2024-04-24 04:55:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006795275 4831 bp mRNA linear VRT 24-AUG-2020 DEFINITION PREDICTED: Neolamprologus brichardi testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X2, mRNA. ACCESSION XM_006795275 VERSION XM_006795275.1 DBLINK BioProject: PRJNA232513 KEYWORDS RefSeq. SOURCE Neolamprologus brichardi ORGANISM Neolamprologus brichardi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006272037.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Neolamprologus brichardi Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4831 /organism="Neolamprologus brichardi" /mol_type="mRNA" /isolate="N.brichardi 1_Salsburger" /db_xref="taxon:32507" /chromosome="Unknown" /sex="female" gene 1..4831 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:102791996" CDS 131..4831 /gene="topaz1" /codon_start=1 /product="uncharacterized protein topaz1 isoform X2" /protein_id="XP_006795338.1" /db_xref="GeneID:102791996" /translation="
MFPSSSRVKLNRVALKDVVGLKLTPRRRRVPKLPNRISAESKKQEKNSDSVQLMSQKDMVSPPGSNEPDQNLTHTMGFEKKTQAPSTHDEEEPEENGSDVDRHKEPNLSGLAGSEVLLRRAVGASHCGLCGECKYTSPQLKAPGKLKRASPASEPPAAQSEIEKENTITQSSKKIIVWINQYPKVILCDVAKKCEACGHDCGYVLPDALENKVVRCFQQEMRASLRFWPTCLRHNESETEKKALFKSSKCCPSAQDEKTVCQSQSLIRQNHLDEGMHSQPLSHHAVSPFHRSQTGEDSATCSASFLLDEHTKTGNCRGGMRDRDAEVDHGPGSDPVSPETCREKGKVGDSIECSSTLDFAPTDKCCASGGQKGDPTNADGSHVLSDLIDHVSDEDTDAPESYTCQRVKAYLRKIHFSCARTYMAWPFSKTCTANASATAGTIDPSAKDGIDSATANQSMPGSSGNLFKDIPPKAPTEKWEEDGESAFAQGNAKRHRKDMETSPLFNQPEESETRPNSDTASFPPPAQCGRERGTDGVSASALLVNGPETVTSISTPSPSVLSLSDWDTATTLSLMSSPFTQGSMSSLSATTSSLPPSSFIPKRVNVADKILSSCEEAQTASSSPNVPLHTPDSFHSCESSVLPQDEHENDKERFPCRSPPRLDPYYCASPFRGNASVGSLLCSISQEHCVESDSNEFMLPPLLSPVHSPQRQLCQRSFSCCSSSTTDEANMEEEEEEEMNKDASNLPQNDNCKDCLEHHIEELERDLSDFTTPETPRESQSSPSSEEESDDEDDVEQGNRISEQVSLHRKIKPSLSSGVLTEPCSSSCSDEENGAALSDGESHSDTEEGSSPFKIGNREDDKTQGEAAGDSQPGILDELTAYEQDILLVDVIQDDPELFYNLPDQSLLKLGPTRAAEAPGTKPAAVVNTPRRDGASQELQERLAPVTVGLPCDSPDNTEESNSRPWRPHSTSTHTGTQSDTCPTSTEKQSKHVVQSDTNNNHVNSGPERSQPIKTVNSFQNIPPLMSMGTGAWITNSANMMDFRRLKSSSYCRLYFSESLTCGFKMCRFQHLPMEGDEKFCIESVTRFIKNPMCLQKAGAVFTGYYQKNPPGVYFSLPIFFSLLWALLKAGMLSEVFSVLSVGLAHNIVPSHEFLLSLFNCVREKGLMGFVPELMQLTFKMANAGLELSLDCLDCVRNTPLFQQMIHPNSPLVSGNNKVSPGAPFPEYLNLAHSIVEMELCMKQEDWRRIGEVFRGICQSNQHPSQVERISGRIAVALLSEGKDKLSLPFSVFAETVCQNESEDSMVRSFVGRIGVSLMLRYHKTHQWAKGRRVVETLSVLKVGFSTLKGLFGNEDGASRCCLITVAAELFLLSGSVEGALNTLRENKWFLSSSSWPCEPADLESRTRVLIRLAEKTSHRDTLELLCNLPGVKESSDSMDISRYSPLFNSHLQVCVDRQILPVASDTVDFMLSKNLAVEHTVLRILLQKLGKQNLWLRAREVFRHSLSVGYYPGVSAPPGFMTLIVPCRLGEVELALTFEMFITVNATVIHHLSEPTTSLTITLKR"
misc_feature 3842..4360 /gene="topaz1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
cgagggccccgaatagtaacgtaatgatggtttaaaaagaacaagttccagcgttactctgaaaaatacttttatagcagcctggtaaattatttaataggatttggaaggcacagttttaactgttagcatgtttccatcttctagcagggtgaaactcaacagagttgcgctaaaagacgttgttgggttaaagctgaccccgcggcggagacgagtcccaaagttaccgaatagaatttcggctgaaagcaaaaaacaagagaaaaactctgattccgtgcagctaatgtcacagaaagatatggtgtcacctccgggcagcaatgaacccgaccaaaacttaacgcacacaatgggtttcgaaaagaagacacaggcgcccagcactcacgacgaggaggagccggaggagaatggctcagatgttgatagacataaagagccaaacctctccggtcttgctggttcagaagtgttactaagaagagccgtcggagcctcccactgtggtctctgtggggaatgtaaatacacttcccctcagctcaaggcgccgggtaagctaaaaagagctagcccagcgtcagagccacctgctgctcagtcagaaatcgaaaaagaaaacacaatcactcagagctctaagaagattatcgtgtggataaaccagtatcccaaagtgatcctttgtgacgttgccaaaaaatgtgaagcttgcggtcacgattgtgggtatgtgttaccggatgctctcgagaacaaggttgtgcgttgcttccagcaggagatgagagcttcattacggttttggcctacttgtttaaggcataatgaatcagaaactgagaaaaaggctctgtttaaaagtagcaagtgttgtccaagtgctcaggatgagaagaccgtctgtcagtctcaaagtctgatccgccagaaccacctggatgagggcatgcattcacagccattatcccatcatgccgtgagtcctttccaccggagtcagacaggcgaagactctgcaacttgttctgcttcttttttactagatgagcatacaaagacaggcaactgcagaggtggcatgcgtgacagagatgctgaagtggaccatggtccaggatctgatccagtaagcccagagacttgtagagaaaaaggaaaggtaggggatagcattgagtgcagcagcactttggactttgcgcccacagataagtgttgcgcttcaggtggtcagaaaggcgatcccacaaatgctgatggatcacacgtgttgtcagatctcatcgatcatgttagtgacgaggatacagatgcaccagagtcgtacacttgccagcgagtaaaggcgtatttgagaaaaatacatttttcatgtgcacgcacttacatggcctggcctttctcaaagacttgcacagcaaatgcttctgccacagcagggactattgatccatcagcaaaggatgggattgactctgcaacagctaatcaaagtatgccaggttcatccggtaacctgttcaaggacattcccccgaaggcgcctacagagaaatgggaagaggatggggaaagcgcttttgctcagggaaatgcgaaaaggcatagaaaagacatggagacctcaccgctgtttaaccagcctgaagagtcagaaaccaggcctaattcagatacggcatcattcccccctccagctcagtgcggaagggagcgtggcactgatggagtctcagcctcggctttgctagttaatggaccagaaactgtcacctccatatcgaccccttccccctcagtcctcagcctgagtgactgggacactgccaccactctgtctcttatgtcatctccattcacacagggcagcatgagcagcctctcagccacaacatcttctctcccaccttcatcgtttattcccaagagagtcaatgttgctgacaaaatattgtcctcctgtgaagaagcccaaacagcttcttcctctcccaatgttcctctgcacacccctgactcctttcattcatgtgaatcctctgtccttcctcaagatgaacatgaaaatgacaaggaacggttcccatgcaggagcccccccagactggacccatattattgtgcaagtccgtttaggggcaatgcttcagtgggttcactattgtgcagcatctcccaggaacactgtgtagagtcagactcgaatgaattcatgcttccacctttgctctcccctgtccattcaccacaacggcagttgtgccagagaagcttctcgtgctgcagctcaagcactacagatgaggcaaacatggaagaagaagaagaggaagaaatgaacaaagatgcgagcaacttgccacaaaatgataattgcaaggattgtcttgagcaccatattgaagagttggaaagagacttgtcagactttacaactcctgagacaccaagggaatctcagtcttctcccagcagtgaagaagaaagtgatgacgaggatgatgtggagcagggtaaccgaatttcagaacaagtttccttacatcgtaaaataaagccgagccttagctcaggtgttctgacagagccctgctcttcttcctgcagcgacgaagagaacggtgcggctttgagtgatggagaatcacactcggacacagaagagggatcaagcccgtttaaaataggaaacagggaagacgataaaacccaaggagaagcagctggtgattctcagcctggcattttggacgagttaacagcctacgaacaggacatcctgcttgttgacgtgatccaggacgacccagaactgttttacaacctgcctgatcaaagtttgctgaagctgggtcctacccgagctgccgaggctccgggaaccaaacctgctgctgtggtgaatactccaagaagagatggagcgtcacaggagctgcaagagagattggctccggttactgtgggtttgccttgtgacagtcccgataacacagaggagagtaacagcaggccatggagacctcattctaccagcacccatactggaacacagagcgacacatgccctacctccactgagaagcaaagcaaacatgtggttcaatctgataccaacaacaatcatgtaaatagtggcccagaaaggagccagcccatcaagacggtgaactcctttcaaaacatccccccactcatgtccatgggaaccggggcgtggatcacaaactcagcaaacatgatggattttaggcgcctgaaatcaagttcttactgcaggctgtacttcagtgaatcactgacctgtgggttcaaaatgtgtcgcttccaacatctgcctatggagggggatgaaaagttttgtattgaaagcgtgacaagattcatcaaaaatccaatgtgccttcagaaagcaggagctgtgtttacaggatattaccagaaaaacccaccaggagtgtatttctctttgccgatatttttctccctcctctgggctctgctgaaagctggcatgttgtccgaggtcttctccgtcctcagtgttggcttggctcacaacatagtgcccagccatgagttcctcctctccctttttaactgcgtgagagaaaagggtctgatgggctttgtgcctgaactcatgcagctcactttcaagatggccaacgctggactagagctgagtttggactgcctcgactgtgtaaggaacactcctcttttccagcaaatgattcatccaaactcgcctttggtgtccggcaacaacaaggtttcccctggtgcaccgtttccagagtacctgaatttagcccattccattgtggaaatggagctttgtatgaaacaagaggactggaggaggataggtgaggtttttagagggatctgccagtccaaccagcaccccagccaagtggagcgcatcagtggtcgcattgctgtcgcgctcctgtctgagggcaaagacaagctgtcactgcccttttctgtatttgctgagacagtgtgtcagaatgaaagtgaggacagcatggtgaggagtttcgtaggcagaattggagtctctctgatgttacggtaccacaaaacgcatcagtgggccaaggggcgcagggtggtcgagacgctgtctgttttaaaagtcggcttctcaactctgaaaggtctgtttgggaacgaggacggagcgtcacgatgctgcctgatcactgtggctgcagagctcttcctcctgagtggcagcgtggagggagctctgaacacactccgagaaaacaagtggttcctgagttcgtcctcatggccgtgtgagcctgccgatctggagagcaggactcgtgtgctgatacgtctggctgaaaaaacctctcacagagacacgctggagcttctctgtaatcttcctggagttaaagagtcaagtgactctatggatatctccaggtacagccccttgtttaactctcaccttcaagtgtgtgtggacaggcagatacttcctgtggcttcagacacggtggactttatgctctctaaaaacctggctgttgagcacacagtgcttcggatacttttacagaaactgggcaagcaaaacctctggctccgggctcgggaagtcttcagacattctctgagtgtgggctactaccctggagtctcagctccccctggtttcatgacactgattgtcccctgtcgactgggggaggtggagctggctctcaccttcgagatgttcatcactgtcaacgcaacagtcattcaccacctatcagagcccactacttctctcaccattactctcaaaaggtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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