2024-03-29 19:01:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009635352 3708 bp mRNA linear VRT 20-AUG-2020 DEFINITION PREDICTED: Egretta garzetta argonaute RISC component 4 (LOC104123135), mRNA. ACCESSION XM_009635352 VERSION XM_009635352.2 DBLINK BioProject: PRJNA253831 KEYWORDS RefSeq. SOURCE Egretta garzetta (little egret) ORGANISM Egretta garzetta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Egretta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_009259109.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 20, 2020 this sequence version replaced XM_009635352.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Egretta garzetta Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3708 /organism="Egretta garzetta" /mol_type="mRNA" /isolate="BGI_Z169" /db_xref="taxon:188379" /chromosome="Unknown" /sex="male" /country="China" gene 1..3708 /gene="LOC104123135" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:104123135" CDS 181..2565 /gene="LOC104123135" /codon_start=1 /product="protein argonaute-4" /protein_id="XP_009633647.1" /db_xref="GeneID:104123135" /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 190..444 /gene="LOC104123135" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 475..627 /gene="LOC104123135" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 628..990 /gene="LOC104123135" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(784..786,829..831,871..873,883..885,937..939, 958..960,964..966) /gene="LOC104123135" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1129..2436 /gene="LOC104123135" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1540..1542,1552..1554,1588..1599,1606..1608, 1630..1632,1639..1641,1651..1653,1663..1665) /gene="LOC104123135" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1744..1746,1750..1752,1990..1992,2404..2406) /gene="LOC104123135" /note="active site" /db_xref="CDD:240015" ORIGIN
cccccggcaagcctcttccagccgccccgtcgcccaggcctgggaactgttgggaaacccatccgcctcctagccaaccactttcaggttcagatccccaagattgatgtttatcactatgatgtggatatcaaaccagaaaaacgcccccgaagagtgaacagagaggtggtggatactatggtgagacacttcaagatgcagatatttggtgatcggcagcctggatacgatgggaaacggaacatgtatactgcacacccgctacctatcggccgggatagggtggatatggaggtgacgcttccaggagaggggaaggaccagactttcaaagtatccattcagtgggtgtccgtcgtcagcctgcagttgctgctggaagctctggcagggcacttgaatgaagttcctgaagattctgtacaggcacttgacgtaatcacgcggcaccttccctccatgaggtacactcctgtgggtcgctcctttttttccccccctgaaggttattaccaccctctgggtggtggcagagaggtctggtttggtttccaccagtcagtcaggcccgccatgtggaacatgatgctcaacattgatgtgtcagcaactgctttctatcgtgcgcagcctatcattgagttcatgtgtgaggtcctggacattcagaatatcaatgaacaaaccaagcctctcacggactcccagcgtgtcaaatttaccaaagaaatcagaggtctaaaagtagaggttacccactgtggccagatgaagagaaaataccgagtttgcaatgttactcggcgaccagccagtcatcagacgtttcctctgcagctggaaaatgggcaggctatggagtgtacagtagctcagtattttaagcagaagtacagcctgcagctaaaatatcctcaccttccctgtctccaagtaggacaggaacagaaacacacgtacttaccgcttgaggtgtgtaacatagtggcaggccagagatgtataaagaagctaacggacaatcagacatcgacgatgataaaagcaactgcaagatctgcaccggaccggcaggaagaaatcagcaggctcgtgaaaagtaacagtatggttggtggacccgatccatacctgaaggagtttggtattgttgtccataatgaaatgacagagctgacgggcagagttttgccagcaccaatgctgcagtacggaggcaggaacaagactgtggccacaccaaaccaaggtgtgtgggacatgagagggaaacagttctacgctggcattgagattaaagtttgggctgttgcctgttttgctcctcaaaaacaatgcagggaagacttactaaagagttttacggaccagctgcgcaagatctccaaggatgcagggatgcccatccaaggccagccctgtttctgcaaatacgcccagggtgcagacagcgtggagcccatgtttaaacacttaaaactgacttatgttggtctgcagctgatcgtggtgattctgcccggcaagacacccgtatatgctgaagtaaagcgagttggtgacactcttctaggaatggccactcagtgtgttcaggtaaagaatgtggtaaaaacctcaccgcaaacgctgtccaacctgtgtctgaagataaatgcaaagcttggaggaatcaacaatgtgcttgtacctcatcaaaggccctcggtgttccagcagccagtgatctttttgggagcagatgtcactcaccctcctgctggggacgggaagaagccttccatcgctgctgtggtaggcagcatggatggccaccctagccgttactgcgctacggtgcgcgtgcagacctcccgccaggagacctcccaggagttgctgtacagtcaggaggtgatacaggacctgactaatatggtgcgagaactattgattcagttctacaaatccactcgtttcaagcccacaaggatcatctactacagagggggagtatcagaaggacagatgaagcaggtagcttggccagaactgatagcaatccggaaggcctgtattagtttggaagaagattatagacccggaataacctacattgttgtgcagaaaaggcatcacaccagattgttctgtgctgacaagactgaaagggtgggtaagagcggcaacgtaccggcaggcactaccgtggacagcacgatcacgcatccttctgaattcgacttttacctctgtagccatgcaggaattcagggaaccagccggccctcccattaccaggtcttgtgggatgacaactgttttactgcagacgaactacagctgttgacgtaccagctgtgtcacacgtacgtccggtgtacgcgatccgtctctattccagctcctgcatactatgccaggctggtagcgtttagggccaggtaccatctcgtggacaaggatcatgacagtgctgaaggcagccacgtgtcgggacagagcaatggccgcgatcctcaggctctggcaaaggcagtgcagatccaccatgacactcagcatacgatgtattttgcttgagagcatctgggaagatgaggcaaaaccaacgacccgtgcagtcctgaaatgttttgaatgcctactgctatggctagggcccagtttatttcagactgcccgctaccagcagctctgaacagtcgcactgaatctgtacttcacagcaatgtctgatgcaccaacacaattgagccatttgtttcattattttatgtaatagaaattcatagactgtcttttctgatgcattggactgaatttttacctcaaagcgcaaaaggctgatcatcctgaaatttttaaaggacttggcacgaaaggtttctattgaatattttgctagctatcgtttttaagttatcttctcatcccgtgagtttatcatgacgactgattccctgtcttcatgcactgcttcgtgagtatgcgtattacggcaaaacgttttactccagtgaaatgtaattgttctattgtgtggggccatagattttttaatggagattttagacttcactactgtaaatgccttttaacgaacataactttcacaggtattgcagttttttgtcggttttcctaattatctttttaatctctgcagacttcggctgcaaagcaattgcactatactgcgagttcagatgggtggttcttgttctgtgaatgtgtaatataaccagatagcgatgcctgtcagtagattttaattgtaatggttacaaataatactgccatggtatcctaacaagtactgaaccatcgtttccccctctaaaaatgataaaaaaaaaaaaaaaaaaaaaaaattagcttttaggtattttgcagacttttacaaaagtgcccactttatgctgctgtgtggtttgataaatctaagtgattttaaaacttttttctcataggaggtttaactttggcaataaatatttgttttttaagccccccaacagtgtaattttctagctgaggattgtgcatgagtttaaccaatgttctcgtgtcgtttccgaacacacaattcggcagtttctgaaactcattagaaaagacgcacttccatgcttttttttaagaattatttttaactgttttatattcactgttggtgtcctgtctacaacatttttttataagcttggaaactgggtgttacgt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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