2024-03-29 16:12:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003965633 5542 bp mRNA linear VRT 05-JUL-2019 DEFINITION PREDICTED: Takifugu rubripes argonaute RISC component 1 (LOC101062906), transcript variant X2, mRNA. ACCESSION XM_003965633 VERSION XM_003965633.3 DBLINK BioProject: PRJNA543527 KEYWORDS RefSeq. SOURCE Takifugu rubripes (Fugu rubripes) ORGANISM Takifugu rubripes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_042291.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 5, 2019 this sequence version replaced XM_003965633.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Takifugu rubripes Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5542 /organism="Takifugu rubripes" /mol_type="mRNA" /db_xref="taxon:31033" /chromosome="7" gene 1..5542 /gene="LOC101062906" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns" /db_xref="GeneID:101062906" CDS 429..3005 /gene="LOC101062906" /codon_start=1 /product="protein argonaute-1 isoform X2" /protein_id="XP_003965682.1" /db_xref="GeneID:101062906" /translation="
MEPGPSGAVPMGVYPPPLQQVFHAPRRPGMGTVGKPIRLLANYFEVEIPKMDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQLFGDRKPVYDGKKNIYTVLALPIGSEKVDFEVTIPGEGKDRIFKVSIRWLAKVSWRLLQETLVSGRLQVPLDSVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKTLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNANFNLDPYIQEFGIKVKDDMAEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKSERIGKSGNIPAGTTVDTSITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 435..2999 /gene="LOC101062906" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1599..2876 /gene="LOC101062906" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2010..2012,2022..2024,2058..2069,2076..2078, 2100..2102,2109..2111,2121..2123,2133..2135) /gene="LOC101062906" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2214..2216,2220..2222,2430..2432,2844..2846) /gene="LOC101062906" /note="active site" /db_xref="CDD:240015" ORIGIN
caggggtgaggggctggccttttttgttccgctggagaatcctgcttgaacggagagcaggagcacaacacaacgagcagaaatcacagcgttgcggacgatcggcgaaatcacagcgcctggacgaacagaacacccccgtgacaggaaaagtggcttcaaatcagtcggtatctctcttagttttgccgacattagcgccagtgtggcagactggcaactggcagctgtcgccgttagcctcaactcctttgcgagtctaggggttctgtaaggggcagggggcgggggtgcaccgagaaagaagaagactacatgccgagaggagggggctggaagtctgagacgcttccagcctgcaggggccggcggtttggccacagcaccctggactagttagctagtacccgcgcggctaagtgaatgggatggagccgggaccgtctggcgctgtgcccatgggggtctaccccccacccctacagcaggtgttccatgccccccgacggccaggcatgggtactgtgggcaaaccaatccggctcttggccaactactttgaggtcgaaatcccaaagatggatgtgtatcactatgaagtggacattaagcccgacaagtgtccacgcagagtcaacagggaggttgtggaatacatggtgcagcacttcaagccccagctcttcggtgacaggaagccggtgtatgatggcaagaagaacatttacacagtgctagcactccctatcgggagtgagaaggtggattttgaagtaaccatcccaggtgagggaaaggaccgaatattcaaggtgtccatccgttggctggccaaggtgtcatggcgcctgctgcaggagaccctggtcagcggccgattgcaggtcccccttgactcagttcaagccctggatgtggctatgcgccacctggcctctatgaggtacactccagtgggccgttcgttcttctccccacctgaaggatactaccacccgctgggaggtgggagggaagtctggtttgggttccaccagtctgtacgtcccgccatgtggaagatgatgctcaatattgatgtgtctgccacggccttctacaaagctcaaccagtaattgagttcatgtgtgaagttttggacattcgcaatattgacgagcagcccaagactctcactgactctcaaagggtccgttttaccaaggagattaaaggcctgaaggtggaagtgacccactgtggccaaatgaagaggaaatatcgtgtatgcaatgtcacccgacgaccagccagccaccaaacgttccccctccagcttgaaagtgggcaaactgttgaatgcacagtggcccagtacttcaagcagaagtacaacttgcagctaaaatacccccacctgccttgtctacaggtggggcaggagcagaagcacacctatctgcctctagaggtgtgtaacattgtagcaggacagcgttgcattaagaagctgactgataatcagacctctaccatgataaaagccacagctcgctctgcaccagacaggcaggaggagatcagcaggctgatgaagaatgcaaacttcaaccttgacccttacatccaagagtttgggatcaaagtgaaagatgacatggctgaggtgacggggagggtccttccagcgcctatcctgcagtatggaggacggaaccgtgccatagcgacgcccaaccagggagtgtgggacatgagagggaagcagttttataacggcattgagatcaaagtgtgggcaatcgcctgcttcgccccgcagaaacagtgcagagaagaagtgctgaagaactttaccgaccagctgcgtaaaatctccaaggatgctgggatgccgattcagggtcagccctgtttctgtaaatatgcccagggtgcggacagcgtggagcccatgtttagacatttgaagaacacttactccgggctgcagctcatcattgtcatcttgccggggaagactcctgtctacgctgaggtcaaacgtgtgggagacaccctgctgggcatggccacacagtgtgttcaggtgaagaacgtagtgaaaacgtcccctcagactctctccaacctttgcctcaagatcaatgtgaagctgggaggaatcaacaacatcctggtacctcatcaacggtcagcagtgtttcagcagccagttattttcctgggagcagatgtcacacaccctcctgctggagatggcaagaagccctccattactgctgtggtaggcagtatggatgctcatccaagccgatactgtgccacagtgcgagtgcagaggccccggcaggagatcatcgaagacttgtcttacatggtgcgagaactgctgattcagttttacaaatcgacccggttcaagcccaccaggataattttctacagagatggcgttccggaaggacagctaccacaaattctgcattatgagctcctggccatcagagacgcttgcatcaaactggagaaagactaccagccaggcattacttatattgttgttcaaaaacgccaccacacgcgcctcttctgtgcagacaagtcagagaggattggaaagagtgggaacatccctgcaggaacaacagtcgataccagcatcactcatccctttgaatttgacttctatctgtgcagccatgcaggcatccagggaaccagccgaccgtctcattactatgttttatgggacgacaatcgtttcacagcggacgagctgcagattctaacctaccagttgtgccacacgtacgtgcgttgcactcgctcagtctccatccctgcgccagcctactacgctcgtcttgtggccttccgtgctcgctaccatcttgtggacaaagaacacgacagtggcgagggcagccacgtgtctggtcagagtaatggtcgggacccccaggctctggctaaagctgttcagattcatcacgataccctgaggaccatgtactttgcctgaacaccatccgtcgccatcaccaatccctctcccgtaatttctacctgagtgggcacaacgcctgttaccaccaccacctcatccccatcccttattcccaatgactgcccgtcacacacacatcacagaccttacagtgattcactcaatttcaagaaacaaaaggcccctcgtctgtaaaacacagcccaactcaacagtctcatgcactcaaaaggttattattattattattattgttgacattttatcaattttaccaggactcgtgttgtttttatgttcaatttttaaaatgtggatattatgtaattgtattttatgctacctttacactcctgtgtatgtaagtatgcaatacggatgggagaaacttgggcaatttatggtaaattatcacaaaatccattttttcttttaaaacaaaaaaaaaaaaactgccaccacgatgctgcctcatggcccatccgaatgcgggatgccagtgttccaagtcccaagcatatagatcctcctgaggggtgaacctgggcatgcacacacacacacacacacatatatcattctgttgttgtgaaccacattcattttttaaaaactgttttttaataatgttatttttttaaaaagccttgaggagcttgaggtttggtacattagcacttagtgttaggatgtaggtgccgcgggtcctgcatggaagagttttagtcaaacggggagggaagcgggtgtagcatatcgtagacagtcctaccgcgctgtctgtgctggacagcccgttcctttagagattttcatgtagagacatgcctaggagtaaaatagcgggaccatttgcgtagagtgtatcaaatatacttgcaacccatgcacctaaaccagcattactaacagccaaaatgatgccaaccaatggatatggggcacttaacaggaagctgttttatttctgtgttgctctttaattacttttgaggcacttttttttttacattttacataattgatttagtttacttcaaagtggggaggcttgacacggtatacttttgatgtcttcacacctgcacttgctttcagaacaaagtggtaactatggcaataggcaaggtcaacactctttagaatttgaatgcaggcaaatgcaaagtctgtgatcacgtaagtgctgcaaagctgaactctcactcagcgcgtgaccttgctccaatcattctgcacattccaacgtgtactttataaccacatggtgcattggatacatccactactgcacagttttgtgtactttcttttatccatgcctttttttttttgttaaaagctggagacatttacaacttagacctgggtagaagcacacacatctccacctttacagtatctttctgtggcatacagcgaccaacttccagactcactcgtccaagccaaactatcattgaaccccctttacgtcatcacttcctctcctcgccacctgatctgacctttcccacctgcagcatcccctgccctaaccccctagtttgtgttagccaatccccattggtgctctgtgtgcatgggcagcacatgtagggggttgctacactaagacagggtaggaaatgattacgacttctacgacataatatgccctgccaatacatgtagtcactttctggatttacgaaaactaatgcatggaattatttttatgactgaatattctgagccaccttatgttttttttccttagcagtactagcacctttgtgtgctctgctgcctcttttctttcttcttttgccttgattgtgtaacggttaagagtgcgatttccttctgtcaatgattatgaatattgggactcgtgtccgagtgtatccttaagagggcactatggaaacggtctcaaaagttcatctcagtcagcccttaaagcgcctcaaatctctcctgacggtcagagcctctttagaatcgaaagggaacaaaaagacagagaccacacaagtttgatttttgtaatcattgtttattaacttacataatctatatgcctttgtacaccattttactgatctctcattgtgtctgaggtgatttgtatatataaatatataatattaacctgttatgtattttggctcaccactcactgggcctttcacacttgggggtccatcttttacttctcactctgtgctaaaaaaacaaacaaaaacaaggaccgttttccagcaccactgaaaccagatgcagttcttcattcactgaagccacaaagcaccttgtgaagggtgggcgatgaaacggcagcccccccaccccacaccccaccctgggaggacaccagagagcccactgccctccacacagcctcactgacgaagcaatattgataccactggttaagatcagcccttgtcatagcacttccccatagatttgaatgcaatgacatggattttggctctgtatgtgatagtagggaatcctgtcggggtgcgttattttttaaagaaaataaaaaaaatgttttttattaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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