GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 16:12:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_003965633            5542 bp    mRNA    linear   VRT 05-JUL-2019
DEFINITION  PREDICTED: Takifugu rubripes argonaute RISC component 1
            (LOC101062906), transcript variant X2, mRNA.
ACCESSION   XM_003965633
VERSION     XM_003965633.3
DBLINK      BioProject: PRJNA543527
KEYWORDS    RefSeq.
SOURCE      Takifugu rubripes (Fugu rubripes)
  ORGANISM  Takifugu rubripes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea;
            Tetraodontidae; Takifugu.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_042291.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 5, 2019 this sequence version replaced XM_003965633.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Takifugu rubripes Annotation Release
                                           103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5542
                     /organism="Takifugu rubripes"
                     /mol_type="mRNA"
                     /db_xref="taxon:31033"
                     /chromosome="7"
     gene            1..5542
                     /gene="LOC101062906"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 36 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 25 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101062906"
     CDS             429..3005
                     /gene="LOC101062906"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X2"
                     /protein_id="XP_003965682.1"
                     /db_xref="GeneID:101062906"
                     /translation="
MEPGPSGAVPMGVYPPPLQQVFHAPRRPGMGTVGKPIRLLANYFEVEIPKMDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQLFGDRKPVYDGKKNIYTVLALPIGSEKVDFEVTIPGEGKDRIFKVSIRWLAKVSWRLLQETLVSGRLQVPLDSVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKTLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNANFNLDPYIQEFGIKVKDDMAEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKSERIGKSGNIPAGTTVDTSITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
     misc_feature    435..2999
                     /gene="LOC101062906"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    1599..2876
                     /gene="LOC101062906"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2010..2012,2022..2024,2058..2069,2076..2078,
                     2100..2102,2109..2111,2121..2123,2133..2135)
                     /gene="LOC101062906"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2214..2216,2220..2222,2430..2432,2844..2846)
                     /gene="LOC101062906"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
caggggtgaggggctggccttttttgttccgctggagaatcctgcttgaacggagagcaggagcacaacacaacgagcagaaatcacagcgttgcggacgatcggcgaaatcacagcgcctggacgaacagaacacccccgtgacaggaaaagtggcttcaaatcagtcggtatctctcttagttttgccgacattagcgccagtgtggcagactggcaactggcagctgtcgccgttagcctcaactcctttgcgagtctaggggttctgtaaggggcagggggcgggggtgcaccgagaaagaagaagactacatgccgagaggagggggctggaagtctgagacgcttccagcctgcaggggccggcggtttggccacagcaccctggactagttagctagtacccgcgcggctaagtgaatgggatggagccgggaccgtctggcgctgtgcccatgggggtctaccccccacccctacagcaggtgttccatgccccccgacggccaggcatgggtactgtgggcaaaccaatccggctcttggccaactactttgaggtcgaaatcccaaagatggatgtgtatcactatgaagtggacattaagcccgacaagtgtccacgcagagtcaacagggaggttgtggaatacatggtgcagcacttcaagccccagctcttcggtgacaggaagccggtgtatgatggcaagaagaacatttacacagtgctagcactccctatcgggagtgagaaggtggattttgaagtaaccatcccaggtgagggaaaggaccgaatattcaaggtgtccatccgttggctggccaaggtgtcatggcgcctgctgcaggagaccctggtcagcggccgattgcaggtcccccttgactcagttcaagccctggatgtggctatgcgccacctggcctctatgaggtacactccagtgggccgttcgttcttctccccacctgaaggatactaccacccgctgggaggtgggagggaagtctggtttgggttccaccagtctgtacgtcccgccatgtggaagatgatgctcaatattgatgtgtctgccacggccttctacaaagctcaaccagtaattgagttcatgtgtgaagttttggacattcgcaatattgacgagcagcccaagactctcactgactctcaaagggtccgttttaccaaggagattaaaggcctgaaggtggaagtgacccactgtggccaaatgaagaggaaatatcgtgtatgcaatgtcacccgacgaccagccagccaccaaacgttccccctccagcttgaaagtgggcaaactgttgaatgcacagtggcccagtacttcaagcagaagtacaacttgcagctaaaatacccccacctgccttgtctacaggtggggcaggagcagaagcacacctatctgcctctagaggtgtgtaacattgtagcaggacagcgttgcattaagaagctgactgataatcagacctctaccatgataaaagccacagctcgctctgcaccagacaggcaggaggagatcagcaggctgatgaagaatgcaaacttcaaccttgacccttacatccaagagtttgggatcaaagtgaaagatgacatggctgaggtgacggggagggtccttccagcgcctatcctgcagtatggaggacggaaccgtgccatagcgacgcccaaccagggagtgtgggacatgagagggaagcagttttataacggcattgagatcaaagtgtgggcaatcgcctgcttcgccccgcagaaacagtgcagagaagaagtgctgaagaactttaccgaccagctgcgtaaaatctccaaggatgctgggatgccgattcagggtcagccctgtttctgtaaatatgcccagggtgcggacagcgtggagcccatgtttagacatttgaagaacacttactccgggctgcagctcatcattgtcatcttgccggggaagactcctgtctacgctgaggtcaaacgtgtgggagacaccctgctgggcatggccacacagtgtgttcaggtgaagaacgtagtgaaaacgtcccctcagactctctccaacctttgcctcaagatcaatgtgaagctgggaggaatcaacaacatcctggtacctcatcaacggtcagcagtgtttcagcagccagttattttcctgggagcagatgtcacacaccctcctgctggagatggcaagaagccctccattactgctgtggtaggcagtatggatgctcatccaagccgatactgtgccacagtgcgagtgcagaggccccggcaggagatcatcgaagacttgtcttacatggtgcgagaactgctgattcagttttacaaatcgacccggttcaagcccaccaggataattttctacagagatggcgttccggaaggacagctaccacaaattctgcattatgagctcctggccatcagagacgcttgcatcaaactggagaaagactaccagccaggcattacttatattgttgttcaaaaacgccaccacacgcgcctcttctgtgcagacaagtcagagaggattggaaagagtgggaacatccctgcaggaacaacagtcgataccagcatcactcatccctttgaatttgacttctatctgtgcagccatgcaggcatccagggaaccagccgaccgtctcattactatgttttatgggacgacaatcgtttcacagcggacgagctgcagattctaacctaccagttgtgccacacgtacgtgcgttgcactcgctcagtctccatccctgcgccagcctactacgctcgtcttgtggccttccgtgctcgctaccatcttgtggacaaagaacacgacagtggcgagggcagccacgtgtctggtcagagtaatggtcgggacccccaggctctggctaaagctgttcagattcatcacgataccctgaggaccatgtactttgcctgaacaccatccgtcgccatcaccaatccctctcccgtaatttctacctgagtgggcacaacgcctgttaccaccaccacctcatccccatcccttattcccaatgactgcccgtcacacacacatcacagaccttacagtgattcactcaatttcaagaaacaaaaggcccctcgtctgtaaaacacagcccaactcaacagtctcatgcactcaaaaggttattattattattattattgttgacattttatcaattttaccaggactcgtgttgtttttatgttcaatttttaaaatgtggatattatgtaattgtattttatgctacctttacactcctgtgtatgtaagtatgcaatacggatgggagaaacttgggcaatttatggtaaattatcacaaaatccattttttcttttaaaacaaaaaaaaaaaaactgccaccacgatgctgcctcatggcccatccgaatgcgggatgccagtgttccaagtcccaagcatatagatcctcctgaggggtgaacctgggcatgcacacacacacacacacacatatatcattctgttgttgtgaaccacattcattttttaaaaactgttttttaataatgttatttttttaaaaagccttgaggagcttgaggtttggtacattagcacttagtgttaggatgtaggtgccgcgggtcctgcatggaagagttttagtcaaacggggagggaagcgggtgtagcatatcgtagacagtcctaccgcgctgtctgtgctggacagcccgttcctttagagattttcatgtagagacatgcctaggagtaaaatagcgggaccatttgcgtagagtgtatcaaatatacttgcaacccatgcacctaaaccagcattactaacagccaaaatgatgccaaccaatggatatggggcacttaacaggaagctgttttatttctgtgttgctctttaattacttttgaggcacttttttttttacattttacataattgatttagtttacttcaaagtggggaggcttgacacggtatacttttgatgtcttcacacctgcacttgctttcagaacaaagtggtaactatggcaataggcaaggtcaacactctttagaatttgaatgcaggcaaatgcaaagtctgtgatcacgtaagtgctgcaaagctgaactctcactcagcgcgtgaccttgctccaatcattctgcacattccaacgtgtactttataaccacatggtgcattggatacatccactactgcacagttttgtgtactttcttttatccatgcctttttttttttgttaaaagctggagacatttacaacttagacctgggtagaagcacacacatctccacctttacagtatctttctgtggcatacagcgaccaacttccagactcactcgtccaagccaaactatcattgaaccccctttacgtcatcacttcctctcctcgccacctgatctgacctttcccacctgcagcatcccctgccctaaccccctagtttgtgttagccaatccccattggtgctctgtgtgcatgggcagcacatgtagggggttgctacactaagacagggtaggaaatgattacgacttctacgacataatatgccctgccaatacatgtagtcactttctggatttacgaaaactaatgcatggaattatttttatgactgaatattctgagccaccttatgttttttttccttagcagtactagcacctttgtgtgctctgctgcctcttttctttcttcttttgccttgattgtgtaacggttaagagtgcgatttccttctgtcaatgattatgaatattgggactcgtgtccgagtgtatccttaagagggcactatggaaacggtctcaaaagttcatctcagtcagcccttaaagcgcctcaaatctctcctgacggtcagagcctctttagaatcgaaagggaacaaaaagacagagaccacacaagtttgatttttgtaatcattgtttattaacttacataatctatatgcctttgtacaccattttactgatctctcattgtgtctgaggtgatttgtatatataaatatataatattaacctgttatgtattttggctcaccactcactgggcctttcacacttgggggtccatcttttacttctcactctgtgctaaaaaaacaaacaaaaacaaggaccgttttccagcaccactgaaaccagatgcagttcttcattcactgaagccacaaagcaccttgtgaagggtgggcgatgaaacggcagcccccccaccccacaccccaccctgggaggacaccagagagcccactgccctccacacagcctcactgacgaagcaatattgataccactggttaagatcagcccttgtcatagcacttccccatagatttgaatgcaatgacatggattttggctctgtatgtgatagtagggaatcctgtcggggtgcgttattttttaaagaaaataaaaaaaatgttttttattaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]