2024-03-29 02:12:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006791716 5633 bp mRNA linear VRT 24-AUG-2020 DEFINITION PREDICTED: Neolamprologus brichardi argonaute RISC component 1 (ago1), mRNA. ACCESSION XM_006791716 VERSION XM_006791716.1 DBLINK BioProject: PRJNA232513 KEYWORDS RefSeq. SOURCE Neolamprologus brichardi ORGANISM Neolamprologus brichardi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006272022.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Neolamprologus brichardi Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5633 /organism="Neolamprologus brichardi" /mol_type="mRNA" /isolate="N.brichardi 1_Salsburger" /db_xref="taxon:32507" /chromosome="Unknown" /sex="female" gene 1..5633 /gene="ago1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:102789100" CDS 453..3029 /gene="ago1" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_006791779.1" /db_xref="GeneID:102789100" /translation="
MEPGPSGAVPMGVFPPPLQQVFHAPRRPGMGTVGKPIRLLANYFEVEIPKMDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQLFGDRKPVYDGKKNIYTVLALPIGSEKVDFEVTIPGEGKDRIFKVSIRWLAKVSWRLLQETLVSGRLQVPLDSVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKTLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNANFNLDPYIQEFGIKVKDDMAEVMGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKSERIGKSGNIPAGTTVDTSITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 459..3023 /gene="ago1" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1623..2900 /gene="ago1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2034..2036,2046..2048,2082..2093,2100..2102, 2124..2126,2133..2135,2145..2147,2157..2159) /gene="ago1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2238..2240,2244..2246,2454..2456,2868..2870) /gene="ago1" /note="active site" /db_xref="CDD:240015" ORIGIN
ttcagattttttgaggggggctaggggctggccttttttgttccgctggagagtcctgcttgaacggtgagcaggagcacaacagaacggcaagaaactacagcgccgcggaccatcggctaaatcagagcaccgggaaggatcccgctgcgccgccgaggaagagtggttcgaaataggacggcatcgccctgcagctgcgccgttactggctatagggtcaacgggcagacgagcaactggcagctatcggcgttagccttaactcctctgcgggtctgggggggttctggtaggggcagggggcgggggtacaccgagaaaggagaagactgcacgccgagaggagggggctggaagtctgagacgcttccagcctgaagggggccggcggtttggccacagcaccccccggactagctagcttgtacccgcgcggctaagtgaatgggatggagccgggaccgtctggcgctgtgcccatgggggtcttccccccacccctgcagcaggtgttccatgcccctcgccggccaggcatgggtaccgtgggcaagcccatcaggctgctggccaactactttgaagtggagatcccaaagatggatgtctatcactatgaggtggacattaagcctgacaagtgcccacgacgagtcaacagagaggtggtggagtacatggtgcagcacttcaagccccagctctttggtgacaggaagccagtgtacgatggcaagaagaacatctacacagtgctagcacttcctattgggagtgagaaggtagattttgaggtgacgattcctggcgaaggaaaggatcgaatcttcaaggtgtccatccgttggctggccaaggtgtcatggcgcctgctgcaggagactctagtcagtggccgactgcaggtcccccttgactcagttcaagccctggatgtggccatgcgtcacctggcctctatgaggtacacaccagtgggccgatcatttttctccccacctgaaggatactaccacccacttggtgggggaagggaagtttggtttggcttccaccaatcagtgcgtcccgccatgtggaagatgatgcttaacattgatgtgtctgccacggctttctacaaagcccagcctgtaattgagttcatgtgtgaggttttggacattcgcaacattgatgagcaacccaaaaccctcactgactcacaaagggtccgcttcaccaaggaaattaaaggcctgaaggtggaggtgacccattgtggccaaatgaaaagaaagtatcgtgtatgcaatgttaccagacgtcctgccagccaccaaacgtttccccttcagcttgaaagcgggcagacagtagaatgtacagtggctcagtacttcaagcagaagtacaacttgcagctcaaatacccccacctaccctgtctacaggtggggcaggagcagaaacacacctacctgcctctggaggtgtgtaatattgtagccggtcaacgatgcatcaagaaactgacagataatcagacctcaactatgattaaagccacagctcgctccgcaccggacaggcaagaggagatcagcagactgatgaagaatgccaacttcaacctggacccgtacattcaggagtttgggatcaaggtgaaggatgacatggccgaggtgatgggcagagtattgccagcccctattctgcagtacggaggacggaaccgtgccatagctacacccaaccagggagtgtgggacatgagagggaagcagttttataatggcattgagatcaaagtgtgggctattgcctgctttgccccgcagaaacagtgcagagaagaggtgctcaagaacttcacagaccagcttcgtaaaatctcaaaggatgctgggatgccaattcagggccagccatgcttctgtaaatatgcccagggagcggacagcgtggagcccatgttcagacacctgaaaaacacatactctggacttcaactcatcatcgtcatcctgccaggaaaaactcctgtctatgcggaggtaaagcgtgtgggtgacaccctcctcggcatggccacgcaatgtgtccaggtgaagaatgtggtgaagacgtcgccgcagactctgtccaacctctgcctcaaaatcaatgtgaagctgggagggatcaacaacatcctggtacctcaccaacggtcagcagtgtttcagcagccggttatcttcctgggagcagatgtcacacaccccccggctggagatggcaagaagccctccattactgctgtggtaggcagtatggatgcccatcccagcagatactgtgccacagtgcgcgtccagagacccaggcaggaaatcatcgaagatttatcttacatggtgcgcgaactgctgattcagttctacaagtcaacccgcttcaagcccaccaggatcattttctacagagacggtgttcctgagggacagttgcctcagattctccactacgagctgttggccatcagagatgcgtgcataaagttggaaaaggactatcagcctggtatcacctacatcgtggtgcagaaacgtcaccacacacgcctcttctgtgctgataagtctgaaaggattgggaagagtgggaacattcctgcagggactacagtggacaccagcatcactcatcccttcgagtttgacttctacctgtgtagtcatgcaggaatacagggcaccagccggccgtctcattattacgtcttatgggacgacaatcgcttcacagctgatgagttgcagattctaacctaccagttgtgccacacttacgtgcgctgtacccgctcagtctccatccctgccccagcctactatgctcgtctcgtggccttccgtgcccgctaccatctggtagacaaagaacatgacagtggagagggcagccatgtgtccggtcagagtaacggtcgggatccccaggcgttggctaaggctgttcagattcatcacgacactctgaggaccatgtacttcgcctgagcgtcaccaaccatcgccgccatcgttccctcccacctcatttctacctgagtgggcaaacggcccaccggcaccacctcatccccatcccttactccctacaattgcccactacacatacttcacagcaatcagtcactcaaatccaagaaacacaaatcccctctcctgtaaaacacaggtagactctgcagcctcatgcactcaaaaggttatgaatattactgttatttttactttaccgggactattgatctttttaagttgaattttgaaatcatgggtattatgtaattgtattgtatgctaccttcacactcctatgtatgtaagtatgcaatacggatgggagaaaaatagaaaactaggcgataaaaaggagaaaaaaaatcctaaaaacttttttaactgccaccacgatgctgcctctacccatccaaatgccggatgccagtattgcaagccccttgttagaggggatcctcattagaggtggtactgggcacgcacacttacatgtatcattttaatgttatcatgaactacattcatgttttttaatgtttttgaaaactgttttttttttaaacagccttgaggagtctggggtatggtacattagcacttagtgttagcatgtaggtgccaccagtcctgcacataaagagtttgttagtacatgcgaggctagccctctggtctttatattatagcagacaaagaaagagcaggtgtagcatattgtagatccaggacaggagtcctgccacacactctgtcctggttggccagtcccttagagatttcgcctttagaggcaagtttagcgtaacagtagagggaccatttgcatagtgtgtatctaatatacttgcaccccatgcacctaaaccagcattgttaaccagccaaaagtgatgccaccctatggaaagggggcactcaaacaggaagataatcttttatttctctatacatcgctcttttagaatttacgaggcactttttaaattttacttttattttattttacttcaaaatggtgaaactagccgttggcgagactttacactctacatttgaacgtttcacacccacacttgcgtagctttcagaacaaaggcaataggcaaggtcaacactattctgtagatttaaaagcaggcaaatatagtctatgatcacttaagtgctgcaaagctgaagtcgccttcagcaactgaccttgctccgatccgtctgcacattccaatgtgtatcagtggaaatggtgccaagcggcgcgctccacgcatccacccgtgcttttctttgcctaactgtaccaacctatcctgcgcctgtcccgcttttacacagagctcttcccctctgcaggcatttacaacagaagcacacacatgcctgcgctctcagtctccttctcagcatgcagagacatagctgatcaaatgcacttgttccccccattcccacgtgaagccaaactcatcaacctttccgccatcaccttttatccttgccgtctgttctcactcgtcgcataacacacctgcagcatcccctgccccaatcccctatgttgtgttagccaatccctattggtgctctgtgtgcgtgggcggcacagataggggattgctacatttgacagggtgggcctctattacgactatttaacatgccctgcctttacatctagtcactttctggatttatggaagaaaaatgcatgtaattattttttatgactggatattctgagccaccttactttggttttcttagaggtaggagcctcgcgctcaccactgcctgtcagtcgttttgcctcgattgtgtaatggttataaagactgcttttttcctttgtcattattattatgaatattgtgactagtgtcagagtgtatcctcaagagggcactgtggagacggtcccaaaattccacctcagttgccctttaagcgcctcaaatcttgtctgatggtcagacccccttttgagtcgaaagggatcaaaagataagagatcagatgagtttgatttttaaatcatgtttatgaacttgcataatcaaaatgcctttgtacaccgttttactgatccttcattgtgtccacggtgatttgtatatatgaatatataatattaacctgttatgtattttggcccagcagttgaggggcttttcacagtcggggccagtcttctacccctcattctgcgtttaaaaaaagaaagaaagaaagaaagacaggaaaaatatcaacctgggggcatttccccaacaccactgaaaccagatgcagttcttcactcactgaagccacaaagcaccttgcaaaggggggagacgaaatggcagtcaccctggaaatgtatcatgtggacacgggagagtccgttccccctccacgcagcctcacggtctgactaagcaatattgaagccactgatcaagaacagtccttgtcatagcacttcccaatagatttgaatgaaaggacgtggaagcatattattttggctctgtatgtgatagtatgggaactctgttggggagggttattttttaaagaaaataaaattgttttttatta
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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