2024-04-25 21:10:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005068411 3667 bp mRNA linear ROD 14-APR-2021 DEFINITION PREDICTED: Mesocricetus auratus NRDE-2, necessary for RNA interference, domain containing (Nrde2), mRNA. ACCESSION XM_005068411 VERSION XM_005068411.4 DBLINK BioProject: PRJNA719779 KEYWORDS RefSeq. SOURCE Mesocricetus auratus (golden hamster) ORGANISM Mesocricetus auratus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024429186.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 14, 2021 this sequence version replaced XM_005068411.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mesocricetus auratus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3667 /organism="Mesocricetus auratus" /mol_type="mRNA" /isolate="SY011" /db_xref="taxon:10036" /chromosome="Unknown" /sex="female" /tissue_type="liver" /dev_stage="adult" gene 1..3667 /gene="Nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns" /db_xref="GeneID:101829418" CDS 74..3562 /gene="Nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_005068468.1" /db_xref="GeneID:101829418" /translation="
MALFPAFAGLSEASGGGASRKELDWLSNPSFCVGSLTALSQQAEEVTALASGGSPLTRSPLKSELSDESDTSQTLTQISRRKKKEKKKKRKHQHRKKTKRRHEQSSSGGSESDTDSGKGRSSRSLKDSQKESEKPSQGSNAVAAGHQSIWLEDIQTPTEVFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTPAAKKHSRKHLERYFTKKNVGLMRTEGIAVCASTEPPSSEPITFIPVKDSADAATPVATWLNPLGIYDQSTTQWLQGQGPPEQESKQPDSQQDRESAALKAKVEEFNRKVRENPRDTQLWMAFVAFQDEVMRSPGLYALEEGEQEKHRKSLKLLLEKKLAVLERAIESNPSSVDLKLAKLQLCAEFWEPSALAKEWQKLLFLHPNNTDLWQRYLSFCQSQFGTFSVSKLHNLYGKCLSTLSAVKDGSILSHPVLPGTEEAMFALFLQQCHFLRQAGHSEKVISLFQAMVDFTFFKPDSVKELPTKAQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWVLVNPDEDEEEPEEDDQEIKDKTLPRWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLCSPSLQFQLIEAFLQFLGVPSGFLPPASCLYLAMDESSIFDSELYDAKPLTYFNPSFSGISCVGYMEQLGCPRWTKGHSREGEEFVRNVFHLVLPLFSGKQKSQLCLSWLRYEVAKVIWCLHTKKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDARKVFDTALSMAGSSELKDRELCELSLLYAELEMELSPDSRGATTGRAVHVLTRLTESSPYGPYTGQVMATQVLKARKAYEHALQDCLGQTCASGPDTAESLDCLGSLVRCFMLFQYLTVGIDAAVHIYGQVFAKLKGSVLPEGPGPKDSASSQSVNSVLEAVTLMHTSLLRFHMNTSVYPLAPLRETLAEALRLYPGNQVLWRAYVQIQNKSHSANKTRRFLDGVATSAKHLEPRLFAIEAEKMRKGLVESVQRVGGREVHATIPETGLTHRIRALFENAIRSDKGSQCPLLWRMYLKFLVSLGNKERSKGVFYKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED"
misc_feature 554..841 /gene="Nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(554..577,584..589,599..604,608..610,614..658, 665..673,677..685,707..715,725..730,734..739,746..766, 791..802,812..841) /gene="Nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1007..2005 /gene="Nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gacagagtcctccaaccagaactctccagacggcgccatttctgtggagggagtggcggtgcggcctgtgaacatggcgctgttcccggcctttgcgggcttaagtgaagcctccggcggtggagcatccaggaaagaattagactggctgagcaacccaagcttttgtgttggaagtctaacggctctgagccaacaagctgaagaggtcacagcccttgcttctggagggtcaccactgacaaggagtcctctgaagtcagagctctcagatgagagtgatactagccagacactcacacagataagcagaagaaagaagaaagagaaaaagaagaaaaggaaacatcagcaccgcaagaaaactaagaggagacacgagcagtcgagcagtggcgggtctgagtcagacacagattctgggaagggcaggtcttccagaagcctcaaggacagtcagaaggaatctgagaaacccagtcaaggaagtaatgctgttgctgctggacaccagtccatttggctggaagacattcagactccgacagaagtcttcaggacagacaagaagccagatcctgccaactgggagtataaatctctctaccgaggggatattgcaaggtataaaaggaaaggagactcctgcctgggcattaaccctaagaaacagtgtatatcctgggaagggactcctgcggctaagaagcattcacgcaagcacctggagcgctattttaccaagaagaacgtgggattaatgcgcactgaggggattgccgtgtgcgctagcactgagcctccctcttctgagccaatcacatttatcccagtgaaggactctgctgatgcagctactcctgttgcaacgtggctgaatcctctggggatttacgatcagtcaactacacagtggttacaaggacagggtcctccagagcaagaatcaaagcagccagactcacagcaggacagggagagtgctgctcttaaagccaaggtggaggagttcaacagaaaggtgcgggagaatccccgggatactcagctgtggatggcctttgtagcgttccaggacgaagtcatgaggagtcctggcctgtatgcccttgaggaaggagagcaggagaagcacaggaagtccctgaagctcctcctggagaagaagctagccgtgctggagcgggccatcgagagcaacccgagcagcgtggacctgaagctcgccaagctgcagctgtgcgcggagttctgggagcccagcgcgctggccaaggagtggcagaagctcctctttctgcaccccaacaacacggacctgtggcagcgctacctctccttttgccagagtcagtttggcaccttttctgtgtccaaactccacaatctctatggcaagtgcttgagtaccctgtctgctgttaaggacggcagcatcttgtcccaccctgtgctgccgggcacggaggaggccatgtttgccctttttcttcagcagtgtcactttctacggcaggccggccactcggagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtgaaagagctgcctaccaaagcacaggtggaattctttgaacccttctgggacagcggagagcctcgtgttggggagaagggagcccgaggctggcgggcatggatgcaccagcaggagcgtggcggttgggtgctcgtcaacccagatgaggatgaggaggagccagaagaggatgaccaggagataaaagataagactctgcccaggtggcagatctggcttgctgttgaacgttctcgagaccagaggcactggcggccctggcgcccagataagaccaagaagcaaacagaggaagattgtgaggaccccgagagacaggtgctgtttgatgatattggacagtctctgatcagactttgcagcccgagtcttcagttccagctcattgaggcctttctgcagttcttgggcgtgccttccggattccttcctccagcctcctgcctgtacctggccatggacgagagcagcatctttgacagtgagctttatgatgcaaagcccttgacttacttcaacccttccttctcgggcattagctgtgttggctacatggaacagctgggctgtcctcgctggaccaaaggtcacagccgagagggcgaggagtttgtccgcaacgtcttccacctcgtgctgcctctgttctcaggcaaacagaagtctcagctctgcctctcctggttgcggtacgaggttgccaaggtcatttggtgtctacacaccaaaaagaagcgattaaaatctcagggaaagaactgcaaaaaactagccaagaatctactcaaagagccagaaaaccgcaacaacttttgcctctggaagcagtatgcacacctggagtggttgcttggcaacatagaggatgccagaaaagtgttcgatacagcactcagcatggcaggcagcagtgagctgaaggaccgtgaactctgtgaactcagtctgctttatgccgagctggagatggaactgtcgccggactcgagaggtgccaccacaggccgagctgtccatgtgttaactcgactgactgagagcagcccctatggtccctacactgggcaggtcatggccacacaggttctgaaggcccgaaaggcttatgaacacgcgctgcaggactgtctgggacagacttgtgcctctggccccgatactgcagagtccttggactgcctgggtagcttggtcagatgcttcatgcttttccagtatttgactgtagggatcgatgctgctgtgcacatctatggacaggtgtttgccaagctgaagggctctgttcttccagaaggccctgggcccaaggacagtgccagctcccagagtgtgaacagtgttctggaagctgtcaccctgatgcatacaagtctgctgcgattccacatgaacactagtgtgtaccctctggctcccctccgagagacgctggcagaggccctaaggctgtatccaggcaatcaggttctctggagggcgtatgtacagattcagaataagtcccacagtgctaacaagaccaggaggttcttggatggagtcgccacgtctgctaaacacctggagcctcgattgtttgcaatcgaagctgagaagatgaggaaaggactggtggagtctgttcagagggtaggtggtagagaggttcatgccaccatcccggagacaggcctcacgcatcggatcagggccttgtttgaaaatgcaattcggagcgacaagggcagccagtgccccctactgtggaggatgtatttgaaatttttggtttccttaggaaacaaggagagaagcaaaggtgtgttctacaaggcactccagagctgtccttgggcaaaggtgctgtacatggatgccatggagtacttcccagacgagttgcaagagatcctggatgtgatgactgagaaggagcttcgtgtacgcctgcccctggaggagctggaactactgctggaggactagggggctcaggagagccgcagccggacttactgttttacatattatatatgtaaccaactatatgtatagatggagtcatgccagtgataaaccttttgtggttga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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