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2024-03-29 20:33:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_009649343            6632 bp    mRNA    linear   VRT 20-AUG-2020
DEFINITION  PREDICTED: Egretta garzetta NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X1, mRNA.
ACCESSION   XM_009649343
VERSION     XM_009649343.2
DBLINK      BioProject: PRJNA253831
KEYWORDS    RefSeq.
SOURCE      Egretta garzetta (little egret)
  ORGANISM  Egretta garzetta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Egretta.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_009258767.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 20, 2020 this sequence version replaced XM_009649343.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Egretta garzetta Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6632
                     /organism="Egretta garzetta"
                     /mol_type="mRNA"
                     /isolate="BGI_Z169"
                     /db_xref="taxon:188379"
                     /chromosome="Unknown"
                     /sex="male"
                     /country="China"
     gene            1..6632
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:104135667"
     CDS             77..3589
                     /gene="NRDE2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X1"
                     /protein_id="XP_009647638.1"
                     /db_xref="GeneID:104135667"
                     /translation="
MALFPAFAGAAEPGGPPTGSSEGSRKELDWLSNPSFSTEDALLLHQRTTEVANLIPEKSPLIRTTSRSELSGESDTDESLRQSSKKRKKKKKKHHHYKKTKKKTRGDSSSSESDLDTKRIEDKAPRSGRNHEKEAAANLDKKTSNLTSNRFVWLDDIQDLTAETFRIDKKPDPANWAYKSLYRGDIARYKRRGESCLGIDVKKQCITWDSSASKRKQLQRQPERYFTKNNVKMLNTDGIPVCSKSSTSDPTAFIPVFQMETDDHSDTTEVNPLGIYDPSTTVWLQGKECKSADHEPVNTQQTTQEPGININSTLMTKVEEHNKKVRENPRDINAWMEFVSFQDELMRGPSPYASKGEQEVRRKSLKLILEKKLAILERAIESNPSNVDLKLARLKLCTEFWEPAALIKEWQKLIFLHPNNPELWKKYLLFCQSQFTTFSVSKINSVYGKCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWIALKTDDDDDEEIDEDQEIKDKTLPKWHIWLDIEYSREARHWLPWRPDKMKKEAEEDCEDPERQVLFDDLGPSLIQISNPDLQRQLLYSFLQFLGVPCTSKLFPSNLYIAMDENNIFDSVLSDEKPLTSVDFPLCGFNSIGHMDTMLRGRHHIGHYKEGEEFIQNVFHVLFLLFSGKEKSNLSFCWLQYEISKVVQCLQVKNKKKLKAQGKKSKKLAKNLLKEPDNRNHLSLWKLYAYLEWLLGNIDDARKVFDTALCTAGTGGLKSPQLCSLSLLYAQLEVELLESIEGAVMSRAVHILTKLAESGPYVPYNGQVLPVNVLKARKTYEHALQDYLSKTSVSNQDQVSDANQLVNLVGCYALFQYLTVGIDAAVLIYAQTSEKLEAAGPQTCENTGENVGIQNFPTALEAVTLLHTNLLRFHMKISVYPLNPLREALTEALKRYPSNLPLWRSYIHIQRKSHCASKARRFFDGVTRSTNALEPWLFAIQAEQMRKKLTENVQRADVGEIHSTIPETGLTNRIVALFEHAVQSESGTHCPLLWRMYLNFLASLGKKEKSKGLFYKALQNCPWAKVLYMDAVEYFPDQLQETIDLMTEKELRVRVPLEELDLLLEV"
     misc_feature    566..844
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(566..592,599..604,614..619,623..625,629..673,
                     680..688,692..700,722..730,740..745,749..754,761..781,
                     800..811,821..844)
                     /gene="NRDE2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1034..2029
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
ctcgagccgcggcgccatcttcccccgccgctccgcagggcacttcgggcagatagtagtggcggcaagctgagagatggccctgttcccggcatttgccggtgccgctgagcccggggggcccccaaccggcagcagcgagggctccaggaaagaattggactggcttagcaacccaagcttctctacagaagatgcactattactgcatcagcggactacagaagttgcaaatctcatccctgaaaaatcaccactaataaggactacttcaagatcagagttgtcaggggaaagtgatacagatgagagtctgaggcagtcaagtaagaagaggaaaaagaaaaagaaaaagcatcaccattataagaagacaaaaaagaaaaccagaggggactccagtagcagcgaatcagacctggacactaagcgcatcgaggacaaagccccaagaagtggcagaaatcacgaaaaggaagcagcagcaaatctagataagaaaacatcaaatcttaccagcaatcgttttgtttggcttgacgatatccaggatttgacagcagaaaccttcagaatagacaagaaaccagaccctgcaaactgggcctacaaatccctgtatcgaggagacatagcaagatataaaaggagaggagagtcgtgtcttggcatagatgtaaagaaacagtgtataacttgggacagctctgcatcaaaaaggaagcagttacagaggcaacccgagcgctacttcacaaagaacaatgtgaagatgctgaacacagatgggattcctgtttgcagtaagagttctacatctgacccaactgcttttataccggttttccaaatggaaactgatgatcattctgacacaacagaggtaaatcctcttgggatttatgatccgtcaactacagtgtggctgcaaggaaaagagtgcaagagtgcagaccatgaacctgtaaatacgcagcaaacaactcaagagcctgggataaacattaactccactctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatattaatgcctggatggagtttgtttcttttcaggatgaattaatgagaggacctagcccttatgccagtaagggagagcaggaagtaagaagaaaatcactgaagttaatcttagaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgatctgaaacttgccaggctgaagctttgcacagaattctgggaaccagcagctttgatcaaagaatggcagaagctaattttcttacatcccaataatccagagctgtggaagaaatatctcctgttctgtcaaagtcagttcactaccttttctgtttcaaaaatcaatagtgtctatggaaaatgtttgactacattggcagctgtacaggatggcagcatggtatctcatcctctactgcctggcacagaagaagctatgctagctatatttattcagcagtgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctggattgctcttaagactgatgatgatgatgatgaagagatagatgaagatcaagaaataaaggataaaactctccccaagtggcatatttggttggatattgaatattctcgtgaagcaaggcactggttaccttggaggccagacaaaatgaaaaaggaagctgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatctttaatccagatttctaatccagatcttcagcgtcagctcctgtactcattcttgcaattcctgggagttccatgtacaagtaaactctttccttccaacctctatattgccatggatgaaaataacatctttgacagtgtgctttctgatgaaaagccactgacttctgttgattttccgctttgtggattcaacagtattggtcatatggacacgatgctacgaggaagacatcacataggccactataaagaaggagaggagttcatacagaatgtttttcatgttctattcctgctattttcaggaaaggaaaaatctaacctgtccttttgttggttgcagtatgaaatatctaaggtagtccagtgtctccaagtgaaaaacaagaagaagctgaaagcacaagggaaaaagagtaaaaagttggccaagaatctccttaaagaacccgacaaccgaaaccacctttctctctggaaactgtatgcctacctggaatggctgcttggtaacattgatgatgccaggaaggtatttgacacagctctttgcacggcggggacaggaggattgaagagtccccagctctgcagcctcagtctgctttatgctcagctggaagtggaactgctagaaagtatagaaggagcggttatgtcacgtgctgttcacatattgaccaaattggctgaaagtggaccatatgtgccctataatggacaggtgttacctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactacaagattatttaagtaaaacatcagtttctaatcaggatcaggtcagtgatgcgaatcagctggtgaacttggttggctgttacgcgctcttccagtatttgactgttgggattgatgctgcagtattaatatacgcacagacttcagaaaaacttgaagctgctggtccacagacatgtgaaaatactggagagaatgttggcattcagaattttcccactgctcttgaagctgtcacactgctgcatacaaatttactcagattccacatgaaaattagtgtttatcctttgaatcctctgcgagaggcactaacggaggctctgaaacggtatcctagcaacctgcctctttggaggtcatacatccacatccaaaggaagtctcactgtgctagcaaagcacgaagattttttgatggtgtcacaaggtctactaacgctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcactgagaatgtccagagggcagatgttggtgaaatacattctaccattcctgaaactgggttaacaaatcggattgtagctctgtttgaacacgcagttcagagtgaaagtggtacccattgtccactgctgtggagaatgtatttgaactttctggcttcattaggaaaaaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggtactctatatggatgcagtagagtacttccccgatcaactgcaagagacaattgatctaatgactgaaaaagaattgagagtgcgggtacctctggaagagctggatctgctattggaggtttaaaagatgactgtagatgagtggagaaggtgcaggagttagttccaaaactaacatttagacctgtctcttctcaaacaggaactctgctgggacttgggtactatggactacttttttttttttttttttaaagttgtttttgttttgtttttttaagcttttatataaattgctatcaaaatggagttccagtagctgcaagtactctggaatcaagtactgctttttgcccacaaaaatgcatccgtttctctgaagcattgctggctcccacagaaggataccctcttataaatagcctcctgttgaacgctgcccacatttcttattctattgtttgaaatcacattccctagagttcagcagagatccagtacatgccaactatggtttggtgggcagcacaggaaataaacatctgccagaatggatgctccactgtcctccagttggcagacttcagtgatttccttcagctgggtatgcatgcgcatgtatatataattgccaagtcaaacggccgttagtctgtacatatactgttagtaaaagctaaatctctgcttgagcaggcacctattttggacttgtatttgtatgttttgacagatgaccattttaatatgaatatttatgaaaaatatacctgaatgtttgaaaattcaaaagtaattatttttgatttcttaatttaatagaactgagtgtactaaaaccaaaaatgtatccataatgcatctctaaccagctcactttttaacaagcttttgtaattgatctctcactttttgattcaaatacaggcagtcgtcataagaagtaggggtctggtctgtatttaatccgcaccaaaggaggcagagtagtcaaaacatgattgtttaattagtagtttctactccaggagtctttaggcaagctcctagagaagtaatatggaatatggtaacaatttaaaggtatagttatggtacatacttattttataaggcagaatatgctgaaatgggtgaaagactgtttagcatccctactcctgagatgcaagtgctcagaaactggatcttcatctgtaagggagggtcctgcagctgctgaatacccaaatctgttccagaggtttttcaggagaaaactatcactaacagcactgaaaggatcggggtcatcagcaggtgagggccgattgcacagaaaactctgcctggacaaagccatacaacctatggttcggttttgcctgtagcaccacaatacaaggtataatatgttgtagttcaggctgcacttcatttattcctttctaaaaggaaatactacggggaatatgcagaattttaaatgacattacagcacttcttaagagccttataatattgctatggttgcaggtgatgctggttttgctgtaaaagtaattgatttgtctttgtaaaaaatactcattttatttttaaaatccatgctgctttctgaaatggcggagctcctgaactgggggtaggagttaactctgtgcaccgaacagtaacattgcaaatggtgtgcacatgcgtgtgtttttgctctcctgtcagagcaaaatccatttcctctaaagccgtggaagggaggcggagagggggaagcctgatggtgctcctgtgtgtgtctctcttcagagtcatagaatcacggcacagccccagcagggagggacccccagagatcatctgctccagccttttgtggggcagggagcctaagtgggattatccagcaacctgtccagtctcctcttgaaaacctcccccgagggcagcaatggctcttgttcagtcaccttgctcttccctgcatcccctccccaggccctttcctttgcacagctcctccctttgctcagggcagtcggaggctgctcgcttgctggagctcctggcctaaatctggcctggtaatttggaccccagtagctttttctgcccttagagggaatatactcgctgttctctctctcctggtctttacctttgtcttgatctctgtgactcaagttcaggaagcagggagaaaggggcagaagttaaattctgctgcaaaaggttaagaatttaattttgaagtacgtttctttttcagttcctgttgtggcagccagggtaccagcaggcagctcgtggtttagctcagcacattgcagcttcccttcaggcagctgaaccgacctcgtggtggttggtgcttctaagccagcgttaacagccatgtcccagatgaaaaaagccctgttcgccacacatgtcataaagctcttcagcccctcgagcgatgatgagatcaactgccatgatgaggaagtgctaaaaaatcactggctttttgtgacctttccaaggagacagatctcataaggtttgtaagaatgggtaataaaacttgacttgttgtttttctatctccagctgaaaaacaactctattttggggttcctgtcatccagattaaataaaaagactccattcatctgtagggtttgtttttaacaatgaaccacataatttttacatagaaaaacaacatctcttggccttgctgctaccattgttgttacagccctggcagttaccaaagggattgctctgtgttcaactcccaaatgtctgttatgggccagcatttgctcccacagaaagtttccagagcaaagactgcacgttgcttaactgtggtctgtatatggaactctaacaaatcttaaaaagcatacacacatttggtaattaattaattactcagaccttaacaagtgcttcacagaagtacactacagagtacagtatagacattgctacagcttagcaaagtagaaatgaaacccccttgggggtggaggtgcaggcagtaggtttgtttcacagaagggcaagggttggaggtcatctagtccaaccctcctgctaaagctggttcaccgagagcaggttgcaaaggtcatcatccaggcagcttttgaatatctccagagaaggagatgccacaacctccctggacagcctgtgcc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]