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2024-03-29 07:27:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_007436997            3628 bp    mRNA    linear   VRT 24-MAY-2018
DEFINITION  PREDICTED: Python bivittatus NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X5,
            mRNA.
ACCESSION   XM_007436997
VERSION     XM_007436997.3
DBLINK      BioProject: PRJNA238085
KEYWORDS    RefSeq.
SOURCE      Python bivittatus (Burmese python)
  ORGANISM  Python bivittatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata;
            Toxicofera; Serpentes; Henophidia; Pythonidae; Python.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_006535520.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 24, 2018 this sequence version replaced XM_007436997.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Python bivittatus Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3628
                     /organism="Python bivittatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:176946"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="liver"
                     /country="USA: Texas"
     gene            1..3628
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:103064229"
     CDS             141..3155
                     /gene="NRDE2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X4"
                     /protein_id="XP_007437059.1"
                     /db_xref="GeneID:103064229"
                     /translation="
MAEGFKTDKKPDPANWQYKSLYRGNIARYKRRSNFCLGLQPKEQHIIWESSAAGKKSSYKRPERYFTKGGRKLLNMDGIHVSSKNQDSSSGLASWIPILQLDPAESPSISWVNPLGVYDLKTTLWLQGKGPPAEHSLPKKQELQENPQNVDSPLMAKVEEYNSKVRENPRDVKAWMDLVSFQDELMRHPSCYAISEGEQEMRRKSSRLILEKKLAILERAIESNPNEVDLKLARLKLCTEFWEPSAVVKEWQKLIFLHPNNPALWQKYLLFCQSQFSTFTVSKTHVLYGKCLSTLSAVYDGSMVSHPALPGTEEAMLAIFLQQCHFLRQAGHSEKAVSLFQALLDFTFFKPDNVKDLPTRGQGEFFEPFWDSGEPRIGEKGAKGWKAWMHQQEKGGWVVINPPDEDEEDVEDEEEIKDRSLPKWQNWLHIERSREARHWLPWRPEKNKKQSLEDCDDPERQVLFDDLGPSLIRLSSPELQFQLLSSFLQFLGVPCRYRLLPSFFYIAMDKNNFFDNEYNNQGTLTSLDMPLFGVSSIGHMDSMVQGEKHVTHAKEGEQFIQNLFHMMLPLFSGKDKSNLCIFWLQYEISKVSQYLKMGKKKKLKLQGKKSKKLAKNLLKAPDNRNNISLWQLYAYLEWLLGNIEDARKVFDTSLGMAGTTGIQNPQFCHLSLLYAKLEAELLVNLEGAVESRATHILTKLAERGHYVPYHGQVLSVNVLKARKTYEHLLQDCLTENSTSDQEHASDSSHLIGLVGCYTLFQYLTLGIDSAVSVYRQVSQKLKENPEKRFSGQHFTTPLEALSLMHVSLLRFHMKMSVYPLSPLREVLLEVLKRYPSNQSLWRAYVQIQSKSHNASKARRFFDGVTRTTKSLEPWLFAIQAEQIKKKLIESVQREPNGDVYATIPEIGLTNRIKALFEHAIETENGAHCPLLWRLYICFMVTLGDKAKSKGVFYRALQNCPWAKVLYMDAIEYFPDELQEILDLIAEKELRVRVPIEELELLLED"
     misc_feature    153..434
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(153..176,183..188,198..203,207..209,213..257,
                     264..272,276..284,306..314,324..329,333..338,345..365,
                     390..398,411..434)
                     /gene="NRDE2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    618..1616
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
gagcactagtggatctgaatctgaggatgggaaagatgatagaaatattgaaaaaagaggaacagaattgaagtaccttagaagataaaaccacaaatgtgccctatccgtctgtttggcttgatgacattcagggtttgatggcagaaggattcaaaacagataagaagccagatcctgcaaattggcagtataaatcactatatcgaggcaacattgcaaggtataagagacgaagcaacttctgccttggcctccaacctaaggagcaacatatcatttgggagagctcagcagctggaaaaaagtcttcctataagcggccagaacgctacttcacaaaaggtggtcggaagctcctgaacatggatggcatccatgtcagcagtaaaaatcaggattcctcatctggcttagcttcctggataccaattttgcagctagatccagcagagtctccttctataagctgggtaaaccctcttggggtttatgatctgaagaccacactgtggctacaaggaaaaggcccccctgctgaacacagcttaccaaagaagcaagaacttcaagagaacccccagaatgtagactcccctctaatggcaaaggtggaagaatataacagcaaagtcagagagaatcccagggatgtcaaagcatggatggatttggtttcttttcaggatgaactcatgcgacatcccagttgttatgccatcagtgagggagaacaggaaatgagaaggaaatcatccaggctaatattagagaagaagctggctattttggaaagagcgattgaaagcaacccaaatgaagtggacctgaaactagcacggctgaagctttgcacagagttctgggagccatcagctgtggtgaaggaatggcagaaattgattttcttgcacccaaacaacccagccctgtggcagaaatatctcttattctgtcaaagtcagttcagcacctttactgtttccaaaacacatgtcctttatggaaaatgcctgagcacgttatcagctgtatatgatggcagtatggtatcacatcctgcactgccaggcacagaagaagccatgctagccatttttcttcagcaatgccatttccttaggcaggctggccattcagaaaaagctgtgtccctgttccaagccttgcttgactttaccttttttaaaccagataatgtcaaggatctgccaacaagaggacagggggagttctttgaacccttttgggacagcggagagcctcgaattggagaaaagggagctaaaggttggaaggcctggatgcatcaacaagagaagggtggctgggtggtcatcaatccacctgatgaagatgaggaagatgtagaggatgaagaagaaataaaggatagatctctaccaaagtggcaaaactggcttcatattgaacgttcccgggaagcaaggcactggttgccctggcggcctgaaaaaaacaagaaacagtcattagaagattgtgatgatccagagaggcaggtcttatttgatgaccttggaccatcattaataagactttccagtcctgaacttcagtttcaactactctcctcatttttgcaattcttaggagttccatgcagatatagacttttgccttctttcttctatatagcaatggataaaaacaacttctttgacaatgagtacaataaccaaggaactctgacttctttggacatgcctctttttggagttagtagtattggtcatatggactcaatggtccaaggtgagaagcatgtgactcatgctaaggaaggagaacaatttattcagaatctcttccatatgatgctgcccttgttttcaggcaaagacaagtctaacctatgcattttttggcttcagtatgaaatctctaaggtatctcagtatttgaaaatgggaaagaaaaagaaactaaaattgcaaggcaagaaaagcaaaaaattagccaaaaaccttcttaaggcacctgacaacagaaataatatttccctttggcaactgtatgcctacctggagtggttacttggcaatatagaagatgctagaaaggtttttgatacatctctggggatggctggaactactggaattcaaaacccccaattctgtcatcttagccttctttatgctaaactggaagcagaattgctagtaaatctagaaggagctgtggaatcacgtgcaacacacatattgaccaaattggctgaaagggggcattatgttccttatcatgggcaagtattatcagtgaatgttttgaaagctcggaaaacatacgagcacctgcttcaagattgtttaactgaaaactccacttctgatcaagaacatgctagtgattctagtcatctgattggtttggttggttgttacactcttttccagtatttaactcttgggattgactctgcagtgtcagtataccggcaggtttctcaaaagctgaaagaaaatcctgaaaaaaggtttagtggtcaacattttaccacgcctcttgaagccctctccctaatgcatgtcagcttgcttaggttccacatgaaaatgagtgtatatcctttgagtcctcttcgtgaagtactgttagaggttttaaagagatatcccagcaaccagtctctttggagggcgtacgtccagatccaaagcaagtctcacaatgcaagcaaagcccggcgtttttttgatggtgttacaagaactacaaaatcactggagccttggctgttcgcaatccaagcggagcaaataaagaaaaaactaattgaaagtgtccagagggagcccaatggagatgtgtatgcaaccattcctgaaattgggttaacaaatcgaatcaaagctttatttgaacatgcaattgagactgaaaacggtgctcattgtccattgctctggaggctgtatatatgcttcatggttactttaggagataaggcaaaaagtaaaggtgtattttacagagcgcttcaaaactgtccctgggcaaaagtgctatatatggatgcaatagaatactttccagatgagctgcaagagatccttgatctaattgctgagaaagaactgcgagtgcgggtaccaatagaagaattggagctgctccttgaagactgaggaatggtacaaagatatgaagacaaatgattagcttgttggtttaatgaatgttcaatatagctaaggagaaaatgcttgtgattaatttatcatctgtaaaaatgtataaaataaaggtttatattttttttatccaaacatatctattccattaagtgcaggtatgggtacaaaggcttttaagtaatacccttaactgcctcactgctaaaaatgctagtccagataaaaaaagccaaatatatctaggataaagtgcagttcaatgggaagttgtttcctcccaattggttctgattttttggatgactgtttatccatgattgaaacacctttgaattgtataggtcatcagtttaaactcatggaaacatgcagtaatttgacagtttagaagaaatacaggtaatcctcgacttacgaccacaattgggaccagaatttccatcgctaagcgatgcaatcataaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]