2024-04-26 09:03:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_010901063 5447 bp mRNA linear VRT 11-MAY-2020 DEFINITION PREDICTED: Esox lucius argonaute RISC component 1 (ago1), transcript variant X9, mRNA. ACCESSION XM_010901063 VERSION XM_010901063.4 DBLINK BioProject: PRJNA629749 KEYWORDS RefSeq. SOURCE Esox lucius (northern pike) ORGANISM Esox lucius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047588.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 11, 2020 this sequence version replaced XM_010901063.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Esox lucius Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5447 /organism="Esox lucius" /mol_type="mRNA" /isolate="fEsoLuc1" /db_xref="taxon:8010" /chromosome="20" /tissue_type="liver, spleen" /dev_stage="adult" /country="Czech Republic: Jihlava River, Danube basin" /lat_lon="49.218 N 16.717 E" /collection_date="29-Nov-2018" /collected_by="Martin Reichard" gene 1..5447 /gene="ago1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:105028369" CDS 441..3017 /gene="ago1" /codon_start=1 /product="protein argonaute-1 isoform X9" /protein_id="XP_010899365.1" /db_xref="GeneID:105028369" /translation="
MEPGPSGAVPMGPFPPPLQQVFQAPRRPGMGTVGKPIKLLANYFEVEIPKMDVFHYEVDIKPDKCPRRVNREVVEYMVQHFKPQLFGDRKPVYDGKKNIYTVLALPIGSEKVDFEVTIPGEGKDRIFKVSIRFLATVSWRLLQETLVSGRLQVPLDSVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKTLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNANFNLDPYIQEFGIKVKDDMAEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKSERIGKSGNIPAGTTVDTSITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 447..3011 /gene="ago1" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1611..2888 /gene="ago1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2022..2024,2034..2036,2070..2081,2088..2090, 2112..2114,2121..2123,2133..2135,2145..2147) /gene="ago1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2226..2228,2232..2234,2442..2444,2856..2858) /gene="ago1" /note="active site" /db_xref="CDD:240015" ORIGIN
gaatgcgacatcaatcaaaatggaagaaggggttccagaattcgtgtagaggggttggcccttttttgttcggctggagaatcctgcttgaacggggagcaggaacataacagaccgcccagaaagcatcgcgccacggacgatcctacatatcaggccgggcaacgggcgttcaacccaaaggagagtagacagagacacggtacggcactagagccgttcagacgtcggttctggactcataagatagctaggtagctcttgttgttacaactctgggggtactggaaggggtagggggcggaggtctagcgagtacggagaagcctacacgccgagaggagggggctggaagtctgcaacgcttccagcctgaaggggccggcgctgtggccatagaaccctggactgtctagagcccgcgcggctaagtggatgggatggagccgggaccgtctggcgctgtgcccatggggcccttccccccacccctgcagcaggtgttccaggcgccccgccggccaggcatgggcacggtgggcaaaccaatcaagctgctggccaactactttgaggtggagatccccaagatggatgtcttccactacgaggtggacatcaagcccgacaagtgcccccgacgggttaacagggaagtggtggaatacatggtgcaacacttcaagccccagctctttggcgacaggaaaccagtgtatgatggcaagaagaacatctatacggtgctagcacttcctatcggaagtgagaaggtggactttgaggtgaccattcccggggaggggaaggatcgtatcttcaaggtgtctatccgatttctggccacggtgtcatggcgtctgctccaagaaacgctggtcagcgggcgcctgcaggtacccctggactcggtccaggcgctggatgtggccatgcgccacctggcctccatgaggtacactcctgtaggacgatcgtttttctcccctccagaaggctactaccaccctctgggaggggggagggaggtgtggtttgggttccaccagtcggtacgacccgccatgtggaagatgatgctcaacattgacgtgtctgccacggccttttacaaagcccagccagtgatcgagttcatgtgtgaggtcctggacatccgcaacatagacgagcagcccaaaaccctgaccgactcgcagagggtccgcttcaccaaggagatcaaaggtctgaaggtggaggtgactcactgcggtcagatgaagaggaagtaccgggtctgcaacgtgacccggcgtcccgccagccaccagacgtttcccttgcagcttgagagtggccagactgtagaatgtacagtagcccagtacttcaagcagaagtacaatctccagctgaaatacccccacctcccctgccttcaggtgggccaggagcagaagcacacctacctacccctggaggtgtgtaacatcgtagcaggacaacggtgcatcaagaagctgaccgataatcagacgtccactatgatcaaagccacggctcgttctgcaccggacagacaggaggagatcagcagactgatgaagaatgccaactttaacctggacccgtacattcaggagtttgggatcaaggtgaaggatgacatggcggaggtgaccgggagagtgctgcccgcccccatccttcagtacggaggacggaaccgggccatcgcaactcccaaccagggggtgtgggacatgaggggcaaacaattttacaacggcattgagatcaaagtgtgggccatcgcttgcttcgccccccagaagcagtgtcgggaggaggtgctcaagaacttcaccgaccagctgcgtaagatctccaaggatgctgggatgcccatccagggccagccatgtttctgtaaatacgcccagggtgccgacagtgtggagcccatgttcaggcacctgaagaacacctactccggactccagctcatcatcgtcattctgcctggaaagaccccagtctatgcggaggtgaagagggttggagacaccctccttggaatggccactcagtgtgtccaggtgaagaacgttgtgaagacgtccccccaaaccctgtccaacctctgcctgaagatcaacgtcaagctggggggaatcaacaacattctggtgcctcaccaacggtcagcagtgttccagcagcctgtcatcttccttggggctgatgttacacaccccccggctggagacgggaagaagccctccatcactgctgtggtgggcagtatggacgcccaccccagcaggtactgtgccacagtgagggttcagaggcccaggcaggagatcatcgaggacctgtcttacatggtgcgagagctgctgatccagttctacaagtccacccgctttaagcccaccaggatcatcttctacagggacggagtgccagagggtcagctgccacagatcctccactatgagcttttggctatcagggatgcatgcatcaagctggagaaggactaccagcctggcatcacctacattgtggtccagaagcgtcaccatacccgcctcttctgtgccgacaagtcagagagaattgggaagagtgggaacattcctgcagggaccacggtggacaccagcattactcacccatttgagtttgacttctacctgtgcagtcacgcagggatacaggggacaagtcgtccttcgcattactacgttctttgggacgacaatcgtttcaccgctgacgagctgcaaatcctcacctaccagctgtgccacacctacgtgcgctgtacccgctccgtctcaatccccgcgccagcttactacgcccgcctcgtggccttccgtgctcgctaccatctggtggacaaggagcacgacagtggggagggcagccatgtctctggccagagcaacggtcgcgacccccaggctctggccaaggccgtgcagattcaccacgacaccctaaggaccatgtacttcgcctgagcaccacaccgccaccatgactgcccttaacacccagcgggcggccctctggtgaggggcttaggagtccacttgatgcctcactcctcagcttctcacaccttcggccaccgcagcaccagaaccatacttcgctcacctgaacgacccaggcagactgcagcgtcctgcactcagttattgttaatattattatttttgtttactttgccatgacagtgctctttttatgttgacttttaaaacaaatgggtattattgcagtgtatgcaaccttccacactgctatggaagtatgcaatatggaaggaaggaaaacgggctttgagacgccctgggacttcagactgccacaatgctgcctcttactggtccgcaccacggacaacagtgttctgtttccgagcctctggtacaactgggggtcacggggggtcccggagggcaacagaaagaacacacacttcttatctttttaaccttttatcatgacctctgttcttatgttgccgttgtgtttttttgttttatttttgccttaaggcacacggcgtgaggtatggtgcattagcacttagcagttagcatgtagacaacaccgccccaccctgcacctaatatgaagtttatctgtacgcgtgaggctagccctcggctcttggtagtagcagaatgaggagggcaggtacaacttatgctacacgtgtgcaggacacgtagtcctcccacatgatacctgtgcaggttggggaggtccctcttgcctagagaattatctaatagagagaggcaaatgtagacgttagatggaccattgcatcgagtgtattaaatatacttgcacctcgtgcacataagccagcattctgaatgagcaaatgggatgccaaccaacagaacaggggcacttacataaacacaatggggggggggttcattcccccacgccacacacacacacacacttagtaacataattcatgttcttacacataaaacctctctaagcttgctgaacctttcgagtaacagtagcaatacaaggtagcagcagaccgacgtgggccagagagcgccatggtgttcgtctctcaccttgggcactcagccttggctgtaccgcctccagcacattctgtcttcacagtccgccgtgttgtcagtggagacgacgtccacacttaacgcaccacgatgtggcgtacacctacacacacacacacactgatactgtcagaacacttagccccgctcccttattttgtacatagctcctcttcctacctaaaggcattgaccacggcaactgggacacaagcgcgctcatgcctcctcaaccgctctgtcgtgctcgtacttaagagagtaccgagccgcctccacacatgtccttgccccattgaaagcccccacataaacacttgcgccctccttctgacacccccatcctctttcctaggcatacccttcatcgttggccactcccctcagcctagtggacaatccccattggtgcgctgtgtgcatggacaacacagatacggggttttctacgaaggttatgggggtttctcccttaatatgtcctgccttcacttctggtcactttctggctttatgatacgcatgcaacattatttttttattattgtgactggatattctgagccaccttatttcagttttcctagtgataggagcttattacgctcacttcttctgcctgtcagtcatagcttcaattgtgtaaatggcgtttctgaaaggctgctttttgtgttctgtattgtagtgagtagtgtcagagtgtatcctcaagggggtgctacctttcccttgttgccctcaaacgcctcaaatcatgtctgttgggttgtagagctcctttttgtcggaagcgatcaacgatagagattcaatgatatgccagattttttttgacacatgttaatgaacttgcgtaatcaaaatgcctttgtacaccattttactgaccccatgtgtccaaggtgatttgtatataacctataatgtattttggctcatcaatgtagcagggcctttgcagttggggttagtctccctcacccaccccctctgttaaaatgtcaggctcgggaagcccagttccactgatccagatacagttcgtaacttaatttactgaagccacaaagcaccttgcaaccggggagagcaacaatatggaattaccctggaaaaagcatcatgatgagaaatccgctccacccagcctcactgactaagcaatataaaagccactgatcaggaacagtccttgtcatagcacttcccaatagattgatgaagggacatggaataatgttattttggctctgtatgatgtaagagtatggggctctgttggggagggctattttttaaagaaaataaatttgttttttatta
//
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@meso_cacase at
DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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