2024-04-20 04:13:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003765340 7566 bp mRNA linear MAM 31-DEC-2019 DEFINITION PREDICTED: Sarcophilus harrisii argonaute RISC component 1 (AGO1), mRNA. ACCESSION XM_003765340 VERSION XM_003765340.4 DBLINK BioProject: PRJNA596784 KEYWORDS RefSeq. SOURCE Sarcophilus harrisii (Tasmanian devil) ORGANISM Sarcophilus harrisii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045428.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 31, 2019 this sequence version replaced XM_003765340.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sarcophilus harrisii Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7566 /organism="Sarcophilus harrisii" /mol_type="mRNA" /db_xref="taxon:9305" /chromosome="3" /cell_line="91H" gene 1..7566 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 38 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns" /db_xref="GeneID:100920633" CDS 144..2717 /gene="AGO1" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_003765388.1" /db_xref="GeneID:100920633" /translation="
MEAGPSGAAAGTYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVRDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 243..635 /gene="AGO1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 663..815 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 816..1178 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(972..974,1017..1019,1059..1061,1071..1073, 1125..1127,1146..1148,1152..1154) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1311..2588 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1722..1724,1734..1736,1770..1781,1788..1790, 1812..1814,1821..1823,1833..1835,1845..1847) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1926..1928,1932..1934,2142..2144,2556..2558) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
gcgggcgggagctgccggggtgggggggggagcggagcccggcccgggagcgggaaccacgggagcgaactggggcccgggcccccccacgccgtgcaccagactcactcccggctgcctgatctaacacacgggtatatgggatggaagcgggaccctcgggagcagctgcaggcacctacctgcctcccctgcagcaggtgttccaggccccgagacggcctgggataggcactgtaggcaagcccatcaagctcttggccaactatttcgaggtagatatccccaagatcgacgtctaccactatgaggtggacatcaaaccggacaagtgtccccgcagagtcaacagagaggtggtggaatatatggttcagcacttcaagccacagatttttggtgacaggaaacctgtgtatgatgggaagaagaacatctacacagttactgccttgcctattggcaatgaaagggtggactttgaggtgacaatccctggtgaagggaaggatcggatcttcaaggtttccatcaaatggatggccattgtcagctggcgtatgcttcacgaagccctggtcagtggacagattcctgtccctctggaatctgttcaggccctggatgtggccatgagacacctggcatctatgaggtacacccctgttggccgttccttcttctctccccctgagggatactaccaccctctggggggtgggcgtgaagtctggttcggctttcaccagtctgttcggccagccatgtggaaaatgatgttgaatattgatgtttcggccacggctttctacaaagcacagccagtcattgagttcatgtgtgaggtgcttgacataaggaacattgatgagcagcccaagccactaactgattcccagagagttcgattcaccaaggagatcaaaggactgaaggtggaggtgacccattgtgggcagatgaagaggaaataccgagtgtgtaacgtcacccgccggcctgccagccatcagacgtttcccttgcagttggagagtggacagacagtagagtgcactgtggcccagtatttcaagcagaagtacaacctacaacttaagtatccccacctgccatgcctgcaggtcggccaggaacaaaaacatacctacctgcctctggaggtctgtaacattgtggctggacagcgctgtatcaagaagctgacagacaatcagacttcaaccatgatcaaagctactgcaaggtcagccccagacaggcaggaggagatcagccgcctgatgaagaatgccagctacaatctagacccctacatacaggagtttgggatcaaagtcagagatgacatgacagaagtgactggccgagtactcccagctccaatcctgcagtatggtggacggaaccgagccatcgccacacccaaccaaggtgtatgggacatgcgaggaaagcagttctacaatggaattgagatcaaagtctgggccattgcctgctttgcaccccaaaagcagtgtcgggaagaggtgctgaagaacttcacagaccagctccgtaagatttccaaggatgcagggatgcccatccagggccagccttgtttctgcaaatacgcgcagggtgcagacagcgtggagcccatgttccggcatctcaagaacacctactcgggactgcaactcatcattgttatcctgcccgggaagacgcctgtgtatgcggaggtaaagcgagtaggagacacgctgttaggcatggccacacagtgcgtgcaagtcaagaatgtggtgaagacatctccccagactctgtccaatctctgtctcaaaatcaacgtcaagcttgggggaatcaacaacatcctagtccctcatcagcgatcagctgtctttcagcagcctgtcatattcctgggagcagatgtcactcatcctccagccggggatgggaaaaagccctctatcacagctgtggttggcagcatggatgctcacccaagtcgttactgtgcaacagttcgagtccaacgacccagacaggaaatcattgaagatctgtcttacatggttcgggagttgctcatacagttctacaaatccacccgatttaaacctacccgcattatcttctaccgggatggtgtccctgaaggtcaactcccacagatcctccactatgagctgctggccatccgcgatgcctgcataaagttggagaaggactatcaaccagggatcacatatatcgtggtccagaagcgccaccacactcgccttttctgtgccgacaagaatgaaagaattgggaagagtggaaatatcccagcaggcaccactgtggacaccaacatcactcacccatttgaatttgacttctatctgtgtagccatgcgggcatccagggcacaagccgaccatcccattactatgtcctctgggatgacaaccgtttcacagcagatgagctgcagatcttgacctaccagctatgtcacacttacgtgcgctgtacacgctccgtctccatcccagcacctgcctactatgctcgcctcgtggctttccgggcacgctatcacttggtggacaaagagcatgacagcggtgaggggagccacatatcgggacagagcaatgggcgagatccccaggccctggccaaggctgtgcaggttcaccaggacactttgcgcaccatgtactttgcttgaaaggcagaacgctgttacctcactggaaagaagaaagctttcagagcccaaggagccatacagatggaaggaatcccaaggaagaggagtccaggggagtgggaggggaatgggggcaggctggggggagggggttgggggaaggagagcttgtttccccactgcagagcagaagctgcatcactagggggtgggggatggggggcagggctggcaaagagggaccaccagccagagacccctgactcttcccttgctctgccacatctgacccgaccccagtggaccaagagagaggcagcatcgtcgctcacaggtgcccattttaaaatgcaatactaaagacttgtgactgggagggctccataaggtcggctctacagctgcggctcgagggacagaagctggtaggtttgggttcacttcttttagagggaaaagtgttggcttggaaaagagggtgggaggaggaagagggaaggatttttaggagccttaatcaaaaaggtatagattcatttaagaaaaaaaaaatcccaaaccaatattttaggatagtagagtttttaatgggtttgaaatccagtttgtagggaaattctaccaccagtagttttggttgctcctcccccagctgtcacccctcccctctgcggcacaccttccgtggcaccttcctctctccccttccccatcagatgtaaggcactatggcacttagtttgaattgacacagccctgtcttccttctgccccactggtgggtgaccagtgccttcactgtaatgctgcagaactgcaacctttttgtaccttttttttttgtgtgtgtgggagggggagaagggggatatgggaagaaggggagaaataccccaagtctcagaggcctcctgtaggtgacgctgccagctgtctgcatcagaaggaattgactatgacattcacagagtgaacccattgctttgagatcacaacctcaagatggttaaaatccattgaagacatttgcactttcagacatgacaagtttcttagctgctgagataactgacccttgccctcccctcactcctacccctctgtccccagattcccagagcgttatttcaatggcatcctttcctccatgacagttgagtctcccgtgtttcaacatttctttgctgggctatcttagaacaaaagatacttaggtctaaaagaagaaaaaaagagaaaactaaatgttatttttatacagtatcttgagtctgttgccaaaacttgcaggtgactctcatgtcctctgagtttacatcccagacacactgagccgtccgtctgtctgtccatagaagggttgtgcacctgggtcattgtttctgcccagttggcagggggtgaagttggagccctcctatttcttggttccctcccccactctgtgcattatccaccattcccttgcgccccttcccaagaggatcctgctgtctcatctattcttagtcggaactcaggctttccgactccagcatggcctataacacactttttgatagcttctgctgcttgctttcgctgctgtttacacaaaatacttttagttctgctcgcaaggggcagatggggaagcatatgcatgtgtacatataggcatccctctttctgcagtcagtgaaggggtctgattagggtaaagtgcgagggggtatagttagtcggtcacttgggggagaacaagagccccagactgtctaaggcctctttaggttactgggtgcccagggtatcagtggttaggccccttcctctgacatgggtaagtatagggactgcttatttatgcccagctggtgaggacaaggaacctcagctcattgtgggaatttctctttgcgctttaagggattagacatgaggcagcctagtctgtcatctcttctactgggctttagcttggttgttttgcaaccactgaccttgagggccacacccttagaagaagcccatgtgggaagccttggccgttaggcctagtggctggtaaagcagacacaggactggagactggcttgaaaccaaatctctgtccttgtctgctcagggaaaggtgggcaggtgttggaaaatggctcttcccccttcccagcagaagagttgccagaccatgatttgctatgcaaaataatctaccccaatctctatttttgttgaccatattgttcaaagatatcagcaaaatttagcacaaacaatagctgtggaatagggcattgggacagtttggtaattccttccattccttccttccttcccttccttcctagccagtagtatcgcctaccctgccgtccatgggctagatagctgggaaagccagtggctctcccctagttgtgggtggcagggtggggaggggctctgggagggggtgagctcacctaggagcctacattccttacacaagtgcctatattgtgatgtcaacactctgcccgcctctgtccatttccatatccccgcctctagtttgtgtccattcatacctctgggtggggctccagccttttgaagctcccccaggaccagtggctttgcatgttttctccgcatgtgtcttgggcttggggttcagggcagttttcctgggagggtacaatcattcaccagcatttttatccatgcccgtggcaggtggcagccacagggcccggtttgtgttcctccttttctctctctgcctccctcctgttgaattttgagctggggtctgaattgcttttttagaaatgttggcattacatatgccatttgtaaaataaataaatgaaagtgcgaggagcagcttgggcattcgtaaaaaaaaaaaaaaaaaaaaaccaacacaaaaaaaaacagctttgttgctcttgtgatttttttttttttttttttttagcctttgagacttgaaatataaacttgatcttagaatttgcacttgtgtgtgaggtgccgtgtgcaggatgagaaggtggtcctggcatcaagctctcatctctgtgggattgcttgtccagatgttgggggtacccagagtgccccggccaacctcttaactgtctattgcttcccccacttttctcagtacccccattctgcttctatgcctttttgagatcaagcctctgcagagccccagtgtcaatagttaagcctattgtgaagccattactcctttgcttctgagcacctggaattccattttttctataggtctgattcataatgtagtgcccatctggcatctggtgctgcatgagtgtccgtgtgagcctcttgctgtgtctgtcccaaggcctcagctgatgcagaatcaacaggcatgccaagctggggtaactacaggaggctttgcttctccttaggcccatcctaaccaccacaaggtgctattcctgctgtaatactgagcaccctgtatgcttctggtcctggttaccccagcagctgcctctctttctgggccacatctctgagtagcctcctttaaggaggcctggaattcaatgccttaggtggccaaatattctaggctgggtaggctaagggagcagagcgaactaattcttcttgccttctgttccttcatgggtgcatggggtcagattggaggaaagatctgtcccttccacagtttggaatagtcttgaggtatcaagccagtgattaaacagaaatggcaagaaatattcccgagtactgcaaaggccattcaggttggattgaattgattcttgattgacatgccagtcgggcatcccctttaatctaggatcaatgccacaggaccccctaggtccgagaagcagtgctggtggtggggatgagacctaggcaggacaggcagcttgggaagtcctttttctccttgcctgggtgaattgttatgtacaaaactgttggaggctttttctggagctgagacctggcagggcgggccatttggcaatagaatgtagggagagctacctccatgtagcaaaaaaagggggctttggaactagcatccaagggtagttgtgctttatttattaacctggtatttgtgccaggatgaatactcggttaccttcttctcccaaaagcttggacatcgtggatgtgccaagtctgtgaagggcaacccaaggcattctgcatcctctctgctctgtctggccctcagcagctggggaggtgctcttatcttttaatctcttcaatttttaaggacttgtcttctccctgggctgatgcaggacccaaaatggtattctacagccattccactctcttcagactctgagcttcaggctgctgcagagggagagggaggttggggacacgttactggagcactcaaggcttgtgaagaagcactaaaaaggggcagggttcatctcctttttgaaaatgaatcttcaaaacattgtgcaaataaagagaatctgttgagtctaatgacagtccaatggctgaacagcaataagaaaacgctggaggacattgttttgtgtacgtatgtggtgttgttgcacttagcagaggtatggtggacagagggttcggagcactcctgggatttagtttcagttcagtttccaaactttcacacctccctgagcccagtgaaggcggagctggccttggggccccacacccagagtccttgtttgcttttggttttctctttgacctgtgttagtgtcctgcttctgactgtatgctggatggtccttttgtgaaactgcccaagcggttgtaacggacatttatttctgaaacaagcagccgcatgatattgtgttttataaagataacaatggcttatgttttaaaagtg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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