2024-04-20 09:33:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_010901057 5485 bp mRNA linear VRT 11-MAY-2020 DEFINITION PREDICTED: Esox lucius argonaute RISC component 1 (ago1), transcript variant X4, mRNA. ACCESSION XM_010901057 VERSION XM_010901057.5 DBLINK BioProject: PRJNA629749 KEYWORDS RefSeq. SOURCE Esox lucius (northern pike) ORGANISM Esox lucius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047588.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 11, 2020 this sequence version replaced XM_010901057.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Esox lucius Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5485 /organism="Esox lucius" /mol_type="mRNA" /isolate="fEsoLuc1" /db_xref="taxon:8010" /chromosome="20" /tissue_type="liver, spleen" /dev_stage="adult" /country="Czech Republic: Jihlava River, Danube basin" /lat_lon="49.218 N 16.717 E" /collection_date="29-Nov-2018" /collected_by="Martin Reichard" gene 1..5485 /gene="ago1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns" /db_xref="GeneID:105028369" CDS 440..3055 /gene="ago1" /codon_start=1 /product="protein argonaute-1 isoform X4" /protein_id="XP_010899359.1" /db_xref="GeneID:105028369" /translation="
MEPGPSGAVPMGPFPPPLQQVFQAPRRPGMGTVGKPIKLLANYFEVEIPKMDVFHYEVDIKPDKCPRRVNREVVEYMVQHFKPQLFGDRKPVYDGKKNIYTVLALPIGSEKVDFEVTIPGEGKDRIFKVSIRFLATVSWRLLQETLVSGRLQVPLDSVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKTLTDSQRVRFTKEIKGGPLNSDRWALPGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNANFNLDPYIQEFGIKVKDDMAEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKSERIGKSGNIPAGTTVDTSITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSSGEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 446..3049 /gene="ago1" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1646..2923 /gene="ago1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2057..2059,2069..2071,2105..2116,2123..2125, 2147..2149,2156..2158,2168..2170,2180..2182) /gene="ago1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2261..2263,2267..2269,2477..2479,2891..2893) /gene="ago1" /note="active site" /db_xref="CDD:240015" ORIGIN
aatgcgacatcaatcaaaatggaagaaggggttccagaattcgtgtagaggggttggcccttttttgttcggctggagaatcctgcttgaacggggagcaggaacataacagaccgcccagaaagcatcgcgccacggacgatcctacatatcaggccgggcaacgggcgttcaacccaaaggagagtagacagagacacggtacggcactagagccgttcagacgtcggttctggactcataagatagctaggtagctcttgttgttacaactctgggggtactggaaggggtagggggcggaggtctagcgagtacggagaagcctacacgccgagaggagggggctggaagtctgcaacgcttccagcctgaaggggccggcgctgtggccatagaaccctggactgtctagagcccgcgcggctaagtggatgggatggagccgggaccgtctggcgctgtgcccatggggcccttccccccacccctgcagcaggtgttccaggcgccccgccggccaggcatgggcacggtgggcaaaccaatcaagctgctggccaactactttgaggtggagatccccaagatggatgtcttccactacgaggtggacatcaagcccgacaagtgcccccgacgggttaacagggaagtggtggaatacatggtgcaacacttcaagccccagctctttggcgacaggaaaccagtgtatgatggcaagaagaacatctatacggtgctagcacttcctatcggaagtgagaaggtggactttgaggtgaccattcccggggaggggaaggatcgtatcttcaaggtgtctatccgatttctggccacggtgtcatggcgtctgctccaagaaacgctggtcagcgggcgcctgcaggtacccctggactcggtccaggcgctggatgtggccatgcgccacctggcctccatgaggtacactcctgtaggacgatcgtttttctcccctccagaaggctactaccaccctctgggaggggggagggaggtgtggtttgggttccaccagtcggtacgacccgccatgtggaagatgatgctcaacattgacgtgtctgccacggccttttacaaagcccagccagtgatcgagttcatgtgtgaggtcctggacatccgcaacatagacgagcagcccaaaaccctgaccgactcgcagagggtccgcttcaccaaggagatcaaaggtgggccgttgaacagtgatcggtgggcgttgccaggtctgaaggtggaggtgactcactgcggtcagatgaagaggaagtaccgggtctgcaacgtgacccggcgtcccgccagccaccagacgtttcccttgcagcttgagagtggccagactgtagaatgtacagtagcccagtacttcaagcagaagtacaatctccagctgaaatacccccacctcccctgccttcaggtgggccaggagcagaagcacacctacctacccctggaggtgtgtaacatcgtagcaggacaacggtgcatcaagaagctgaccgataatcagacgtccactatgatcaaagccacggctcgttctgcaccggacagacaggaggagatcagcagactgatgaagaatgccaactttaacctggacccgtacattcaggagtttgggatcaaggtgaaggatgacatggcggaggtgaccgggagagtgctgcccgcccccatccttcagtacggaggacggaaccgggccatcgcaactcccaaccagggggtgtgggacatgaggggcaaacaattttacaacggcattgagatcaaagtgtgggccatcgcttgcttcgccccccagaagcagtgtcgggaggaggtgctcaagaacttcaccgaccagctgcgtaagatctccaaggatgctgggatgcccatccagggccagccatgtttctgtaaatacgcccagggtgccgacagtgtggagcccatgttcaggcacctgaagaacacctactccggactccagctcatcatcgtcattctgcctggaaagaccccagtctatgcggaggtgaagagggttggagacaccctccttggaatggccactcagtgtgtccaggtgaagaacgttgtgaagacgtccccccaaaccctgtccaacctctgcctgaagatcaacgtcaagctggggggaatcaacaacattctggtgcctcaccaacggtcagcagtgttccagcagcctgtcatcttccttggggctgatgttacacaccccccggctggagacgggaagaagccctccatcactgctgtggtgggcagtatggacgcccaccccagcaggtactgtgccacagtgagggttcagaggcccaggcaggagatcatcgaggacctgtcttacatggtgcgagagctgctgatccagttctacaagtccacccgctttaagcccaccaggatcatcttctacagggacggagtgccagagggtcagctgccacagatcctccactatgagcttttggctatcagggatgcatgcatcaagctggagaaggactaccagcctggcatcacctacattgtggtccagaagcgtcaccatacccgcctcttctgtgccgacaagtcagagagaattgggaagagtgggaacattcctgcagggaccacggtggacaccagcattactcacccatttgagtttgacttctacctgtgcagtcacgcagggatacaggggacaagtcgtccttcgcattactacgttctttgggacgacaatcgtttcaccgctgacgagctgcaaatcctcacctaccagctgtgccacacctacgtgcgctgtacccgctccgtctcaatccccgcgccagcttactacgcccgcctcgtggccttccgtgctcgctaccatctggtggacaaggagcacgacagtagtggggagggcagccatgtctctggccagagcaacggtcgcgacccccaggctctggccaaggccgtgcagattcaccacgacaccctaaggaccatgtacttcgcctgagcaccacaccgccaccatgactgcccttaacacccagcgggcggccctctggtgaggggcttaggagtccacttgatgcctcactcctcagcttctcacaccttcggccaccgcagcaccagaaccatacttcgctcacctgaacgacccaggcagactgcagcgtcctgcactcagttattgttaatattattatttttgtttactttgccatgacagtgctctttttatgttgacttttaaaacaaatgggtattattgcagtgtatgcaaccttccacactgctatggaagtatgcaatatggaaggaaggaaaacgggctttgagacgccctgggacttcagactgccacaatgctgcctcttactggtccgcaccacggacaacagtgttctgtttccgagcctctggtacaactgggggtcacggggggtcccggagggcaacagaaagaacacacacttcttatctttttaaccttttatcatgacctctgttcttatgttgccgttgtgtttttttgttttatttttgccttaaggcacacggcgtgaggtatggtgcattagcacttagcagttagcatgtagacaacaccgccccaccctgcacctaatatgaagtttatctgtacgcgtgaggctagccctcggctcttggtagtagcagaatgaggagggcaggtacaacttatgctacacgtgtgcaggacacgtagtcctcccacatgatacctgtgcaggttggggaggtccctcttgcctagagaattatctaatagagagaggcaaatgtagacgttagatggaccattgcatcgagtgtattaaatatacttgcacctcgtgcacataagccagcattctgaatgagcaaatgggatgccaaccaacagaacaggggcacttacataaacacaatggggggggggttcattcccccacgccacacacacacacacacttagtaacataattcatgttcttacacataaaacctctctaagcttgctgaacctttcgagtaacagtagcaatacaaggtagcagcagaccgacgtgggccagagagcgccatggtgttcgtctctcaccttgggcactcagccttggctgtaccgcctccagcacattctgtcttcacagtccgccgtgttgtcagtggagacgacgtccacacttaacgcaccacgatgtggcgtacacctacacacacacacacactgatactgtcagaacacttagccccgctcccttattttgtacatagctcctcttcctacctaaaggcattgaccacggcaactgggacacaagcgcgctcatgcctcctcaaccgctctgtcgtgctcgtacttaagagagtaccgagccgcctccacacatgtccttgccccattgaaagcccccacataaacacttgcgccctccttctgacacccccatcctctttcctaggcatacccttcatcgttggccactcccctcagcctagtggacaatccccattggtgcgctgtgtgcatggacaacacagatacggggttttctacgaaggttatgggggtttctcccttaatatgtcctgccttcacttctggtcactttctggctttatgatacgcatgcaacattatttttttattattgtgactggatattctgagccaccttatttcagttttcctagtgataggagcttattacgctcacttcttctgcctgtcagtcatagcttcaattgtgtaaatggcgtttctgaaaggctgctttttgtgttctgtattgtagtgagtagtgtcagagtgtatcctcaagggggtgctacctttcccttgttgccctcaaacgcctcaaatcatgtctgttgggttgtagagctcctttttgtcggaagcgatcaacgatagagattcaatgatatgccagattttttttgacacatgttaatgaacttgcgtaatcaaaatgcctttgtacaccattttactgaccccatgtgtccaaggtgatttgtatataacctataatgtattttggctcatcaatgtagcagggcctttgcagttggggttagtctccctcacccaccccctctgttaaaatgtcaggctcgggaagcccagttccactgatccagatacagttcgtaacttaatttactgaagccacaaagcaccttgcaaccggggagagcaacaatatggaattaccctggaaaaagcatcatgatgagaaatccgctccacccagcctcactgactaagcaatataaaagccactgatcaggaacagtccttgtcatagcacttcccaatagattgatgaagggacatggaataatgttattttggctctgtatgatgtaagagtatggggctctgttggggagggctattttttaaagaaaataaatttgttttttatta
//
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@meso_cacase at
DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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