaaaacaaaaaaaatacatttctgaccttgtgtaatgcattgataaggaaaagtccttgcagcaattctgaatgatagaattatgtagacatggccctatgaagttaataataggggaggatgatagaattatcccattcactgtgtacacatgtatgctcaacatagtgctcccaaacagctaactatgcaggtccattatacgtatacagagaagctatggacatgtcattacttatctcacaatactgacaaaagctatgggcaggttcattacacataacagaaaaactatgggcaagtccattacacaactatggacaaatccattacacattttagaaaaccttttggaaggtcagatgctaattaccataactatgggcaggtcctcttcacatagcagaaaccattggcaggtccattacccaaaaaaatgtaggggcaggcccattacaccacacaggaaaaattatgggcatgtcatcacagaaaaaatagctatgagcagacacactgcacatcatggagaaactatgagcaggtccattacacatcatggagaaactatgagcaaagccatatgaaaatggattttaaacatggctcacagtgactagaaattgatttattacatcatttcacaacaaactttatcttaaggttcataaagtgtatgggcagctaattgttaataaataagtactttagtagggaaattctcatgttattcatctgatgaaaattgcacaacagcagtttttgtgaatgctgttaagaattggaagtattgcaacttactgttaacacaacagatgtaaaattttgatggcacaatattatgaaatttattaaaacctgatctttctgtaaaactatgtacagtgcttctcagttaatgtttctgttgtgtaaggatgtcatattattattcgacaaatgagataatcatgttataattttggatcatctgactttgagatcacagtggtttatagaatgaatatcatttttagaaatttacaaatgcatgaactttattcatatcctatatctatattgaatatgttgtcctttatctgttaacttctttgtttttatctgttataattgtagatttacagcttaaatttaacaaaataaattgtctttgata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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