2024-03-29 20:33:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009649343 6632 bp mRNA linear VRT 20-AUG-2020 DEFINITION PREDICTED: Egretta garzetta NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X1, mRNA. ACCESSION XM_009649343 VERSION XM_009649343.2 DBLINK BioProject: PRJNA253831 KEYWORDS RefSeq. SOURCE Egretta garzetta (little egret) ORGANISM Egretta garzetta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Egretta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_009258767.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 20, 2020 this sequence version replaced XM_009649343.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Egretta garzetta Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6632 /organism="Egretta garzetta" /mol_type="mRNA" /isolate="BGI_Z169" /db_xref="taxon:188379" /chromosome="Unknown" /sex="male" /country="China" gene 1..6632 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:104135667" CDS 77..3589 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_009647638.1" /db_xref="GeneID:104135667" /translation="
MALFPAFAGAAEPGGPPTGSSEGSRKELDWLSNPSFSTEDALLLHQRTTEVANLIPEKSPLIRTTSRSELSGESDTDESLRQSSKKRKKKKKKHHHYKKTKKKTRGDSSSSESDLDTKRIEDKAPRSGRNHEKEAAANLDKKTSNLTSNRFVWLDDIQDLTAETFRIDKKPDPANWAYKSLYRGDIARYKRRGESCLGIDVKKQCITWDSSASKRKQLQRQPERYFTKNNVKMLNTDGIPVCSKSSTSDPTAFIPVFQMETDDHSDTTEVNPLGIYDPSTTVWLQGKECKSADHEPVNTQQTTQEPGININSTLMTKVEEHNKKVRENPRDINAWMEFVSFQDELMRGPSPYASKGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPAALIKEWQKLIFLHPNNPELWKKYLLFCQSQFTTFSVSKINSVYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWIALKTDDDDDEEIDEDQEIKDKTLPKWHIWLDIEYSREARHWLPWRPDKMKKEAEEDCEDPERQVLFDDLGPSLIQISNPDLQRQLLYSFLQFLGVPCTSKLFPSNLYIAMDENNIFDSVLSDEKPLTSVDFPLCGFNSIGHMDTMLRGRHHIGHYKEGEEFIQNVFHVLFLLFSGKEKSNLSFCWLQYEISKVVQCLQVKNKKKLKAQGKKSKKLAKNLLKEPDNRNHLSLWKLYAYLEWLLGNIDDARKVFDTALCTAGTGGLKSPQLCSLSLLYAQLEVELLESIEGAVMSRAVHILTKLAESGPYVPYNGQVLPVNVLKARKTYEHALQDYLSKTSVSNQDQVSDANQLVNLVGCYALFQYLTVGIDAAVLIYAQTSEKLEAAGPQTCENTGENVGIQNFPTALEAVTLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNLPLWRSYIHIQRKSHCASKARRFFDGVTRSTNALEPWLFAIQAEQMRKKLTENVQRADVGEIHSTIPETGLTNRIVALFEHAVQSESGTHCPLLWRMYLNFLASLGKKEKSKGLFYKALQNCPWAKVLYMDAVEYFPDQLQETIDLMTEKELRVRVPLEELDLLLEV"
misc_feature 566..844 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(566..592,599..604,614..619,623..625,629..673, 680..688,692..700,722..730,740..745,749..754,761..781, 800..811,821..844) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1034..2029 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
ctcgagccgcggcgccatcttcccccgccgctccgcagggcacttcgggcagatagtagtggcggcaagctgagagatggccctgttcccggcatttgccggtgccgctgagcccggggggcccccaaccggcagcagcgagggctccaggaaagaattggactggcttagcaacccaagcttctctacagaagatgcactattactgcatcagcggactacagaagttgcaaatctcatccctgaaaaatcaccactaataaggactacttcaagatcagagttgtcaggggaaagtgatacagatgagagtctgaggcagtcaagtaagaagaggaaaaagaaaaagaaaaagcatcaccattataagaagacaaaaaagaaaaccagaggggactccagtagcagcgaatcagacctggacactaagcgcatcgaggacaaagccccaagaagtggcagaaatcacgaaaaggaagcagcagcaaatctagataagaaaacatcaaatcttaccagcaatcgttttgtttggcttgacgatatccaggatttgacagcagaaaccttcagaatagacaagaaaccagaccctgcaaactgggcctacaaatccctgtatcgaggagacatagcaagatataaaaggagaggagagtcgtgtcttggcatagatgtaaagaaacagtgtataacttgggacagctctgcatcaaaaaggaagcagttacagaggcaacccgagcgctacttcacaaagaacaatgtgaagatgctgaacacagatgggattcctgtttgcagtaagagttctacatctgacccaactgcttttataccggttttccaaatggaaactgatgatcattctgacacaacagaggtaaatcctcttgggatttatgatccgtcaactacagtgtggctgcaaggaaaagagtgcaagagtgcagaccatgaacctgtaaatacgcagcaaacaactcaagagcctgggataaacattaactccactctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcctggatggagtttgtttcttttcaggatgaattaatgagaggacctagcccttatgccagtaagggagagcaggaagtaagaagaaaatcactgaagttaatcttagaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagctttgcacagaattctgggaaccagcagctttgatcaaagaatggcagaagctaattttcttacatcccaataatccagagctgtggaagaaatatctcctgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtgtctatggaaaatgtttgactacattggcagctgtacaggatggcagcatggtatctcatcctctactgcctggcacagaagaagctatgctagctatatttattcagcagtgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctggattgctcttaagactgatgatgatgatgatgaagagatagatgaagatcaagaaataaaggataaaactctccccaagtggcatatttggttggatattgaatattctcgtgaagcaaggcactggttaccttggaggccagacaaaatgaaaaaggaagctgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccagatttctaatccagatcttcagcgtcagctcctgtactcattcttgcaattcctgggagttccatgtacaagtaaactctttccttccaacctctatattgccatggatgaaaataacatctttgacagtgtgctttctgatgaaaagccactgacttctgttgattttccgctttgtggattcaacagtattggtcatatggacacgatgctacgaggaagacatcacataggccactataaagaaggagaggagttcatacagaatgtttttcatgttctattcctgctattttcaggaaaggaaaaatctaacctgtccttttgttggttgcagtatgaaatatctaaggtagtccagtgtctccaagtgaaaaacaagaagaagctgaaagcacaagggaaaaagagtaaaaagttggccaagaatctccttaaagaacccgacaaccgaaaccacctttctctctggaaactgtatgcctacctggaatggctgcttggtaacattgatgatgccaggaaggtatttgacacagctctttgcacggcggggacaggaggattgaagagtccccagctctgcagcctcagtctgctttatgctcagctggaagtggaactgctagaaagtatagaaggagcggttatgtcacgtgctgttcacatattgaccaaattggctgaaagtggaccatatgtgccctataatggacaggtgttacctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactacaagattatttaagtaaaacatcagtttctaatcaggatcaggtcagtgatgcgaatcagctggtgaacttggttggctgttacgcgctcttccagtatttgactgttgggattgatgctgcagtattaatatacgcacagacttcagaaaaacttgaagctgctggtccacagacatgtgaaaatactggagagaatgttggcattcagaattttcccactgctcttgaagctgtcacactgctgcatacaaatttactcagattccacatgaaaattagtgtttatcctttgaatcctctgcgagaggcactaacggaggctctgaaacggtatcctagcaacctgcctctttggaggtcatacatccacatccaaaggaagtctcactgtgctagcaaagcacgaagattttttgatggtgtcacaaggtctactaacgctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcactgagaatgtccagagggcagatgttggtgaaatacattctaccattcctgaaactgggttaacaaatcggattgtagctctgtttgaacacgcagttcagagtgaaagtggtacccattgtccactgctgtggagaatgtatttgaactttctggcttcattaggaaaaaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggtactctatatggatgcagtagagtacttccccgatcaactgcaagagacaattgatctaatgactgaaaaagaattgagagtgcgggtacctctggaagagctggatctgctattggaggtttaaaagatgactgtagatgagtggagaaggtgcaggagttagttccaaaactaacatttagacctgtctcttctcaaacaggaactctgctgggacttgggtactatggactacttttttttttttttttttaaagttgtttttgttttgtttttttaagcttttatataaattgctatcaaaatggagttccagtagctgcaagtactctggaatcaagtactgctttttgcccacaaaaatgcatccgtttctctgaagcattgctggctcccacagaaggataccctcttataaatagcctcctgttgaacgctgcccacatttcttattctattgtttgaaatcacattccctagagttcagcagagatccagtacatgccaactatggtttggtgggcagcacaggaaataaacatctgccagaatggatgctccactgtcctccagttggcagacttcagtgatttccttcagctgggtatgcatgcgcatgtatatataattgccaagtcaaacggccgttagtctgtacatatactgttagtaaaagctaaatctctgcttgagcaggcacctattttggacttgtatttgtatgttttgacagatgaccattttaatatgaatatttatgaaaaatatacctgaatgtttgaaaattcaaaagtaattatttttgatttcttaatttaatagaactgagtgtactaaaaccaaaaatgtatccataatgcatctctaaccagctcactttttaacaagcttttgtaattgatctctcactttttgattcaaatacaggcagtcgtcataagaagtaggggtctggtctgtatttaatccgcaccaaaggaggcagagtagtcaaaacatgattgtttaattagtagtttctactccaggagtctttaggcaagctcctagagaagtaatatggaatatggtaacaatttaaaggtatagttatggtacatacttattttataaggcagaatatgctgaaatgggtgaaagactgtttagcatccctactcctgagatgcaagtgctcagaaactggatcttcatctgtaagggagggtcctgcagctgctgaatacccaaatctgttccagaggtttttcaggagaaaactatcactaacagcactgaaaggatcggggtcatcagcaggtgagggccgattgcacagaaaactctgcctggacaaagccatacaacctatggttcggttttgcctgtagcaccacaatacaaggtataatatgttgtagttcaggctgcacttcatttattcctttctaaaaggaaatactacggggaatatgcagaattttaaatgacattacagcacttcttaagagccttataatattgctatggttgcaggtgatgctggttttgctgtaaaagtaattgatttgtctttgtaaaaaatactcattttatttttaaaatccatgctgctttctgaaatggcggagctcctgaactgggggtaggagttaactctgtgcaccgaacagtaacattgcaaatggtgtgcacatgcgtgtgtttttgctctcctgtcagagcaaaatccatttcctctaaagccgtggaagggaggcggagagggggaagcctgatggtgctcctgtgtgtgtctctcttcagagtcatagaatcacggcacagccccagcagggagggacccccagagatcatctgctccagccttttgtggggcagggagcctaagtgggattatccagcaacctgtccagtctcctcttgaaaacctcccccgagggcagcaatggctcttgttcagtcaccttgctcttccctgcatcccctccccaggccctttcctttgcacagctcctccctttgctcagggcagtcggaggctgctcgcttgctggagctcctggcctaaatctggcctggtaatttggaccccagtagctttttctgcccttagagggaatatactcgctgttctctctctcctggtctttacctttgtcttgatctctgtgactcaagttcaggaagcagggagaaaggggcagaagttaaattctgctgcaaaaggttaagaatttaattttgaagtacgtttctttttcagttcctgttgtggcagccagggtaccagcaggcagctcgtggtttagctcagcacattgcagcttcccttcaggcagctgaaccgacctcgtggtggttggtgcttctaagccagcgttaacagccatgtcccagatgaaaaaagccctgttcgccacacatgtcataaagctcttcagcccctcgagcgatgatgagatcaactgccatgatgaggaagtgctaaaaaatcactggctttttgtgacctttccaaggagacagatctcataaggtttgtaagaatgggtaataaaacttgacttgttgtttttctatctccagctgaaaaacaactctattttggggttcctgtcatccagattaaataaaaagactccattcatctgtagggtttgtttttaacaatgaaccacataatttttacatagaaaaacaacatctcttggccttgctgctaccattgttgttacagccctggcagttaccaaagggattgctctgtgttcaactcccaaatgtctgttatgggccagcatttgctcccacagaaagtttccagagcaaagactgcacgttgcttaactgtggtctgtatatggaactctaacaaatcttaaaaagcatacacacatttggtaattaattaattactcagaccttaacaagtgcttcacagaagtacactacagagtacagtatagacattgctacagcttagcaaagtagaaatgaaacccccttgggggtggaggtgcaggcagtaggtttgtttcacagaagggcaagggttggaggtcatctagtccaaccctcctgctaaagctggttcaccgagagcaggttgcaaaggtcatcatccaggcagcttttgaatatctccagagaaggagatgccacaacctccctggacagcctgtgcc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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