2024-04-26 00:35:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003500671 4947 bp mRNA linear ROD 10-JUL-2020 DEFINITION PREDICTED: Cricetulus griseus testis and ovary specific PAZ domain containing 1 (Topaz1), transcript variant X1, mRNA. ACCESSION XM_003500671 VERSION XM_003500671.3 DBLINK BioProject: PRJNA72741 KEYWORDS RefSeq; includes ab initio. SOURCE Cricetulus griseus (Chinese hamster) ORGANISM Cricetulus griseus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613803.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XM_003500671.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4947 /organism="Cricetulus griseus" /mol_type="mRNA" /db_xref="taxon:10029" /chromosome="Unknown" /cell_line="CHO-K1" gene 1..4947 /gene="Topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:100765807" CDS 1..4947 /gene="Topaz1" /codon_start=1 /product="protein TOPAZ1 isoform X1" /protein_id="XP_003500719.1" /db_xref="GeneID:100765807" /translation="
MRPVTSSAATMDGDARGLRKRSLQLTPEPDKVGGCSLEARGREEESRQKRRAVAQASGGEATEGDKLAKEKGNISEAPSEDPQPGTDLVRKAALTSSESLQTVECSEFQNMAFLQSLAKEDLVEGIKRRIRIKKCKSLENLPLRITKNEAAQNTNVEFQDELYKNTPKYSCSSLSPGVEKHCSFESHDYSFLHSEGLNNENNFECKPHGVCMHIAENSLKLKKENLRSLAEKDGPETTAKLLKTEENVIASKLLLEESNLYQNKNNGLISCLQSEKSKYSIEESGIGRKHRKKVKLSEKEEKIIDLDFSNVNNNSELVLQENQMGAEGKETETSEPKKSFLKALRKINHNILSPVDHLCLPETVGKTSPKHQVNAVFQKTLESHLKEDIKNASESLGCRSVEPEDYFKSMISSAVKSPSDSHHMGKRSPWGDLRNETEESKVSCRRIIPMTGKRTWPFYSCARISVQCWKKTCLSDLNYPLPGSLENVRQHESVTHQTHLTDSKLLQQSLTERTIESSRKEMYDSGLNCLSSVSSVTPTLMVIKEAIPSDKKIKLEEPSRNGTEVVSSATEDTQLTNVTQSLTGNKKKRGNLSKLNLTMASQESQEANSFANKTIHRKACISKQTLVAPDLVKILNTGRLTNFKIPLLKNKMGKRKEVNSRSCEREAYSPLELLDSLSGVEAKQNRNKENICTATSGPQSLNVHSSVTPGEAGSHSFYNKTSCTAPSFAKKGYDNKAYSHISEPGNIISNKESISLKIENNTFSCDLGYIEQSSFCSEEQEAFVPISSEVSGRKMTKSISELKLGFPDILKAYEDDVLLIDVIQDDPELFGISSEGDLSFASEVSKISQEPSVSEEHPQADFKHMQLPGKKEPGDLSKEVALLDPGLLKLEICPSLSAAEESQRDPKGAAISLEAAEETIVSENLEDLSEQARASDSGAQCSSSDNAAAEEEQENTQEVCKSKESKDAEVVVNECQLAILGPKPLCSSVLPLKLSSHQENGVPMPWMNDFRFPGRPSSVLQLQNSETCEIFKREKNTGVFQKPLGLVIPHRYCKFHFNTLRGCERAQCKFVHVPEQGDEKICVDVFKKYISLDEQRLLQRAAHIFLEYYRKFPPGVHFSLQVLNDLLIALLKHCLLKEVFQVVKLSTMAKVLPALKILLKIFEYVAAMKLRNAVPALIEIFCKFIEAGMVPDSEHLNYIVKLLYQAQASHQDIAAVLEAKSRLRVRQLKKTWKCDLDSALSEVETCKEKGDWTKLGNLYISIKMGCEEFADFQRFCACVAESLTKDCKEEWPGVPFCEFAETVSKDPQFSEVDKTLLGRIGINAMYFYHRLMLWSKGRMVLDTLYELKIHFTSLKGLTGPEKVAPRCQIVNVAVEIFIKSGSLDGAIWVLRESEWIINTPLWPCDRMDVLNRHNLLCTIAHETLGKNLYRQTFEVLRNLPGFQNSQETVEVSQYSLLFNKLLDACIESSSLGISSSVAEFMVSKSIPIDFSFLRRLITALGRSCLWLKARAHYKSALSLGCYPPLEGNLYRKLLLVPSYLSEIEMLLAIEIFLVSNASSIQSPGTSTQMLQIVLKRCEESKSRSKDDYQAAVERLIMAARISDPKLFIKHMTVNINKEQVYSLEHCSALKWLKENMKWAGKVWLFTNH"
misc_feature 3727..4254 /gene="Topaz1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" ORIGIN
atgcggcctgtcacctccagcgcggcgacgatggacggcgacgcccgaggcctgaggaagcgaagtcttcagctgacaccagagccagacaaggtgggaggctgcagccttgaggcccgggggcgcgaggaggagagcaggcagaagaggagagcggtggcccaggcctctggaggagaagcgacagaaggtgacaagttggccaaagagaaaggaaacatttctgaagctccaagtgaagatccacagccagggactgacctggtaagaaaggcagcattaaccagttcggaatctttgcaaacagtggaatgcagtgaatttcagaatatggctttcttacagtctttggctaaggaagatttggtagaaggtattaaaagaagaattcgaattaagaaatgcaaaagtttagaaaacctacctctcagaataactaagaacgaggcagcacaaaatactaatgttgagttccaagatgaactgtacaagaatactccaaaatattcttgtagcagcttatcacctggagtagaaaaacattgcagttttgagtcacatgattacagtttcctccattctgagggtcttaataatgaaaacaactttgagtgtaaacctcacggtgtgtgtatgcacatagcggagaattcattgaagttaaagaaagaaaaccttaggagtcttgcagagaaggatggcccagaaactactgctaagctcttaaaaactgaagaaaatgtaatagccagtaaattactgcttgaagaaagtaatttataccaaaataaaaacaatggcttgatttcttgccttcaaagtgaaaaaagcaaatattcaatagaggagagcggcattgggagaaaacacaggaagaaggtgaaactgtctgaaaaagaagaaaaaattattgatcttgatttctctaatgtaaataacaattctgagttagtgctacaagaaaaccaaatgggtgcagaagggaaagaaacagagacctcagagcctaaaaagagttttctaaaagctttaagaaaaataaaccataatatactctctccagtggaccatttatgtcttccagaaacagtagggaaaacaagtcccaaacatcaagtaaatgctgtgtttcagaaaacccttgaatcacatttgaaagaggatattaaaaatgcttcagagtccttaggatgcagaagtgtggagccagaagattattttaaatccatgataagctctgcagtgaagtcacctagtgatagccatcacatggggaaaagatctccatggggagatttgagaaatgaaactgaagagtcaaaggtaagctgtcgcagaataataccaatgactggtaaaagaacgtggcctttttattcttgtgctagaatatcagtccagtgttggaaaaagacttgcctgtcagatttaaattacccgcttccagggtctctggaaaatgttaggcaacatgaatctgtcacacaccaaactcacttaactgactccaaactgttacaacagtccttaacagaaagaaccattgagtcctcaaggaaagaaatgtatgattctggtttaaattgtttgtcttcagtttcttcagtcacacctactttgatggttataaaggaagccatacccagtgataaaaagataaagttagaggaacctagcagaaatgggacagaggtagtttctagtgctactgaagacacccagctaactaatgtaactcaaagcttaacaggaaataagaaaaagagagggaatttatccaaacttaatttgaccatggcatcccaagagagccaggaagcaaatagctttgcaaacaaaactatccatcgaaaagcttgcattagtaagcaaacacttgtggctccagacttagttaaaatattaaacacaggacggctgactaattttaaaatccctttactgaagaacaagatgggaaaaagaaaagaagtaaattccagatcatgtgagagagaagcttacagtcccctagagctactagacagtttatctggagtagaagcaaaacaaaacaggaataaggaaaatatctgcacagcaacttcgggacctcagtctctgaatgtacatagtagtgtaactccaggggaagctggttctcactcattctacaataagacttcctgcactgctccaagctttgcaaagaaaggttatgataataaagcatatagtcacatctctgaaccaggcaatattatttctaataaggagtctatttctcttaaaattgaaaataataccttttcttgtgatcttgggtatattgagcaaagttcattctgctctgaggaacaagaagcatttgtgccaatttcttctgaagttagtggtagaaaaatgactaaaagcatttcagaactcaaattggggtttccagatatccttaaagcatatgaagatgatgtcctcttgattgatgtaattcaagatgacccagagctctttggaatctccagtgaaggggatctctcatttgcttcagaagtctccaagataagccaggagcccagtgtatctgaagagcacccacaagcagactttaagcacatgcaacttccagggaaaaaagaaccaggcgatttgagtaaagaagttgccttgctggaccctggattgctgaaactggagatctgtccttccttgtcagcagcagaggagtcgcagcgtgatcctaaaggtgcagccatctccttagaagccgctgaggagactattgtaagtgagaacctggaagacctcagtgaacaagcgagagcttcagactcgggtgcacagtgcagcagttcagacaacgcagctgctgaagaagagcaagagaacactcaggaagtttgcaaaagcaaagagtctaaagatgcagaggttgtggtaaatgaatgtcagttagcaatcctgggccccaaacctctctgctcatcggtgcttcctttgaagctaagcagccatcaggaaaatggagtgccaatgccctggatgaatgatttcagatttccaggaagaccttcttctgtcctacagctgcagaattctgaaacttgtgaaatatttaaaagagaaaaaaatacaggggtgttccagaagcccttagggttggtgataccccatagatactgcaaatttcattttaatacattgcgtggctgtgaaagagcacagtgcaagtttgtccatgtacctgagcagggagatgaaaagatctgtgtggatgtgtttaagaaatacataagccttgatgagcagcgtttgctacagagagcagcacacatattcctggagtactacagaaagtttcccccaggggtacacttcagtctacaagtcctgaatgaccttctgatcgctctactcaagcactgtttattgaaagaagtctttcaggtggtgaagctgagcacaatggctaaagtgctgcctgccctgaaaatattactaaaaatatttgagtacgtggcagctatgaagttaaggaacgctgtgcctgcattaattgagattttttgcaagttcattgaagctgggatggtacctgactcagagcacttgaactatattgtcaagctgttataccaagcacaggcatcccatcaagacatagctgcagttctggaagccaagtccaggttacgagtgaggcaactgaaaaagacctggaagtgtgatttagactcagccttgagtgaagtggagacttgtaaagaaaaaggtgactggaccaaattgggaaacctgtatattagcataaaaatgggctgtgaagaatttgcagatttccagagattctgtgcttgtgttgctgaaagcctcacaaaggattgcaaagaagaatggccaggtgttcctttttgtgagtttgctgaaacagttagcaaagatccacagttcagtgaggtggataagactttgttgggaaggatcggaataaatgctatgtacttctatcacagactgatgctatggtccaagggaaggatggtcttagatacactgtatgagctaaaaatacattttacaagtttaaaaggacttacgggacctgagaaagtggcaccacgatgtcaaattgtgaatgttgcagtggaaatttttatcaaaagtgggagccttgatggtgccatttgggtgctgagggaatcggaatggataatcaatacaccactttggccttgtgatagaatggatgtgcttaatcggcataatttgctctgtactattgcacatgagaccctgggcaagaatctttacagacagacatttgaagttttgaggaatctgccaggctttcagaattctcaagaaactgtggaggtttcccagtatagccttctttttaataaacttctagatgcctgtatagaaagtagcagtcttggcatatcatcttctgtagccgagttcatggtttcgaaaagcatccctattgacttttcctttctcaggagactaatcactgccttaggaaggagttgtctgtggctcaaagccagagcccactacaaaagtgctctttcactgggttgctacccaccattagagggaaacttataccggaaactcctattggttccttcttacttgtctgagattgaaatgcttttagctatcgaaatatttctggtgtctaatgctagcagtattcagagcccagggacttccacacagatgctacagatcgttttgaagagatgtgaagaaagcaaatctcgaagcaaggatgactatcaagctgcagtcgaaagattgatcatggctgctcgaatatcagaccccaagctcttcattaagcacatgaccgtcaatattaacaaggagcaggtgtatagcctggagcattgttctgccctgaaatggttgaaagagaatatgaagtgggctggaaaggtttggcttttcactaaccattag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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