2024-03-29 08:58:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_004635132 3589 bp mRNA linear ROD 24-JAN-2018 DEFINITION PREDICTED: Octodon degus NRDE-2, necessary for RNA interference, domain containing (Nrde2), mRNA. ACCESSION XM_004635132 VERSION XM_004635132.2 DBLINK BioProject: PRJNA193441 KEYWORDS RefSeq. SOURCE Octodon degus (degu) ORGANISM Octodon degus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004524646.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jan 24, 2018 this sequence version replaced XM_004635132.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Octodon degus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3589 /organism="Octodon degus" /mol_type="mRNA" /isolate="3935" /db_xref="taxon:10160" /chromosome="Unknown" /sex="female" gene 1..3589 /gene="Nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 mRNAs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:101593331" CDS 397..3432 /gene="Nrde2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_004635189.1" /db_xref="GeneID:101593331" /translation="
MQTLTGEIFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCVSWEGVSTAKKHSHKHIERYFTKKSVGLMNIDGAAVTSKVEPPSSEPVLFIPVKDSEDVAAPVTSWLNPLGIYDQSTTQWLQGQGPSGQESKQSDSQPDRENAVLKAKVEEFNRKVRENPRDIQLWMAFVAFQDEVMKSPGLYAIEDGEQEKRKKSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPPTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHNLYGKCLSTLSAVQDGSILSHPALPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKVQVEFFEPFWDSGEPRPGEKGARGWRAWVHQQERGGWVVVSPDEDGDEPEEEEQEMSDKTLPRWRIWLAAERSRDQRHWRPWRPDRTKKQAEDDCEDPERQVLFDDIGQSLIRLASEALRFQLIEAFLQFLGVPSGFIPPASCLYLAMDENSIFDNRLYEEKPLTFFSPSFSGVSCVGHLEQLGCPRWARGHDREGEEFIRNIFHLVMPLFSGKQKSQLCFSWLRYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNIEDSRKVFDTAVSMAGSSELKDRELCELSLLYAELEVELLQDLRGAAAGRAVHILTKLTESSSYGPYTGQVSGTQVLKARKAYEHALQDCLGENCVSGPAATDSLDCLSSLVKCFMLFQYLTVGIDAAVRIYEQLFIKLKGSVVPEGPGLEDSASSQSLTSVLEAITLMHTSLLRFHMKVTAYPLTPLREALSEALKLYPGNQVLWWSYVQIQNKSHSASKTRRFFDALTRSAKQLEPWLFAIEAERMRKRLVETVQRVDGQEINATFPETGLTHRIRALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQHCPWAKVLYLDAVEYFPDQLQEILDLMTEKELRVRLPLEELELLLED"
misc_feature 418..708 /gene="Nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(418..444,451..456,466..471,475..477,481..525, 532..540,544..552,574..582,592..597,601..606,613..633, 658..669,679..708) /gene="Nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 874..1872 /gene="Nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
ttagactggttgagcaacccaagcttttgtgttggaacgataaccgcgctgagccaagacaccaaggaggccacagcccttgtttcccaagcgtccgcactgacaaggagtcctctgaaatcagagctttccgatgaaagtgacactaacacaaagcttgtacaaacaagcagaaaaaagaagaaggagaaaaagaaaaaaaagaagcatcagcactacaagaagacaaagaggaaacatgggcagtcaggtagcagtgagtctgagcttgatactgactctggaaaggatggatcgtccagaagcatcaggagtagtcggaaggaatctgagaaagccagtcaaggaaataatgttgctgctgatgtcggacatcattccatttggcttgaggacatgcagactctgacaggagaaatcttcagaactgataagaaaccggatcctgcaaactgggaatataagtctctttaccgaggggatatagcaaggtataagaggaaaggggactcctgcctgggcattaatcctaagaaacagtgtgtatcttgggaaggcgtttccacagccaagaagcattcacacaagcacatcgaacgctattttaccaagaagagtgtgggattaatgaacatcgacggagctgctgttaccagtaaagttgagcctccgtcctccgagccagtcttgtttatcccagtgaaggactcggaagatgtggctgctccagttacaagctggctgaatcctctggggatttatgatcagtcaaccacacagtggttacaaggacagggtccttcagggcaggaatcaaagcagtcagactcccagccagatagagagaatgctgttctcaaggccaaggtggaggagtttaacaggaaggttcgggagaatcctcgggacattcagctgtggatggcatttgtggcttttcaggatgaggtcatgaagagccctggcctgtatgccattgaggatggagagcaggagaaacggaagaagtccttgaagctcatcctggagaagaagctggccattctggagcgggccattgagagcaaccagagcagcgtggacctgaagctcgccaagctgaagctctgcaccgagttctgggagcctcccaccctggtcaaagagtggcagaaactgatctttctccatcccaacaataccgccctttggcagaaataccttttattttgccagagccagtttagcaccttttccatttccaaaatccacaacctttatggaaagtgcttgagcactttgtctgcggtccaggatggcagcatcctgtcacaccctgcgctgcctggcacagaagaggccatgtttgcgctctttcttcagcagtgccattttctgcggcaggctggccactcggagaaggctgtctctttgttccaagccatggttgatttcaccttcttcaaacccgacagtgtgaaagatcttcccaccaaagtccaggtagaattctttgagcccttctgggacagtggagagccaagacctggggagaagggcgcccgtggctggcgtgcatgggtgcaccagcaggagcgcggtggctgggtggtcgtcagcccagatgaggacggtgatgagccagaagaggaggaacaggagatgagcgacaagacccttcccaggtggcggatctggcttgctgccgagcgttcccgagaccagaggcactggcggccctggcgccctgataggacgaagaagcaagctgaagacgactgtgaggaccctgagcgacaggtattgtttgacgacattggacagtcactgatcagactggccagcgaagccctccggttccagctgattgaggcctttttgcagttcttgggtgtgccctctggcttcatccctccagcctcctgcctttacctggccatggatgagaacagcatctttgataacagactttatgaggaaaagcccttgacttttttcagcccttcattttctggtgtcagctgtgttggccacctggagcagttgggctgtcctcgctgggccaggggtcacgatcgagaaggcgaggagttcatccgcaacatcttccaccttgtgatgcctttattttcaggcaagcaaaagtctcagctctgcttctcctggttacggtatgagattgcaaaggtcatttggtgtctgcacactaaaaataagaagagattaaagtcacaggggaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaataatttttgcctctggaagcagtatgcacatctggagtggttactcggcaacatagaggactccaggaaagtgttcgataccgcagtcagcatggcaggcagcagtgagctgaaggaccgcgagctctgcgagctcagtctgctctacgccgagctggaggtggagctgttgcaggacttgagaggggctgccgcgggccgggctgttcacattctcaccaaactgacggagagcagctcctatggcccctacactgggcaggtctcgggcactcaggttttgaaagctcgcaaggcctatgagcatgcgctgcaggactgtctgggtgagaactgtgtctccgggccggcggctaccgattccttggactgcctgagtagcttggttaaatgcttcatgctcttccagtatttgactgtagggatcgatgctgctgtacggatatatgagcagcttttcatcaaactaaagggctctgttgtcccagaaggccctggcctggaggacagtgccagctcccaaagtttgaccagtgtgcttgaagccatcaccctgatgcacacaagtctgctgagattccacatgaaagttactgcttatcctctcactccactgcgtgaggcgctctcggaggctttaaaactgtatccaggcaaccaggttctttggtggtcatatgtacagattcaaaataagtcccacagtgccagcaagaccagaaggttttttgatgccctcaccaggtctgccaaacagttggagccttggttgtttgcaattgaagctgagagaatgaggaaaagactggtggaaactgttcagagggtagatggccaggagatcaatgccacattccccgagaccggcttaacacatcgaatcagagccctgtttgaaaatgcaatgcggagtgacagcggcagccagtgccccttactgtggaggatgtatttgaatttcctggtttccttaggaaacaaagaaagaagcaaaggtgtgttctacaaagcacttcagcactgtccttgggcaaaggtcttatacctggatgccgtggagtactttcctgaccagctgcaggaaatcctggatctgatgaccgagaaggagctccgtgtgcgcctgcccttggaggaactggagctcctgctggaggactaggctgccagacacgtgtgcactctgtcctggtcatttccttcagcacagcttttggacgtgtacaccacacaaaaactgttgttcttagtattctgtatgtgactacgaacacagatgcggacctatggttggggatgatgaaatcttttgagattga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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