2024-04-20 11:59:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005107531 3790 bp mRNA linear INV 31-AUG-2020 DEFINITION PREDICTED: Aplysia californica protein argonaute-2 (LOC101863465), transcript variant X4, mRNA. ACCESSION XM_005107531 VERSION XM_005107531.3 DBLINK BioProject: PRJNA209509 KEYWORDS RefSeq. SOURCE Aplysia californica (California sea hare) ORGANISM Aplysia californica Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Tectipleura; Aplysiida; Aplysioidea; Aplysiidae; Aplysia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004797880.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 31, 2020 this sequence version replaced XM_005107531.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Aplysia californica Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3790 /organism="Aplysia californica" /mol_type="mRNA" /isolate="F4 #8" /db_xref="taxon:6500" /chromosome="Unknown" /sex="hermaphrodite" gene 1..3790 /gene="LOC101863465" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns" /db_xref="GeneID:101863465" CDS 127..2907 /gene="LOC101863465" /codon_start=1 /product="protein argonaute-2 isoform X4" /protein_id="XP_005107588.1" /db_xref="GeneID:101863465" /translation="
MFPMQPGPGGYGQPPTGQGMPSFLGAHLGNGQPGLHFPFPGMQAQDVPPPPVTTPITPSLTQTEQPPPLPFAQGQVPQESLVPPVQQADFVSPPRPNTGTEGRSISLRANHFQVRVPKGIIHHYEVNISPDKCPRRVNREIIDTMVTAYQQKIFQGQKPVFDGRKNLYSREPLPVGTEKVELEVTLPGEGRDRVFKVAVRYVGQVSLFALEEALEGRTRQIPMDAIQALDVVMRHLPSKTYTPVGRSFFSPPEGYDHPLGGGREVWFGFHQSVRPSHWKMMLNIDVSATAFYKEQPVIEFMCEVLDLPDISEQKRPLADSQRVKFTKEIKGLKVEITHCGTMRRKYRVCNVTRRPAQTQSFPLQLNTGQTIECTVARYFMEKYKMKLQHPHLPCLQVGQEQKHTYLPLEVCNIVGGQRCIKKLTDMQTSTMIKATARSAPDREKEINNLIRKANFNADPYLQTFGISINTQMMDVQGRVLTAPKLQYGGRTKAQAIPNQGVWDMRGKQFYQGIEIRVWAIACFAPQRTVREDALRNFTQQLQRISNDAGMPIMGQPCFCKYASGPDQVEPMFRYLKNTYQGLQLIVVVLPGKTPVYAEVKRVGDICFGLATQCAQAKNVNKTTPQLLSNLCLKINVKLGGVNSILLPSIRPHVFREPIIFLGADVTHPPAGDTLKPSIAAVVGSMDAHPSRYSATVRVQEHRQEIIRDLATMVKDLLIQFYRSTSFKPTRIIFYRDGVSEGQFQTVLGHELRAVREACMKLEVEYQPGITFIVVQKRHHTRLFCADRRDQTGRSGNIPAGTTVDQGITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFNADELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSRHSDNSEDRNPLYLARAVTVHQDTYRVMYFA"
misc_feature 433..825 /gene="LOC101863465" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 853..1005 /gene="LOC101863465" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1006..1368 /gene="LOC101863465" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1162..1164,1207..1209,1249..1251,1261..1263, 1315..1317,1336..1338,1342..1344) /gene="LOC101863465" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1501..2778 /gene="LOC101863465" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1912..1914,1924..1926,1960..1971,1978..1980, 2002..2004,2011..2013,2023..2025,2035..2037) /gene="LOC101863465" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2116..2118,2122..2124,2332..2334,2746..2748) /gene="LOC101863465" /note="active site" /db_xref="CDD:240015" ORIGIN
cagagaggaagtagccaaagacatgaatcaaaatggcgtaaggctccagttggataccctttgtcattgatagcgaacgtttaattccaattttctgtgatttcggtgaccaggaaaccaatttcaatgtttcctatgcaaccagggcctggcggctatggccagcctccgacaggccaaggcatgccctcattcttgggagctcacttaggaaatggccaaccaggtcttcattttccatttcctgggatgcaagctcaggatgtcccacccccacccgtgaccacgcccatcacgccctccctcacacagacagagcagcccccgccccttcccttcgcccagggccaggtcccccaggagtcgctggtgccgccagtgcagcaggccgactttgtgtccccgccacggcccaacacgggcaccgagggccgctccatctcgctgcgggccaaccacttccaggtgcgcgtgcccaagggcatcatccaccactacgaggtgaacatctcccccgacaagtgcccgcgcagggtcaacagagaaatcatcgacacaatggtaactgcttaccaacagaagatcttccagggccagaagcctgtctttgacggaaggaaaaacttgtacagtagggaacctcttccagtgggaacagaaaaggttgaactggaagtgacattgccaggggagggtcgggacagggtgttcaaagttgccgtccgctatgtgggtcaggtcagcctgttcgctctagaggaggcgctggaaggtcgtacccgacagatccccatggacgctatacaggccctagacgtagtcatgaggcaccttccaagcaaaacctatactcctgtgggccgctccttcttctcaccaccagagggttatgatcacccgcttggaggtgggcgagaggtatggtttggtttccatcagtctgtgcgaccatcccactggaaaatgatgctgaacatcgatgtgtctgccactgccttctacaaagaacaaccagttattgagtttatgtgtgaagtgctggatttgccagatatcagcgaacagaagcggcctctggcagattcacaacgagtcaaatttacgaaagaaatcaaaggtcttaaagtggaaatcacccactgtggtacgatgaggcgcaagtacagagtatgcaacgtcacaagacgacctgctcaaacgcaatcattccccttacaactaaacactggtcaaacaattgaatgcaccgtggctcgctacttcatggaaaagtacaaaatgaaattacaacatccacatttgccttgtcttcaagtggggcaggaacaaaaacacacatatctgcctctcgaggtgtgtaacatagtgggaggccagcgctgcatcaagaagctgactgacatgcagacatccaccatgatcaaggccacagcgaggtcagctccagacagagagaaagaaatcaacaatttgatccgtaaggccaacttcaatgctgacccctatctccaaaccttcggcatcagtatcaacacacaaatgatggatgttcagggtcgtgtgttaacggctcctaagttgcaatacggtggacggaccaaagcccaagccattcccaaccaaggtgtgtgggatatgagaggcaaacagttctaccagggaatcgagatccgggtgtgggccatcgcctgcttcgccccgcagagaactgtcagggaagatgccttgaggaacttcacgcagcagctccagcgtatctccaacgacgccggcatgcccatcatgggccagccctgtttctgcaagtacgcctcggggccggaccaggtggagcccatgttccgctacctcaagaacacctaccagggcctgcagctcatcgtggtggtgctgccgggcaagacgccagtctatgccgaagtgaaacgtgtgggcgacatctgttttggtcttgccacgcagtgtgcccaggccaagaacgtgaacaaaaccactccccagctcctgtccaatctctgccttaagatcaacgtgaagctgggaggtgtgaatagcatcctgctgcccagtatcaggcctcatgtgtttagagagcccatcatattccttggtgccgatgtgacccacccacctgcaggcgacacactcaagccttccattgctgccgtggtaggtagtatggacgctcaccccagtcgctactcggcaacggttcgggtccaagagcaccggcaggagatcattcgtgacctggccaccatggttaaggatctgctcattcagttctatcgctccactagcttcaagcccacccgcatcatcttctaccgtgacggggtcagtgagggacagttccagacggtactgggacacgaactccgcgcagtccgtgaagcctgtatgaagctggaggtggagtaccagccgggcatcaccttcatcgtggtccagaagcgccaccacacgcggctgttctgcgccgaccgcagggaccagacgggccgcagcggcaacattcccgccggcaccacagtagaccagggcatcacgcaccccaccgagtttgatttctacctgtgctcacatgctggtatacagggcaccagccggccttcgcactaccacgtgctgtgggatgacaaccgcttcaacgcggatgagctccagatcctgacgtaccagctgtgccacacctacgtgcgctgtacgcgctcagtctccatccccgccccggcctattacgcccacctggtggccttccgggcgcgctaccacctggtggagaaggagcacgacagcggcgaaggctcccgccactcggacaacagcgaggaccgcaaccccttgtacctggccagggcggtcaccgtgcaccaggatacctatcgcgtcatgtactttgcctagttggaaactttgaacattgctgctttggacagttcagactttggaagaaagtgcatccccccagggataaagacttgtgggagtagctgttgacatttgtgaaaatgaagggaagcgaatgagtatggatgtcatcgtctcaccgaagtggacatcattgaacagactgatgtcttgtgtccaaatgactacttcacttggatgtgtttttagagagacactctgtggttggtttagccgaagaatgacaaaatctgcttatgttttgattttggaatgtatttttgtgaagcagtttttgtttgtaagacatttgattttctcttcttttggtccagccagtttctagacacctagtggaatgatacagatcaagggtaaaatggtacacaacgaagtggctggcataaagtgtgagaaagactgtcttttatgattgctgtagctgatgctgtaacgttgtacacgtctgtgtttagtgtctagctgggctccgtttaggaggtgcaattgtccctcaccgaaatcaaacttccaactgcatcagcataaggaagatctgggggaaaggacaagaaagggcagctgtgttttagaaaaaggactacctgagtgagggggaaataataaggcatcactctgttcctgtggaaaactagtcgtacattttatcactatttgtcttttgtactcaccaaaacaaaacttgagacatgttgatcattgatatttactttttttttttaccctttctttttttttctttttcattgtggttgaatgttttatgatgtgaacacattgctatgcatttgtaccacatctcatccaactgtatttttgcttcagtttaaaacaaaaataaaagccttgttgtagctga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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