2024-04-26 17:56:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_004146242 3060 bp mRNA linear PLN 17-DEC-2019 DEFINITION PREDICTED: Cucumis sativus protein argonaute PNH1 (LOC101213206), transcript variant X2, mRNA. ACCESSION XM_004146242 VERSION XM_004146242.3 DBLINK BioProject: PRJNA182750 KEYWORDS RefSeq. SOURCE Cucumis sativus (cucumber) ORGANISM Cucumis sativus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_026655.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 17, 2019 this sequence version replaced XM_004146242.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cucumis sativus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3060 /organism="Cucumis sativus" /mol_type="mRNA" /cultivar="9930" /db_xref="taxon:3659" /chromosome="1" /tissue_type="leaf" gene 1..3060 /gene="LOC101213206" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 53 samples with support for all annotated introns" /db_xref="GeneID:101213206" CDS 163..2943 /gene="LOC101213206" /codon_start=1 /product="protein argonaute PNH1 isoform X2" /protein_id="XP_004146290.1" /db_xref="GeneID:101213206" /translation="
MPYMQMEPEDKYVIPASQMALKSHHGSNDGEKTSLWKRKGRRRAKGLPMEGLKQKELDPNLEFPSSSCKSLTFPRRPNFGQLGTKCLVKANHFLAIIPESDISHYNVKITPEVTSRKMKKNILTELVKQYRTTELGMRLPVYDGGSNLYTAGLLPFISKEFTVILANEEEGTGTPREREFKVQIKFVTLASMHQLRELLAGKQVNNPQEALTIIDIVLRELHAQRYISVGRSFYSPCIKKPQHVGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQLLNKDVYSRTLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDILQTVHENAYEADPYAKEFRISIDNKLTSVEARVLPSPWLKFHDTGKEKEHQPQVGQWNMMNKKVIDGSVIRYWACINFSRNVQESIARGFCQQLVQMCQISGMEFNPDPAIPIYSARPDQVKKALKFVYGAVYNKNEGKELDLLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRARIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDAQENAKRCCTRTTNGSCVRPLPALKERVKNVMFYC"
misc_feature 388..2940 /gene="LOC101213206" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN
ctgccatcctccagccaaaaattaactatcttcttctcttttttgttcttgtgtgtgtgattaatatatacagagcagagaaattaaaggaggagaaaattttgagttaatgaatgacttcttcactctcgttgctctagtgttggtcaagaaaaaagaaaaatgccctacatgcaaatggagccagaagataaatatgtgataccagcttctcaaatggcgttgaaatcccaccatggctcaaatgatggtgagaagactagtttatggaaaaggaaaggaaggaggagagcaaaaggacttcccatggaaggattgaagcaaaaggagctcgatccaaatctggagtttccctcttcttcttgcaaaagcttaacatttccaagaaggccaaactttggccagctggggactaaatgcttggttaaagccaaccacttcctagccataatacctgaatcagacataagccattataacgttaagataactccagaagttacttctcgtaaaatgaagaagaatatactgaccgagttggtcaaacaatatagaaccacagagctggggatgcgtctgccggtttatgatggaggaagtaacctgtacacagctggattgctgcctttcatatcaaaagagttcactgtcattttggctaatgaagaagaggggacaggcacacccagggaacgagaatttaaagtgcagattaagtttgtaactttggctagcatgcaccagttaagagaattactcgctggcaaacaagttaataaccctcaagaagctttgaccattattgacatcgtcttgagggagctccatgctcaaagatatatatcagttggacgatccttttactctccttgtattaagaagcctcagcatgttgggggtggtctgcaagcatggcgaggcttctatcaaagcatccggcctactcaaatgggattgtctctaaatattgacatgtcatccactgcattcattgaagcaatcccggtcattgattttgtcgctcaactcttaaacaaagacgtgtactctagaacattgtctgatgctgatcgtatcaaggtcaaaaaagtacttagaggtgtaaaagttgaagttacacatagaggaaacgtacgaaggaaatatcggatttcagggctaacatcacagcctacaagagagctaattttccctcttgatgagcagatgaacatgaaatctgtagttgagtacttccaagagatgtatgggtataccattcagtatacacatttgccttgccttcaagtaggaaaccagaagaaggtgaattatctacccatggaggcatgtaagatactcaaaggacagagatacacaaaaggacttaacgaaaagcaaataacttccttgttgaaggtttcatgccaaagaccctctgatcaggaaatggacattttacagactgttcatgagaatgcatatgaggcagatccatacgcaaaagaatttcgaatcagcattgacaacaagcttacatcagttgaagcacgagtccttccatctccatggctaaaatttcatgatactggaaaagaaaaggaacatcagcctcaagttggtcagtggaatatgatgaataagaaagttatagatggaagtgttataagatactgggcttgtataaatttctcacgtaacgttcaagagagcatagctcgtggtttctgtcaacagctggtccagatgtgccagatctctggcatggaatttaacccagatcctgcaattcctatatactcagcaagaccagatcaagtgaagaaggccttaaaatttgtatatggtgcggtttataacaaaaatgaagggaaagagttagatttgctgatagctattcttcctgacaacaatggctcattatatggtgatcttaaaaggatctgtgaaacagaattgggattgatatcccagtgttgtctaacaaaacatgtcttcaagaagagcagacagtacttggcgaacgtgtctcttaagatcaatgtcaagatgggtggaagaaacactgttcttttagatgctttacgggcaagaattcctctagtcagtgacataccaaccattatttttggagctgacgtcacacatccagaatctggagaggattctcttccatcaatagcagctgttgtggcttcccaagattggccagaagttacaaaatatgctggattggtatgtgcgcagccgcacagggaggaactaattcaagatttattcaaaacgtggaaggatcctcatcggggaacagttgccgggggtatgataagggagctcttgctttcatttaagaaggccactggacaaaaaccattaaggataatattctatagggatggggtcagtgagggtcagttctaccaggttctactgcacgaactcgatgccatacgcaaggcctgtgcttcactagaacccagttaccaacctccagtaacttttatcatagtccaaaagcgacaccacaccagactctttgcatccaatcacaacgataggagtagcactgacaagagtggtaacattttaccaggtactgtcgtggattcaaaaatatgtcatccaactgagttcgacttttatctatgcagtcacgcaggaatccagggaacaagtcgtcctgcacattatcacgttctttgggatgagaacaatttcagtgcggatgaaattcaatctctgactaataatctctgttacacgtatgctcggtgcacaagatcggtctcagtagtgcctccagcatactacgctcatttagcagcatacagagctcgattctacgtagaacccgacgcacaggagaatgccaaaagatgctgcactcgaaccacaaatgggtcctgtgtccggcctctgcctgcgctgaaagagagagtgaaaaatgtaatgttctattgctgacacaaataaaacaaggaaagagagaaatcggaaagcgatttgttccaaaattttatatataatctccatatatctatatcaagaaaattttgacccaagtatattcccatttttaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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