2024-03-29 16:48:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006212690 10619 bp mRNA linear MAM 22-NOV-2019 DEFINITION PREDICTED: Vicugna pacos argonaute RISC component 1 (AGO1), transcript variant X2, mRNA. ACCESSION XM_006212690 VERSION XM_006212690.3 DBLINK BioProject: PRJNA221631 KEYWORDS RefSeq. SOURCE Vicugna pacos (alpaca) ORGANISM Vicugna pacos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021964181.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Nov 22, 2019 this sequence version replaced XM_006212690.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Vicugna pacos Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10619 /organism="Vicugna pacos" /mol_type="mRNA" /isolate="Carlotta (AHFN-0088)" /db_xref="taxon:30538" /chromosome="13" /map="unlocalized" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..10619 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns" /db_xref="GeneID:102541909" CDS 2357..4705 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_006212752.1" /db_xref="GeneID:102541909" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 2399..2623 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 2651..2803 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 2804..3166 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(2960..2962,3005..3007,3047..3049,3059..3061, 3113..3115,3134..3136,3140..3142) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 3299..4576 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(3710..3712,3722..3724,3758..3769,3776..3778, 3800..3802,3809..3811,3821..3823,3833..3835) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(3914..3916,3920..3922,4130..4132,4544..4546) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
gaggttccctcttacttctgccttccctagtttgggggtgaaagggagggtgggggctctctcccctgttttcccaaagcctccttggagtggagggtgcctaaggctaagtctggtgtatagtcctattttgggggaagagaaggctttgaggctagagtgtctgtcccatcccccatcatttctactgagctctaggggatgtctttctcccaagactccaaacaattattctgcctgggaggctaaggagatgaatggaatgtaagaacttggggaggggaaggttgtctcttatcagctacatccttttagggtcatgtttgtcctgttcagggtttataattgttcctgctgtttttaggtgttcatgtgtttgtgtgttgtgtatgtatgtgtgttctttgtagtgtgtctatggatctatttgttcattcatttagtatctgtatagtgaacacctcctgtatgccaggcactggagattcagcactgaccaaggcagatacagtctgaatctttgaagaactcacagtctagggtggtaaggcgtgtgtgtataaagataaactgttaaggtctaagcgtgtgtttagatgtgtatagaatagagaaatgtgtccttctgtgtgtgtatatctgtctatggcttgtgtacaatttctgtccagctctttctggaataggtagccatgctagtggttaagctttcacttccccagatggctgcattctgaaggccttttccccccaggctgggcctccatttccctgtctgcagagtggggtaggcttgacaggtggttagaaggagacacagcagcttaactctgggaagcatgcccctcccttaaatggttctgacctcttcctgaccccccaactaaggatatgtcccatccccccagcttggcagacagtgaaagcagatctctggtgttaggaggttctgggctggtttatccctctctcttcccacctgggctggtcccctaccggcaagaacaatagtagatgtggagaaagaattctcttaggcagtttcccttttttctccctttcccctctagctagaaaataaaactaggggcagcaatcaggctggtggcaagagaggagaaagtagtgggagctggcgcttccctagtcctttcccaaaggcttcctctctcttaaatttgatcccttcttctgtctgggcactgtgtagaaggagctgtggactgtggagagaatcttgtgttctccttcccagagccagtcatctcttccttctccagccatcatgctaatggctgcccctccatcccaagtcctttcctgtagcttactcttgcctcagtctcctatatttagcctgtcttcattccctagctttttcttcttttgaactttttcctcattgtctccccacttgcaaccttgcttcttgcctggggccccagctctaacctgtcttgccccagcccctaacttcagcctttcttcttcccaattcaagtgtttttctgctgtgacctctagtttcagcttcttcaccagcttcccgcttcagcctctctccttcccttagtctccaaactctgtccttttagtcttttctccttttctttttctccaacatcagccattcagttgccttaatcctttctcaaacactgcccccatccttcttgccccccacccccattggccttctttggatcttcctcctacctgcggtgcagaggagcattaagatgatgctatttcatgttcagggtggtgatgagtgaagtgagcatcaggctgacagataatagggctttcttggtttgctagatagctgttggaggcagatgtcttaatctagtagaagaaagagtttttagttactggagccagatttagccccctacttaacatgtaataggaagttattatgtattcacttggtgaatttaagatagataacaggggtaattttcctactggaaagtttttaaaaaatgagcctagattgtctgagccagtagaagccctcagttggactgggtaggcaagaaagagacttcccctatagtctgctgctcctgttctaggaggccttgaccttctctgattagagtggtaagaatatacaagattctaccctcaccagcctctctgtcttatagctgcaggcgcctacctgccccctctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagctcctggccaattactttgaggtggacatccctaagattgacgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttacactgtcacagcattgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtttccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccttggtcagtggccaaatccctgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccaccgccttctacaaggcgcagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcctaagcctctcacggactctcagcgtgtgcgcttcaccaaggagatcaagggcctaaaggtggaagtgacccactgtggacagatgaagaggaaatatcgcgtgtgtaatgttactcgccgccctgccagccatcagacgtttcccttgcagctggagagtggacagactgtggaatgtacagtggcacagtatttcaagcagaaatacaaccttcagctcaagtatccccacctgccctgcctgcaggttggccaggaacaaaagcatacctacctgcctctagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagatcagccgtctgatgaagaatgctagctacaacctagatccctacatccaggaatttgggatcaaggtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcaccgaccagctgcggaagatttccaaggatgcaggaatgcctatccagggccaaccttgcttctgcaaatacgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactgttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcacctcagactctgtccaacctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcggatgttacacaccccccggcaggggatgggaaaaagccttcgatcacagcagtggtaggcagtatggatgcccatcccagccgttactgtgctactgtgcgagtgcagcgaccacggcaggagatcattgaagacttatcctacatggtacgtgagctgcttatccagttctacaagtccacccgcttcaagcctacccgcatcattttctaccgagatggtgttcctgaaggccagctcccccagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggttcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttacgtgcgatgcacacgctccgtctcaatcccagcacctgcctactatgctcgcttggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagaagggagccacatatcggggcagagcaatgggcgggatccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgctgcccaaatccagaggaagcagggaggagggaggtggggtaggaagaaatgcagaaggccttgtttccttctacagagtggatgaaagagtggggaacagggccagtaagccagaccaccagccagaaatctctgatattcacctcatgtcctccacccctcaccccatcttgtcacatctggccctgaccccactggaccaagacgggcagcatcggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccctgcggacaaaagctggtaggtttgggtttgatactttagatgggaaagtgaggggcttgagaaagtgggtgggaggagggaagaatattttaggagccttaatcagaaaaggtctagatttgtttaagaagaaaaacgaaaccagacccagatcaatattttaggatactagatgttttaattggttgataatccagtttgtaggaagatttttaatgctaatggttttggttgctcctcccccagctgtcactcccctttccctattcctctctttccaccttttctaccccgccttacacctcctccctgtcagacaaccagcccctagtaagacttaaggcactatggcacttagctccgaagtgacatgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtaccttttgggtgggggacggggaggggtgggagaggaggtaggtggggatgaaatacccctaacccaacaagcctccagccagagcgccagctattttgcatttgaaggaattgacttccatattcattgagctttttaaaagatcatgacctcaagatggttaaaatccattgacatttgcactttcagacctgacaagtctcagagctgctgagatgactggcccctggcctttccacttatgtctcctttcttcctgtctcccattcctgggtctggagttactttcatagcatttctcactcttggtttctttttttccctgatggtcaagtctctttacgtttcaatatttcttaactggggtgtcttataacaaacgatccttaggtctaaaataagaaaaaagcaaaaactaaatgttatttttataccataacttgagtctattgccaaaatctggaaatccctcccatgcccaatgagtttacatcccagaaacattgagccatcagaaggaactatatacctgacttgttctttggcctggctagttagggggtggttatctccccagggtggggctcaggctccacccttcctctgtgcagataatatctttttcttgctacaggctccctcttctgcactgccctgcactctttcctgcaaatgcatcttcccttcctctggactgttttctgacactttggctcatcccagatttcagcgtgtcctgtggataggctggggattttgctgctccctattgcttctgtttacacaaatgaatttttcctggtttcccactagggcatgtgagtgggtagcatgggcttttttttttttttttttttttccatctccctgggtagagatggggtttggctgtcttgcagaactggaaaagtagggggttctagcttggtgcctgtgaccttgaagcaaggctccctctttccttgactgttcatttttttcctgtcccactgtttgggatgcggagttcagcttcagtgtggaaattcctctttttgaggaacctgggcttggatttgccctaatctggtgatgaagccatgacactttagacctagcttgtgctcagaggccagccagaggaaggtcggtctgaatacgggcctgtgcagttagagctaccatttcccctccccagcagcccttgtacagacccagatttgctatgcaaaacagtctatcccaggttcttttctggttggctacttcattcagcaacttcacaaaacgtagcacaaacattgattatggagaaggcatcaggactgttgagtaactcctcctttacttcttttgtactggtatgggatgccccatgggcacagcccagctgaagaacagaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatacactgtctacttcgtgttcagtcaccctttggggaggggagctctcttgggacagtgggctctgcatgttctcttcttgggtgtgttttggggctgggatcagggcagcattcctggaggatccagtcattcaccagcatttgcaaatatccattgggagctggtggtagccacctactctcagcaacgagtttgtgttctctcttttttctctctttgcctcactctctccagttgggttttgaactggggcttgaaatgtgtattttagccctttggcattgtatatgccatttaggaaataaaagcaagaaaaacagcttgggcaatggcaagaaaatgacttcttgctgtgattttctttcttttcttttcttcttttttttaatctttgaaacttgaaaaatgaccttgaggattattcttgtttgaaaggtggtgcatgcagattgagcagtggtgttggcagcaagctttggctttctgggatttggttaaagtggtgcttcttacttaagctttgaggaattgctggggggaccccagcctcatcctcttaaacaggtctcttctccctttctttcacttttttgccttccttttccccttctctcttcctctgatctcttttaattttttattttatttattttttgttgttgttcactcagcttgctggctggcctgtctgcctatgtgataatgaattctctgcatggctacaatgatcccaccgttagctggcaaggtcaggcttagctccttggctgtaggagaccaagaatctgtttcccaggcccagtgatgtccaccctgggctgtactgccctccaacttacatgagggcattagcagaaggcctgtccaactagcatgataccaggagggcttctggcaacttccacacttgtccactctttggagttggtttctctcattgctttttctagatctggtttcatttctctcttcttggggcctcccttttctgaggatgtcctagagttgagctacttggtcatccggagttggagggttaggagatggacataggggaagaagagagtgataggaagaaaatggagagagtgtggcttaaatgtgggaaaggagggcattgatcttattgatcacttttccagtctagcctgactcattgggggttgaggtgctactgctagccactggggataatcctggggctgttgttcctgcgaacttaggcttagaataatgctgaagaagaaggtacctaaaagtatgacacctcccttaaaagttccggttctttcctattcagtagatcctctctggcctcctctttggctaagcaatgatgttgttggatagttttctttttcttgtccagaattctgtaaatgaggctagcaagatggacagccacggagacactttgacttcttagctggcccaggggatatctgcaaggctgactggacaatgtttttagacttggcatcatgtgtaataaagaaggatgaaagttccttccccttcagggtagaaagtcatctcaaactaactaaaatgttgttttggaaactacattggggaagttatttttatttatatttactgggcctaggccaatccaggatggtagctgggatgccttccttcttaaagtctgatcatggcagggttttgcagggcactgtttcctctttggccttctaagcagactggggagaagggattctctggttttctctccctccctccccccaccatttattaggacttaccttctccctgggcagggagagaggctaggttggtgctctccccttactctactccttagaacctctagctgctgtttgggagcccaagaaaggggatggagggaatgagctcaaaagaaaagaaaagaaaacaaaacaaaaaacagaataatgtggggaaggcagatttccttctttaaaaaggaaaataggaaaccctccaaggattgtgcaagtaaagacaatgtgtcgaatgcactgagtcccctggtgtagtagcaataaggaaaaatgaaatgactttcctgtgcacacagtccagcctgattggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatctctctcaagtccagcatggatggggaaatgttccttgaaccccacagctgtgtacttgtttgcatttgtttccccttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtaaaattatcccagcagctgtaatgtacagttccttctgaagcaagcagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaagtgcggtctctctcctttttttcttagcaaagaaaattcttgggatgaattatatctctgataggttttagattagaataatagattgatataagagtagaaccatcacttactaaaaggaggacagtgggtaaatcaaattccagagtgttgaaactgcagatcatatgtaatcatatttcatagggcctccacttattcttcattcaacaaacatgcaaagcactgtatcccacagtattgtggggaagtaggcaggcacaattcaaaaatgaggaaaatagctccttaaggagcttaaaaagtttggtgggggatgtgagtggtcatatggttcccaggtaccatttagagagagcgattgagggactgaacaagctgtaagtcagtagcaatgaaatagcaaagggcagacttgatagatgctcaggagatagacttatttggactcagtgaatgatggaacgggaagagagaagtagaggctaatgctcactctgcttgagcaagtaagtgtattgggacagtcctctagccaagattaggggaaaggggaggcaatagaaggaaggtggtgaattttgcgaagaaatacaattaaccttgtatagactcaacttttaggttcccaaggggcaacaaggttaaggtttccagtaaacacaatgttttggtgctcagggaagactacaaaactgcagttatagacatgggattcacattcatataaatggtagttaaagccattggagtgaacaagttggcttagaaaaagagtagagcatgagaaacctagtgtgcaactctaggaaacacagtttaagggatgaggagaggaagcaaaatggaaaatgactgtcagattactggtaaataccttgtatatttttgcttgatttaatgaggtgggagattagtcaagagagtagaataggattcaagaaaaatgttattaacatcatgacaactgattttcaccatgaaaactgaaaagagggtatttttctacgtagtttaccatcctccaccccgtctttgggatcttataactattggtcattctccaatatttcttaaaaatgaacattggaaaaacctaacttaaataacgttaagactgggacttccaagttgttcaccaccacctccacctccagcttccttctatcctcaggagatacttgtaaaagaataaaataaacaaacctaattttgttcctaa
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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