2024-05-02 19:31:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_007533088 7478 bp mRNA linear MAM 11-OCT-2023 DEFINITION PREDICTED: Erinaceus europaeus argonaute RISC component 1 (AGO1), transcript variant X2, mRNA. ACCESSION XM_007533088 VERSION XM_007533088.2 DBLINK BioProject: PRJNA986567 KEYWORDS RefSeq. SOURCE Erinaceus europaeus (western European hedgehog) ORGANISM Erinaceus europaeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080174) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Oct 11, 2023 this sequence version replaced XM_007533088.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_950295315.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/04/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7478 /organism="Erinaceus europaeus" /mol_type="mRNA" /db_xref="taxon:9365" /chromosome="13" gene 1..7478 /gene="AGO1" /note="argonaute RISC component 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 52 Proteins" /db_xref="GeneID:103122473" CDS 252..2825 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_007533150.1" /db_xref="GeneID:103122473" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 351..743 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 771..923 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 924..1286 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1080..1082,1125..1127,1167..1169,1179..1181, 1233..1235,1254..1256,1260..1262) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1419..2696 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1830..1832,1842..1844,1878..1889,1896..1898, 1920..1922,1929..1931,1941..1943,1953..1955) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2034..2036,2040..2042,2250..2252,2664..2666) /gene="AGO1" /note="active site" /db_xref="CDD:240015" polyA_site 7478 /gene="AGO1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cgtccgccccctgggcctggcggtcgcgcctgcgcactagctgctggccgggcgctcgcagggggagctgctgcaggctccgcagcggcggcggcaacggaggcggcgggggcgacggtgcgagcggccgggcttggggggggagccgagcccggcccgggagcccgaggaggtagggcccgggctacctaggcccctcacgctggattccacagactctgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcgcctacctgccccctctgcagcaggtgttccaggcacctcgccgaccgggcattggcactgtggggaaaccaatcaaactcctggccaattactttgaggtggatatcccgaagattgatgtataccattatgaggtggatatcaaaccagataaatgtccccgaagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcctgtatatgatggaaagaagaacatttacactgttacagcactgcccattggaaatgaacgagttgactttgaggtgactatccctggagaagggaaggatcggatattcaaggtttccatcaaatggcttgccatcgtgagctggcgtatgctgcatgaggccctagtcagcggccagatccctgttccgctggagtctgtgcaagccctggatgtggccatgaggcacttggcatccatgaggtacaccccagtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaagtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcggccactgccttctacaaggcgcaaccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgaacagcccaagcccctcacagactctcagcgtgtgcgcttcaccaaggagatcaagggcttgaaggtggaagtgacccactgtgggcagatgaagaggaaataccgagtatgtaatgttacccgacgccctgcgagccatcagacgtttcccttgcaactggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgtctgcaagttggccaggaacaaaagcatacctacctacccctagaggtctgtaacattgtggctgggcagcggtgcatcaagaaactgacagataaccagacatcaaccatgataaaggctacagctaggtcggctcctgacagacaggaagagatcagccgactgatgaagaatgccagctataacctagatccctacatacaggaatttgggatcaaagtgaaggacgatatgacggaggtgacagggcgcgtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgctacacccaatcagggtgtctgggacatgagggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgccgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggacgcagggatgcccatccagggccagccttgcttctgcaaatatgcacagggggcagacagtgtggagcccatgttccggcatctcaagaatacctattcagggctgcagctcatcatcgtcatcctaccaggaaagacgccagtatatgctgaggtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtacaagtgaagaacgtggtcaagacttcacctcagactctatccaatctctgcctcaagatcaatgtcaaacttggtggcatcaacaacatccttgtcccacaccagcgctctgctgtttttcagcagccagtgatattcctgggagcagatgttacacaccccccagcaggagatgggaaaaagccttctatcacagcagttgtaggcagtatggatgctcaccccagccgttactgtgctactgtgcgggttcagcgaccgcggcaggaaatcattgaagacttatcttacatggtgcgagagctgctcattcagttctacaagtccacccgtttcaagcctactcgcattatcttctaccgagatggggttcctgaaggccaacttcctcagatccttcactatgagctgctggccattcgtgatgcctgcatcaaattggagaaggactaccagcctgggatcacatatattgtggtgcagaaacgccatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacattccagctgggaccactgtggacaccaatatcacccatccatttgaatttgacttttatttgtgcagccacgcaggcatccagggtaccagcagaccatcccattactatgtcctttgggatgacaaccgtttcacagcagatgagctccagatcttgacataccagttgtgccacacttatgtacgatgcacacgctccgtctctattccagcacctgcctattacgcccgcttggtggctttccgggcacggtaccacctggtggacaaggagcatgacagtggagaggggagccacatatcagggcagagcaatgggcgggacccccaggccctggccaaagctgtgcaggttcatcaggatactctacgcaccatgtactttgcttgaaggcagaacgctgttacctcactggatagaagaaagcttttcaagccccaagagctgtgccgcccaaatccagaggaagcagggaagatggaggtggggtagggaggagtacagaaggccttgattccttctcagaggggactaacaggtggggagcaaggcctgtaagtcagaccaccagccagaaatctctgatatccacctcatgcccccccacacccctcaccgcatcttgtcacatctggccctgaccccactggaccaagaggggcagcaccggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcctgacagcttggtaaggttggttgtgcagccctgcggacaaaagctggtaggtttgagtttgatatattagatgggaaaatgaggggcttgaggcagcgggtaggaggagaggatgattttttaggagccttaatcagaaaaggtctagatttgtttaagaagaaaaatgaaaccagacccagattgatattttaggatactagatgttttaatggtgtgagaatcaagtttataggaagatttttaatgctaatggttttggttcctcttcccccagctgccacttcctttacccttaattcctttctccccaccttttctacccctcctccttagacctcctccctggcagacacccagccctatggcactatggcacttagctctgaagtgacatgaccctgtcttccttccgcctgctggtgggcaaccagtgccttccctgtaatggtaatgctgcagaactgcaaccttttgtacctttcttgtgagggtgggggtagggtggggaggggtggggagggagagaggaggtaggtgggggataagcctaactcaacaggtttccagctattttgcatttgaaggatttgacttccacattcattaagcttttttaaaagaccacaacctcagatggttaaaaatccattgacatttgcactttcagacataacaagtctccaagctgctgagatgactgacccctggtctttccacttaggtctcctttttcactgtcctccctcctccccaaccttcctgggtctggagttacttgagtagaatttctcactgttgggattccccctcccccaagggtcaaatctcttatgcttcaatatttcttaactggggtatcatataacaaaatcctgaagtaaaacgagcaaaatctaaatgttatttttataccataacttgagtctattgccaaaatctgcaaatccttcccatgcctgatgagtttacatcgcagaaacattgagccatcagaaggaactttacttgttctttggcttgacttggaaagaggtggttatctctcaaaggtgggactcaggctccactcttcctctgtgtagaaaaataccttttcttactataattccttcctctgcactgccctgcgctcttctatacaagtgcatttttccttcctctgaactgtcctctaacatgtcggcgcatcccaaactctaatgtgtcctgtggacaggctgagatattttgctgctccccgattgcttctgtttacagaaatgaatttctcctggtttcctactagggcatgtaagtgggtggcatgggatttttccccccccttctcctctcgcctagatagagagaagggtttgactgttctgcagaactggaaaagtacggggttctggcttggtgcctgttggccttgaagcaggaccccgtcttttcatgactgtttgttgtatcctgtcccacttcttgggattaggagttgcagtttccatgtagaaacttctctttttgaggagcctaaatttcggtttgcccccaaatggtgatgaagccatgtcactttaggcctgtccctgacttggaggcctgctggaggaagccctgaatcctgacctgtgcagttagagccaccatttccccttttcctgcaacccatgtacagactcagatttgctatgcaaaacagactatcccaggttgggttctggttggctactttgttcaatgagttcacaaaatgtagcacaaacactgactatagtgaaggcattgggactgttgagtaattcctcctttacccctttcctgccacctacagcatagggttccccctgggcctagcccagctgaagaacagaacagagggctctaggagggggtgactcactggagagcctacattccttacacaagtgcctacagagagtgatgccaacactccatctgccctgttcattgccttcatatactgtctacttcgtgttcagtcaccctttggagagaggagctcttgggacagcgggctctgcacattctcttcttgggtacattttaggactggtatcagggcactattcctggagggtccagtcattcaccagcatttgcaaatgtcaatagggagctggtagtagctaccagctcagcaacaaatgtgtgttctctccttttctttccttgctctactttcctcgtttgaattttagctggaatttgaaatacattttttagccctctggcagtgtgcatgccattcaagaaataaaagcaagacaggcagcttgggcaacgtcaaggaaataaactgcttagatttttttatttatatatattttaatttttgagacttgaaaaatacttttgaccttgaggatcattgcttgcaaggtggtgcatgcagaataagaagtgataatggcaataagctttggctttcttggcttggtttaagtggtgcttcttacttaaactccgagaaagctatggggagaccctggcctcattctctttgacagatcccttgctcccttcattccactcttgtcttccatttccttttcagtctctccctggcttccttgtcttttttctatttactcagcttgcttgctggcctgctgacctgttggcctgtctgcctatgtgatgatgaattctctgcatggctacaatgatcccactgttagctggcaaggtcagactttagcaccttgactgcagaaaacaaagcatctgttcctcaaaactagtgatcctgtctgggttgggctatcctcagacttacacaaggatggagccagcagatctgcctaactagcatgcaatcaggaggactggtggcaacttccatacctttccaccccttggagttggtttcctttgttgctatttctggatctggttctagttctctgtggaccttcatctatgggggtgtcccaaggatatgtgagataggaagactagggaatggagatgggatgagaagagaatgatggaaagacaatggaaagataaaaagtaggaaaggagaacactgctcactaataatttttccagtccagcctgagccattaggggttgaggtgctactaatagtctctggggacaagtctggggctgttattgctgagaatttagacttcgaataatgcagaagaaagtacccacaagtgtgaaacctcccctctaatctcaatctcctggttcccacctactagatagcttcccctgtagcgtcttctttggccacaccacaatgtcctttgataggtttccctttctcctctatagttccacacatgaggctagcacccaatgtgggcagccatagggagggagggatacatggacttattagctggcccatggggtgtctgtaagactggtgagacagtttttagatttggcatcatatgtgatcaagaaggatggaagttccttccccctcagggaggaaaagtcatctcaaactagccaaaatacaattttggaaactatattggggggagaagtgttttatttatatttacgtgacgtaggccaatccaggatggtggctgggatgtcttccttcttaaagtctgatcatggcagggatatgcagggcactctttcctatttggccttctcagctgattgaggagaagagataactgtttttctctatctcctcattttaataaatgaggacttggccgtctcccatgggtcgggagagaggctaggttggtgctcttccctttatatctactcctactgatttagaacctctggctgctgttcgggagcccaatcaagggagtggaaggaatgggctcaatacaaaacaagaaaaccagaataaggtggggaaggcagattttttttttttaatataaaggaaaataggaaaccctccaaggattgtgcaaataaagacaatgtgttgaatgcactgagtcccctggtgtagtagcaataaggaaaaatgcattaattttcctgtgcacacagtccaagctctttggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggttccactttagtttctaaactttttatccctctgaagttcagcatggatgggggaatgttcctggagccccaaagctgtatacttgtttgcatttgtttccccttgagacttgtgtttgtgtcttgctttgagctgtaccttgtccagtccattgtaaaattactccaacagtggtaatgtacagttccttctgaaacaagcaaaagcagcagcacaactctgttttataaagacaacagtggcttctatttctaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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