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2024-04-29 07:09:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_006765105            4578 bp    mRNA    linear   MAM 09-FEB-2016
DEFINITION  PREDICTED: Myotis davidii testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_006765105
VERSION     XM_006765105.1
DBLINK      BioProject: PRJNA232515
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Myotis davidii
  ORGANISM  Myotis davidii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera;
            Vespertilionidae; Myotis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_006291554.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Myotis davidii Annotation Release
                                           101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4578
                     /organism="Myotis davidii"
                     /mol_type="mRNA"
                     /db_xref="taxon:225400"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="spleen, kidney and small intestine"
                     /country="China: Taiyi Cave, Xianning, Wuhan, Hubei
                     Province"
                     /collection_date="21-Aug-2011"
     gene            1..4578
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:102762356"
     CDS             1..4578
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1"
                     /protein_id="XP_006765168.1"
                     /db_xref="GeneID:102762356"
                     /translation="
MPKEKRKVTGASSDDPQPGTDLVRKESLTSSESFQTVECSEIRSTPLLRSSGKEVLVDGIKRRRRIKTLESLASPLFKITENKVTQNRKVEFQDELYKNTPKYSCNSVSPGVENNSILKLHDCSCFPHSKDCNDENNLTYKPDGGCIHESENSSELKKENLGSLSDKSDTNNIPQLSNTEENLMGVNKLLLEETDIYQSKNNGLLPCRQNEKNKYSVEESSVGRKPRKRMKVSEKRDEMVIKMNFSNVHNKSELLLQENHTGAESTEAKTLKILRKANHNTLSPVDHLSSLPETVGKKTSPKHLVNTMFQKTLAPLLKEETKNASEPLRSKSTEPEMKSSTVKSPSNCHPIEKRSQEDLRNEAEEFKFTCHRTIPMTGKRTWPCYSCARVTAYCWKKSSLPESNNSLPGSGESVRQDDFLKHQPNQTHLIDSKLPLQSSIKETNSESSSKEKLDSNINCLSAISEVVSAIKPTLMVINEPVIDDEKMKYEEPSRSGLEVVSNATEDTRLTNVTQNLTGNKRKERGTLTKLNLTLASQHGQEANNSTGKTIHRKTCVAKPTVVVPDFVKILNTGRLTNFKIPLLKNKTEKSKEINAKSSEREAYSPLELLDNISGTEIRQNRNKENISTVISGLQSLNIQNSVAPVQSSSDLYCNKNFHRISSSFLKQGNNKPSNCISEPGNVVSNKKAVSLTVEKNTFFCDPGCIEKSPAFCSDEQETFKQVSSEVSGRKTTKNFSDIKIIPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSFTSEVPMVNQEPNVAEEQQSTDSKHVELPEKKEPSDNLREFPVLDPGLKSEICTSLPAASEKKYDFKDANISLGEVTNRTSQNEKLGDCNEHIKSSDLDEKCKFSDKVTIKEEKENMHEVCKSKDSKNAEIMVSECQLATLGPKPLCLSLPPLNLSAFQEDTLKPWMNDFRFSGQHCVLKLQNPETCEIFNREKVVRVFQKSLGLMIPHRYCKFHFNTLRGCERSQCKFAHVPEQGDEKVCMDVLKKYISINELCLLQRAVNMFTEYYRKFPPGIHFDLQVLNDLLNSLLKHCLLKEVFQVLNLSIMVNTLPALKILLEIFEYVATMKLRSAVPALIGIFCKLVEAGLLLDPEHFSYIVKLLHQVQAPKQEITAVLEMKSRLQMRQFKKNWTCDLDLALNEIKHCKENGDWTKLGNLYLKVKMDCEKFVDFQRFCTCVAETLTKGYKEERPSVPFCEFAQTVSKDPQNSEVDKTLLGRIGISAIYFYHKLLQWSKSEWIIDTPQWPCDRLDILNRHNLLCTIAHEILAKSLYRETFEVLQNLPGFQNSQEVVEVSQYSPLFNKLLDACVESNSLGISSSVAEFMISKSIPIDFSSLRRLITSLGRSCLWLKARTHYKSALSLSCYPPLEGNLYRKLLRIPSYLSEVEMLLAIEIFLVSNSSSIQSPGTPTQTLQIVLKRCEENKSQSKDDYQAAVERLMKAVRLSDPKLFVKHMTVNVNKEQVYSLEHCSALKWLKENMKWAGKVWLFNKH"
     misc_feature    3526..3885
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:434113"
ORIGIN      
atgccgaaggaaaaaagaaaagttactggagcctcaagtgatgatccacagccagggactgacctggtaagaaaggaatcattaaccagttcggaatctttccaaacagtggagtgcagtgaaattcgaagtacacctctcttgcggtcttcgggtaaggaagttttggtagacggtattaaaagaagacgtcgaattaaaacacttgaaagcttagcaagtccactcttcaaaataactgaaaataaggttacacaaaatagaaaggttgaatttcaagatgaactgtacaagaatactccaaaatattcttgtaacagcgtgtcacctggagtagaaaataattccattttaaaattacatgattgcagttgtttcccccattccaaggattgtaatgatgaaaataaccttacatataaacctgatggtggatgtatccatgaatcagaaaattcctcagagttaaagaaagaaaaccttgggagtctttcagataagagtgacacaaataatattcctcaactttcaaacactgaagaaaacttaatgggagtaaataaattattgcttgaagaaactgatatataccaaagcaaaaataatggcttgcttccctgccgtcaaaatgaaaaaaataaatactcagtagaggagagcagtgttgggagaaaacccaggaaaaggatgaaggtgtctgaaaaaagagatgaaatggttatcaaaatgaacttctctaatgtgcataacaagtctgagttgctgttacaagaaaaccatacgggtgctgaaagtacagaagcaaaaactttaaaaattttgagaaaagcaaaccataatacactttctccagtagatcatttatcaagtcttccagaaacagtaggaaaaaagacaagtcctaagcatcttgtaaatactatgtttcagaaaaccctagcgccacttttgaaagaagaaaccaaaaatgcttcagaacccttaagaagtaaaagcactgagccagaaatgaaaagctcaacagtgaaatcacctagtaattgccatcctattgaaaagagatcacaggaagacttaagaaatgaagctgaagaattcaagttcacctgtcacagaacaataccaatgacgggtaaaagaacttggccgtgttattcatgtgctagagtaactgcctattgttggaaaaagtcttccttgccagaatcaaataactctcttcctgggtctggggaaagtgttaggcaagatgatttccttaaacatcaaccaaatcagactcacttaattgactccaaattaccattacaaagttccataaaagaaacaaatagtgaatcttcaagtaaagaaaaattggattctaatataaattgtctgtctgcgatctctgaagtagtctctgctataaaacctactttaatggttataaatgaacctgtaatcgatgatgaaaagatgaagtatgaggaaccgagcagaagtgggttagaggtagtttctaatgcaactgaagatactcggttaactaatgtgactcaaaacttaacaggaaataaaagaaaagagagagggactttaacaaaacttaatttgacactggcttcccagcatggccaggaagctaacaactctacaggcaaaactattcaccgaaaaacatgtgttgctaagccaacagttgtggttccagactttgttaaaatactgaacacaggacggctgactaattttaaaattcctctacttaaaaataaaacagaaaaaagcaaagaaataaatgccaagtcatcagagagagaagcatatagtcccctagagcttcttgacaatatatctggaacagagataagacagaataggaataaagaaaacatctccacagtaatttcaggacttcaatctttgaacatacaaaatagtgtcgctccagtgcaatctagttctgacttatactgcaataagaatttccatagaatttcttcaagtttcttaaagcaaggtaataataaaccatctaactgtatctctgaaccaggcaatgtcgtttctaataagaaagctgtttctctcacagttgaaaagaatacctttttctgtgatcctgggtgtatagagaaaagtcctgccttctgctctgatgaacaagaaacattcaaacaagtttcctctgaagttagtggtagaaaaacaactaagaacttttcagacattaaaattattccagatattcttaaagcatatgaagatgatgtcctcttaattgatgtaattcaagatgacccagacctctttggagtctccaatgaaggggagctctcatttacttcagaggtccccatggtaaaccaggagcccaatgttgctgaagagcagcaatcaacagactccaagcacgtggaacttcctgaaaaaaaagaaccaagtgataacttgagagaatttcctgtactggatcctggattgaagtcagagatctgtacttccttgccagcagcaagtgagaaaaaatatgattttaaagatgcaaacatttccttaggagaagttacgaataggacctctcaaaatgaaaaactgggagactgcaatgaacacataaaaagttcagacttggatgaaaagtgtaaattttcagacaaagtgactattaaggaagaaaaagaaaatatgcatgaagtttgcaaaagcaaagattctaaaaatgcagagattatggttagtgaatgtcagttagcaacactgggcccaaaacctctgtgcttatcgctgccacctttgaatctaagtgcttttcaagaagacacactaaagccatggatgaatgatttcagattttcaggacaacattgtgtcctaaagttgcagaaccctgaaacctgtgaaatatttaacagggaaaaggttgtaagggtgtttcagaagtccctagggttgatgataccccatagatattgcaaatttcattttaacacgttacgtggctgtgagcgatcacagtgtaagtttgctcacgtgcctgagcaaggggatgaaaaggtttgcatggatgtgcttaaaaaatatataagcatcaacgagctgtgtttgctacaacgtgcagtaaacatgtttacagagtactacagaaagtttcctcctggtatacactttgatttacaagtgctaaatgacctcttgaattctttactcaagcattgcttattgaaagaagtatttcaggtactgaacctcagcataatggttaacacgctgcctgctctgaaaatattactagaaatatttgagtatgtggcaactatgaaattaaggagtgctgtacctgctttaattggtatcttttgcaagcttgttgaagctgggctgttgcttgacccagaacactttagctatattgttaaactcttacaccaagtacaagctcccaaacaagaaataactgcggttctagaaatgaaatccaggttacaaatgaggcaatttaaaaagaactggacctgtgatttagatttagccttgaatgaaataaagcattgtaaggaaaatggtgactggaccaaattgggaaatttatacctgaaggtaaaaatggactgtgaaaaatttgtagatttccagagattttgtacttgtgttgctgaaacactaacaaaaggctataaagaagaaagaccaagtgttccattttgtgaatttgctcaaacagtgagcaaagatccgcaaaatagtgaagtagataaaactttgctgggaagaatcggaatcagtgctatatacttctatcacaagctgttgcagtggtccaagtcagaatggataatcgatacaccacaatggccttgtgatagactggatatactcaatcgacacaatctgctctgtacaattgcacatgaaatcttagccaagagcctttacagagagacatttgaagttttgcaaaatctaccaggttttcaaaattctcaagaagttgtggaggtctcacagtatagccctctttttaataaacttctggatgcctgtgtagaaagcaatagtcttggtatttcatcctccgtagcagaattcatgatttcaaagagtatccctattgatttttcctctcttagaagattaattacttctttaggaaggagttgtttatggctcaaagccagaacccactacaaaagtgctctttcattgagttgctatccaccattagagggaaatttataccgaaaacttctacggattccttcttatttatctgaggttgaaatgcttttagctattgaaatcttcctggtatcgaattctagtagtattcagagtcctggtactcctacccagacgctgcagatagttttgaaaagatgtgaagaaaacaagtctcagagcaaggatgattatcaagctgcagtggaaagattaatgaaggctgttcgtttatcagacccaaagcttttcgttaagcacatgaccgtcaatgttaataaggagcaggtttatagtttggaacattgttctgccctgaaatggttgaaagagaacatgaagtgggctggaaaggtttggcttttcaataaacattag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]