LOCUS       XM_005041120            6349 bp    mRNA    linear   VRT 20-APR-2016
DEFINITION  PREDICTED: Ficedula albicollis testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_005041120
VERSION     XM_005041120.1
DBLINK      BioProject: PRJNA208061
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Ficedula albicollis (Collared flycatcher)
  ORGANISM  Ficedula albicollis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae;
            Ficedula.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_021673.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Ficedula albicollis Annotation
                                           Release 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6349
                     /organism="Ficedula albicollis"
                     /mol_type="mRNA"
                     /isolate="OC2"
                     /db_xref="taxon:59894"
                     /chromosome="2"
                     /sex="male"
                     /country="Sweden: Oland"
                     /collection_date="2009"
     gene            1..6349
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 94% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:101819662"
     CDS             1..6240
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1"
                     /protein_id="XP_005041177.1"
                     /db_xref="GeneID:101819662"
                     /translation="

MWSDLMLMDESPKEEKTQQVVLRLHTQYVSHPDTIKQTKIDGELLKRCARRKEYGITQGDGTPNSMGEPVCSPTRLRARGESGLPTGSGSSTRGVGARIGGRGQRVKEGESGEAAREAAAFSSVERLSGASLKCSALPVPVQKEQDENRQKFPGKKIKGIQHRKSPSRSKSVGSAVSDTAECEDWQAAATAMCWEETLRGTGQSQQLFFSGTTLQSKFSAGSQRYEYFSEDLKFSGYHKSSRNSGKEGNRSCMEIKLEVPSLKREIGGTEKHGISCFPEPGGLPPKKVAWSTEVKCTDSIMMQNMQISDFRKNLGTQETVPEPKPQQEVDMPERLNGCELVGSRTLGTQKKEKRCLDKKGRRPVVKPKVHGPKEGDGSALLEQHTQCPESRKGALSMRNRNTLLSQQLQDLSGQEQPTTRRRKHCMKKEQQNSSSQKGPDDSGESAEEQLKAIEQDSGTSQAVKKVKTKQNRAEGSKEKESHYSRSFAVSTSGDTESNDFLCHTVTKEPDVQCRKRQRRSGQIRHLHSLSVTAAEKVINTSAKCDAEHCNNALNHCSGLLGATDKNPFVILEDCSYINTLVKPSGSGATNSYKLNGFFRVAHGSKDLNDRICNTGGMQNERSLVKGGLSSNEEKNENEEGCVTCCLSESSKCLRGKKWNIGRKPRKKMKITEKSADVASKCKKCELETEAAVAMSSCFAVSGLNHILSASCDHTSAFDAEKNTHEVQTVSAWRKNNTKLLAFETGFKKTPELSVLVKGENSSSVAHYAAASDSLRVLAQIHDVSDRHKNKTGGNLNKVNRKLQQFTCQRTIPMAGKKVWPIESCARTSEWFLKNRRSISEGEGISKAAFEDFSDKSSVKAVGHSAVTGNVRQLDLHTSLAEITKEITHKKIDPNIDCQASLEATESSSVGIYETWTMGNENGESPVNTDRSAVAFNHDNVQEVKATLNFTAKQKDENEGDITERNLSVTVQNGTSKQTNKNEGGVTNRNLPAKVKSDTTKQKDKNEGDMTNRNLVATVQNGATEQKDKHEGDVTNRNLPANVQNDTCTSNTNSINFSPKVSVVKQTFSDLNLIKPLTSGKFEVPLCRKKSESKKRESVHSFESKTCSPLELPESTSPGRQKTGGETFLLKSEECPLSVMSDATSPASIQTKADENDSKDFQHSGSVNLSDEVSVLPEGFSVYPHVHFDRQPEPSVPDFYDTECVLKSSFPDHSWNAVNHLVGLEIHGDRKSRGNFSQYKSQNLPDILEAYNQDVLVIDVIQDDPDLFGASNEEELAHAHCENSPVKASSTNCIKDTKVYIKPESPITSEKTYSEKSNFRCMQESGMSSDTENSCNLMLKAEDVKTHNSSRGSSPSRDVSEDFLKDGQQSKLDELLTSLDVDEKFKLADGVPDIEEENKSEAGKSSDSKCEVNSELLSGLPLNDQKVNLFSGSTEMKSWTNGYKSSARSTLLPVRNCGDFEPWKMERNAIACHSVQQILDTLNLPRKYCRYYFMTSRGCERTKCWFCHVPGHGDEKICMAILRTYISIKESGLLKRAVQIFVQYYKEVTPGVDFASEVLNGLLVSLLSNCMLQEVFQILNVIVQTKTLPAVDVLLKIFEHVASLNIRNAVPTLISTFCKLIDAGIFLELEHFDYIIKLLHQLHVSNWEMSTVLNIKSRFKERYFEKTWIFDFNLAVAEIQHCKVKRDWIKLGALYLNARTGCEHFDDLQKLFLSIAEILTKASETDKPGVPFCNFADAVMKNSHHNKADRLFIGRTGISVMYSYHKVLQWVKGSKVLDKLHDLQINFTLLKGLIGPGRSASRCQIVNKATEIFLHSGNLDGAIRVLRESEWTTDAPLWPCDKMDILNRHNLLCAIVHKYLRKSLYRQAFEVLQNLPGLQKHSDIIDASQYSCLFNKLINACFENKNLGVSSSAVDFMLSRKIAIDFVLLRGLITALGRSSLWSKARTYYKNALSLGCYPELQGNLYHKLLNIPSYLSEVEMLLTIEIFLVSNASDIQSPKTSQALQIILKRSEDAVQNNSAYHRAVERLIQAAQLSDPKLFLKHMTMNVNMEEVYSLEHSSALKWLQENMEWAEKVWLFQ"

     misc_feature    5032..5559
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:434113"
ORIGIN      

atgtggagtgacctgatgcttatggatgaatcacccaaggaagaaaagacacagcaggttgttctgaggcttcacactcagtacgtcagccaccctgacactattaagcagacaaagattgacggcgagcttctgaagcgctgtgcccgaaggaaggagtacggcatcacccagggggatggaacacctaatagcatgggcgagcccgtgtgctcacccacgcggctccgagcccggggcgagtcgggtttgcccacgggctctggcagttccacacgcggcgtcggggcgcggatcggcggacgagggcagagagtgaaggagggagagagtggggaagcggcgcgggaggctgcggccttctcgagtgtggagaggctttctggtgcttccttgaagtgttctgctcttcctgtacctgtgcagaaggagcaagatgagaacagacagaaattcccaggtaaaaaaatcaagggaatccagcacaggaaatctcccagcagaagcaagagtgtaggttcagcagtttcagacacagctgagtgtgaagattggcaagcagcagccacggcaatgtgctgggaagagactctaagagggacaggtcaaagtcaacagctgtttttctcaggaactactttgcagagtaagttctcagcagggagtcaaaggtatgaatatttctcagaagacctgaaattctcaggttaccacaagagttcaaggaactcaggaaaagaaggcaatcgatcctgtatggaaataaaattagaagtcccatccttgaaaagggaaattgggggtacagagaaacatggaatatcctgttttccagaaccaggaggtcttccacccaaaaaggtcgcatggagtactgaagtgaaatgcactgactccataatgatgcagaatatgcaaatctcagattttaggaagaatttgggcactcaggaaactgttcctgaaccaaagcctcagcaagaggttgatatgccagagaggttgaatgggtgtgaattagttggatcaagaacactagggacacagaaaaaagaaaagagatgcttggacaagaaaggcaggagaccagtggtgaaaccaaaagtacatggtcccaaagagggggatggttctgccttgctagaacagcatacacagtgtccagagtccaggaaaggagctttgagtatgaggaacagaaacacattgctgtcacagcagctgcaggatctgagtggacaagaacaaccaacaaccagaagaaggaagcattgcatgaaaaaagagcagcagaactcaagctctcagaaaggaccagacgactcaggggaaagtgcagaggaacaattgaaagcaattgagcaagactctggtacttcacaggctgtgaagaaggttaagacaaagcaaaacagagcagaaggttctaaggaaaaggaatctcactattctagatcttttgcagtttctacatcaggtgacactgaaagcaacgactttctgtgccatactgtaaccaaagagcctgatgtgcagtgtagaaaaagacaacgcagatctggtcaaatcaggcacttgcacagtttaagtgtgactgcagctgagaaagtgataaatacatctgcaaagtgtgatgctgaacattgcaataatgccctaaaccattgtagtggcttgctcggtgcaactgataagaatccatttgtgatattagaggactgtagttacattaatacattagtgaagccttcaggtagtggagctaccaacagttataaattaaatggattcttccgtgtagcccatggtagtaaagacctgaatgacagaatttgcaacactggtggaatgcaaaatgagagatcactcgtaaaaggtggtttatcatctaacgaagagaagaatgaaaatgaagaaggctgtgttacatgctgcctgagtgaaagcagtaaatgtttaaggggaaaaaagtggaatattggtagaaagcctagaaaaaagatgaaaatcacagagaagtctgcagacgtggctagtaaatgcaagaagtgtgagttagaaacagaagcagcagttgccatgtcaagttgctttgcagtttcaggactaaatcatattctctcagcttcatgtgatcatacatcagcttttgatgcagaaaaaaatactcatgaagtacaaactgtatcagcctggagaaagaataataccaaattacttgcatttgaaactggatttaagaagacacctgagctctctgtactagtaaaaggagaaaattcaagcagtgtggcacattatgcagctgcctctgatagtctgagagtattagctcagatccatgatgtttctgatcgtcacaaaaacaagacaggaggaaatttgaacaaagttaataggaagttgcagcagtttacctgtcaaagaacaatacctatggctggtaaaaaagtttggcccattgaatcttgtgccaggacttctgaatggtttcttaaaaatcgtaggtctatctcagaaggagaaggaatttcaaaggctgcttttgaggatttctctgataaaagcagtgttaaagcagtaggacatagtgcagtgactgggaatgtgagacagctggatttgcatacatcattggcagaaattacaaaagaaattacacataaaaagattgatccaaatattgactgtcaggcttcacttgaagcaacagaatcctcttctgtgggcatttatgagacttggacaatgggcaatgaaaatggggaatcaccagttaatacagatagaagtgccgtggcttttaaccatgataatgtgcaagaagttaaagcaactttgaattttacagcaaaacaaaaagatgaaaatgaaggagatataacagaaagaaacctgtctgtgacagtccagaatggcacatcaaaacagacgaataaaaatgaagggggtgtgacaaatagaaacctgcctgcaaaggtcaagagtgacacaacaaaacaaaaagataaaaatgaaggagatatgacaaatagaaacctggttgcgacagtccagaatggtgcaacagaacaaaaggataaacacgaaggagatgtgacaaacagaaacctgcctgcgaatgtccagaatgatacttgtacaagtaacacaaacagtataaacttcagccctaaagtatcagtagtgaaacagacattttctgatttaaacctaattaaaccattaacctctggaaaattcgaagttcctttatgcagaaaaaaatccgagtccaagaaacgggaatctgtccattcatttgaaagcaaaacttgtagtccactagagcttcctgaaagcactagtccaggaaggcagaagacaggtggagagacttttttgctgaaatctgaggagtgtcctctttctgtcatgagtgatgctacatctccagcttccatacagacaaaagcagatgagaatgacagtaaggacttccagcacagtggctctgtaaacctctctgatgaggtgtctgtgctccctgaaggtttctctgtgtatccacatgttcattttgatagacaaccagagccatctgtgcctgatttctacgacactgaatgtgtgctgaaatctagtttccctgatcattcttggaatgcagtcaaccaccttgttggattggaaatacatggtgatagaaaatccagagggaatttttcccaatacaaaagtcaaaatttgccagatatccttgaagcttacaaccaggatgttcttgtcattgatgtgattcaggatgaccctgacctttttggagccagtaatgaagaggagcttgcacatgcacactgtgaaaatagtccagtgaaggcatcctctacaaactgcattaaagacacaaaggtgtatattaagccggagtctcccattacctcagaaaagacatactcagaaaagagtaattttagatgcatgcaagaatctggaatgtcaagtgatactgaaaattcttgtaatttgatgttaaaagctgaagatgtgaaaactcacaactcctccagaggaagcagtccttcaagagatgttagtgaggacttccttaaagatgggcaacagagcaaactagatgaactcttgacgagtttggacgtggatgaaaagttcaaacttgcagatggagtgcctgatattgaagaagaaaacaagagtgaagctggaaaaagcagtgactctaaatgcgaagtgaacagtgaattgctatcaggattaccactgaatgaccaaaaagtaaatctcttcagtggaagtacagagatgaaatcctggacaaatggttacaaatcttcagcaagaagtactttactgccagtgaggaattgtggagattttgagccatggaagatggagagaaatgcaattgcttgtcattcagtccagcagatccttgatacacttaacttgccccgtaaatactgcagatactattttatgacttcacgtgggtgtgaaagaacaaaatgttggttctgtcacgttcctggacatggggatgaaaagatttgcatggcaattcttaggacatacatcagtatcaaagagtcaggcctcctaaaacgtgcagtccagatttttgtgcagtattacaaagaagttactcctggtgtggattttgcttctgaagtgctcaatggtcttcttgtttcattgctcagcaactgtatgttgcaggaagtatttcagatattgaatgtaattgtacaaaccaagacactgccagctgtagatgttcttctgaaaatttttgagcacgtggcttctttgaatatcagaaatgctgtgcctacattaattagtaccttctgtaagctcattgatgctggtatcttccttgagttagaacattttgactacattattaagttacttcaccaattgcatgtttccaattgggaaatgagtactgtgttgaacataaaatctagatttaaggaaaggtattttgaaaagacatggatttttgacttcaacttggcagtggctgaaattcagcattgcaaggtaaaaagagattggatcaagctgggagctttgtatcttaatgcaagaactggatgtgaacattttgatgatcttcagaaattgtttttatcgattgctgaaattctaaccaaagcttctgagacagacaaaccaggagtccctttttgcaatttcgctgatgcagtaatgaaaaattcacaccataataaagcagacagacttttcattggaaggactgggataagtgtaatgtattcgtatcacaaagtactgcagtgggtaaagggaagcaaggttttggataaactgcatgacctacagataaattttacactcttgaaaggacttataggtccagggaggtcagcatccagatgtcagattgttaataaagccacagaaatctttctgcattctggaaatttggatggagcaattcgggtattgagagagtcagagtggactacagatgcaccattgtggccctgtgataaaatggacatcctcaatcgacataatctgttgtgtgcaatagtgcacaaatacttgaggaagagtttgtacaggcaagcatttgaagttctgcagaacttaccaggtttgcagaaacattctgatattatagatgcttctcaatacagctgcctttttaacaagctgataaatgcctgttttgagaacaagaaccttggggtctcatcttctgcagtagacttcatgctttccaggaagattgcgattgattttgttttacttagaggattaatcacggctttgggaagaagttctttatggtccaaagccaggacctactacaaaaatgctttatcactgggttgttacccagagctgcagggaaatttatatcacaaacttctgaacattccctcttacctgtctgaagttgagatgctgttgaccattgaaatatttcttgtctcaaacgccagtgatattcaaagtccaaagactagtcaggctcttcaaataatactgaaaagatctgaagatgcagttcagaataacagtgcctatcacagggcagtggaaaggctgatccaggctgctcagttatctgatccaaagctttttcttaagcatatgacaatgaatgttaatatggaagaagtttacagcctggagcattcatctgctctaaaatggcttcaggaaaatatggaatgggctgagaaggtctggctgtttcaataattactaaatagttttcactgtattcagactgtgtcttactgatttacagcaaggtttcaaactcaagttgtggttttaaatactatattgatgataatgcagatagcag

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