2024-03-29 07:27:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_007436997 3628 bp mRNA linear VRT 24-MAY-2018 DEFINITION PREDICTED: Python bivittatus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X5, mRNA. ACCESSION XM_007436997 VERSION XM_007436997.3 DBLINK BioProject: PRJNA238085 KEYWORDS RefSeq. SOURCE Python bivittatus (Burmese python) ORGANISM Python bivittatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Henophidia; Pythonidae; Python. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006535520.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 24, 2018 this sequence version replaced XM_007436997.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Python bivittatus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3628 /organism="Python bivittatus" /mol_type="mRNA" /db_xref="taxon:176946" /chromosome="Unknown" /sex="female" /tissue_type="liver" /country="USA: Texas" gene 1..3628 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:103064229" CDS 141..3155 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X4" /protein_id="XP_007437059.1" /db_xref="GeneID:103064229" /translation="
MAEGFKTDKKPDPANWQYKSLYRGNIARYKRRSNFCLGLQPKEQHIIWESSAAGKKSSYKRPERYFTKGGRKLLNMDGIHVSSKNQDSSSGLASWIPILQLDPAESPSISWVNPLGVYDLKTTLWLQGKGPPAEHSLPKKQELQENPQNVDSPLMAKVEEYNSKVRENPRDVKAWMDLVSFQDELMRHPSCYAISEGEQEMRRKSSRLILEKKLAILERAIESNPNEVDLKLARLKLCTEFWEPSAVVKEWQKLIFLHPNNPALWQKYLLFCQSQFSTFTVSKTHVLYGKCLSTLSAVYDGSMVSHPALPGTEEAMLAIFLQQCHFLRQAGHSEKAVSLFQALLDFTFFKPDNVKDLPTRGQGEFFEPFWDSGEPRIGEKGAKGWKAWMHQQEKGGWVVINPPDEDEEDVEDEEEIKDRSLPKWQNWLHIERSREARHWLPWRPEKNKKQSLEDCDDPERQVLFDDLGPSLIRLSSPELQFQLLSSFLQFLGVPCRYRLLPSFFYIAMDKNNFFDNEYNNQGTLTSLDMPLFGVSSIGHMDSMVQGEKHVTHAKEGEQFIQNLFHMMLPLFSGKDKSNLCIFWLQYEISKVSQYLKMGKKKKLKLQGKKSKKLAKNLLKAPDNRNNISLWQLYAYLEWLLGNIEDARKVFDTSLGMAGTTGIQNPQFCHLSLLYAKLEAELLVNLEGAVESRATHILTKLAERGHYVPYHGQVLSVNVLKARKTYEHLLQDCLTENSTSDQEHASDSSHLIGLVGCYTLFQYLTLGIDSAVSVYRQVSQKLKENPEKRFSGQHFTTPLEALSLMHVSLLRFHMKMSVYPLSPLREVLLEVLKRYPSNQSLWRAYVQIQSKSHNASKARRFFDGVTRTTKSLEPWLFAIQAEQIKKKLIESVQREPNGDVYATIPEIGLTNRIKALFEHAIETENGAHCPLLWRLYICFMVTLGDKAKSKGVFYRALQNCPWAKVLYMDAIEYFPDELQEILDLIAEKELRVRVPIEELELLLED"
misc_feature 153..434 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(153..176,183..188,198..203,207..209,213..257, 264..272,276..284,306..314,324..329,333..338,345..365, 390..398,411..434) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 618..1616 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gagcactagtggatctgaatctgaggatgggaaagatgatagaaatattgaaaaaagaggaacagaattgaagtaccttagaagataaaaccacaaatgtgccctatccgtctgtttggcttgatgacattcagggtttgatggcagaaggattcaaaacagataagaagccagatcctgcaaattggcagtataaatcactatatcgaggcaacattgcaaggtataagagacgaagcaacttctgccttggcctccaacctaaggagcaacatatcatttgggagagctcagcagctggaaaaaagtcttcctataagcggccagaacgctacttcacaaaaggtggtcggaagctcctgaacatggatggcatccatgtcagcagtaaaaatcaggattcctcatctggcttagcttcctggataccaattttgcagctagatccagcagagtctccttctataagctgggtaaaccctcttggggtttatgatctgaagaccacactgtggctacaaggaaaaggcccccctgctgaacacagcttaccaaagaagcaagaacttcaagagaacccccagaatgtagactcccctctaatggcaaaggtggaagaatataacagcaaagtcagagagaatcccagggatgtcaaagcatggatggatttggtttcttttcaggatgaactcatgcgacatcccagttgttatgccatcagtgagggagaacaggaaatgagaaggaaatcatccaggctaatattagagaagaagctggctattttggaaagagcgattgaaagcaacccaaatgaagtggacctgaaactagcacggctgaagctttgcacagagttctgggagccatcagctgtggtgaaggaatggcagaaattgattttcttgcacccaaacaacccagccctgtggcagaaatatctcttattctgtcaaagtcagttcagcacctttactgtttccaaaacacatgtcctttatggaaaatgcctgagcacgttatcagctgtatatgatggcagtatggtatcacatcctgcactgccaggcacagaagaagccatgctagccatttttcttcagcaatgccatttccttaggcaggctggccattcagaaaaagctgtgtccctgttccaagccttgcttgactttaccttttttaaaccagataatgtcaaggatctgccaacaagaggacagggggagttctttgaacccttttgggacagcggagagcctcgaattggagaaaagggagctaaaggttggaaggcctggatgcatcaacaagagaagggtggctgggtggtcatcaatccacctgatgaagatgaggaagatgtagaggatgaagaagaaataaaggatagatctctaccaaagtggcaaaactggcttcatattgaacgttcccgggaagcaaggcactggttgccctggcggcctgaaaaaaacaagaaacagtcattagaagattgtgatgatccagagaggcaggtcttatttgatgaccttggaccatcattaataagactttccagtcctgaacttcagtttcaactactctcctcatttttgcaattcttaggagttccatgcagatatagacttttgccttctttcttctatatagcaatggataaaaacaacttctttgacaatgagtacaataaccaaggaactctgacttctttggacatgcctctttttggagttagtagtattggtcatatggactcaatggtccaaggtgagaagcatgtgactcatgctaaggaaggagaacaatttattcagaatctcttccatatgatgctgcccttgttttcaggcaaagacaagtctaacctatgcattttttggcttcagtatgaaatctctaaggtatctcagtatttgaaaatgggaaagaaaaagaaactaaaattgcaaggcaagaaaagcaaaaaattagccaaaaaccttcttaaggcacctgacaacagaaataatatttccctttggcaactgtatgcctacctggagtggttacttggcaatatagaagatgctagaaaggtttttgatacatctctggggatggctggaactactggaattcaaaacccccaattctgtcatcttagccttctttatgctaaactggaagcagaattgctagtaaatctagaaggagctgtggaatcacgtgcaacacacatattgaccaaattggctgaaagggggcattatgttccttatcatgggcaagtattatcagtgaatgttttgaaagctcggaaaacatacgagcacctgcttcaagattgtttaactgaaaactccacttctgatcaagaacatgctagtgattctagtcatctgattggtttggttggttgttacactcttttccagtatttaactcttgggattgactctgcagtgtcagtataccggcaggtttctcaaaagctgaaagaaaatcctgaaaaaaggtttagtggtcaacattttaccacgcctcttgaagccctctccctaatgcatgtcagcttgcttaggttccacatgaaaatgagtgtatatcctttgagtcctcttcgtgaagtactgttagaggttttaaagagatatcccagcaaccagtctctttggagggcgtacgtccagatccaaagcaagtctcacaatgcaagcaaagcccggcgtttttttgatggtgttacaagaactacaaaatcactggagccttggctgttcgcaatccaagcggagcaaataaagaaaaaactaattgaaagtgtccagagggagcccaatggagatgtgtatgcaaccattcctgaaattgggttaacaaatcgaatcaaagctttatttgaacatgcaattgagactgaaaacggtgctcattgtccattgctctggaggctgtatatatgcttcatggttactttaggagataaggcaaaaagtaaaggtgtattttacagagcgcttcaaaactgtccctgggcaaaagtgctatatatggatgcaatagaatactttccagatgagctgcaagagatccttgatctaattgctgagaaagaactgcgagtgcgggtaccaatagaagaattggagctgctccttgaagactgaggaatggtacaaagatatgaagacaaatgattagcttgttggtttaatgaatgttcaatatagctaaggagaaaatgcttgtgattaatttatcatctgtaaaaatgtataaaataaaggtttatattttttttatccaaacatatctattccattaagtgcaggtatgggtacaaaggcttttaagtaatacccttaactgcctcactgctaaaaatgctagtccagataaaaaaagccaaatatatctaggataaagtgcagttcaatgggaagttgtttcctcccaattggttctgattttttggatgactgtttatccatgattgaaacacctttgaattgtataggtcatcagtttaaactcatggaaacatgcagtaatttgacagtttagaagaaatacaggtaatcctcgacttacgaccacaattgggaccagaatttccatcgctaagcgatgcaatcataaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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