2024-04-20 00:55:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_214561 1402 bp mRNA linear INV 22-DEC-2022 DEFINITION Strongylocentrotus purpuratus homeobox (H-6 family) (HMX), mRNA. ACCESSION NM_214561 VERSION NM_214561.2 KEYWORDS RefSeq. SOURCE Strongylocentrotus purpuratus (purple sea urchin) ORGANISM Strongylocentrotus purpuratus Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus. REFERENCE 1 (bases 1 to 1402) AUTHORS Tu Q, Cameron RA, Worley KC, Gibbs RA and Davidson EH. TITLE Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis JOURNAL Genome Res 22 (10), 2079-2087 (2012) PUBMED 22709795 REFERENCE 2 (bases 1 to 1402) AUTHORS Martinez P and Davidson EH. TITLE SpHmx, a sea urchin homeobox gene expressed in embryonic pigment cells JOURNAL Dev Biol 181 (2), 213-222 (1997) PUBMED 9013931 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from D85079.1. On Aug 31, 2012 this sequence version replaced NM_214561.1. ##Evidence-Data-START## Transcript exon combination :: D85079.1, JT104524.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096960, SAMN01103178 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1402 D85079.1 34-1435 FEATURES Location/Qualifiers source 1..1402 /organism="Strongylocentrotus purpuratus" /mol_type="mRNA" /db_xref="taxon:7668" gene 1..1402 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="homeobox (H-6 family)" /db_xref="GeneID:373358" misc_feature 110..112 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="upstream in-frame stop codon" CDS 122..1339 /gene="HMX" /gene_synonym="homeobox; SpHmx" /codon_start=1 /product="homeobox protein Hmx" /protein_id="NP_999726.1" /db_xref="GeneID:373358" /translation="
MDSSRELSGEEPRSPSPRHETSKMRLSPDRPSHHPARPPASLASQPLRPAHYQDDDDSYRTHTPPPSQPRTKGFSIESILSPTDKHRKSPRSPPMSPSSPSMSSNGYSEGPIYGSTRHPLSATVPGLGRAALDELAAHRAAALHIPSAALPFSHLAHNPAFYAWMHGASFLHYHGMPAFNSHPPIAQPLTNSSRLAMAKDISPRPTQSHSSFGEEGGEKDSRGRESPDSEHRRNNGHEEDDDDDDDQSPQKKKKKTRTVFSRSQVFQLESTFEVKRYLSSSERAGLAANLHLTETQVKIWFQNRRNKWKRQMAAELESANLAHAAQIRAQANLAQVSAVHVHAYAQRMVRVPILYHENHPTTGSSLHSPNILPFPMPYPGSYHQISSSTSSTSSARSPTSTSIVT"
misc_feature 122..475 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="propagated from UniProtKB/Swiss-Prot (Q26656.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 722..898 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="propagated from UniProtKB/Swiss-Prot (Q26656.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(881..895,899..901,950..952,968..970,1007..1009, 1013..1018,1025..1030,1034..1042,1046..1051) /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 887..1048 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(887..889,896..898,1016..1018,1025..1030,1037..1039) /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1268..1336 /gene="HMX" /gene_synonym="homeobox; SpHmx" /note="propagated from UniProtKB/Swiss-Prot (Q26656.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" ORIGIN
cggccgcttggaaatgctagcttgtatttgaatgtattaatgatttgaattcgtcgtttgaaggttgaagttatcggagaagtatcacttttggctctttcaaacattttgatcgttatctatggacagtagccgtgaactatcaggagaggaacccagatctccatctccacgccacgaaacgagcaagatgcgtctatcacctgaccgacccagtcatcacccagcccgaccccccgcatctctggcgtcgcaaccactccgccctgctcattatcaagacgacgatgatagctaccgtacacacaccccgccaccgagccaaccgagaacgaagggcttcagcatcgagagcattctctcaccgacggacaagcatcggaagtcgccgagatcacccccgatgtcgccatccagtccgtcgatgtccagcaatgggtacagtgaagggcccatatacggctccactcgacacccactatcggcgaccgttccggggttgggacgggcggcgttggatgagcttgccgctcaccgagcagcggctctccatatcccttctgccgcactccccttctctcacctagcgcacaaccctgccttttatgcctggatgcacggggcatccttcttgcattatcacggcatgccggctttcaactcgcacccaccgatagcccagccactaaccaacagtagccgtctcgctatggccaaggatatctcacctcgaccaactcaatcccatagcagcttcggcgaggaaggcggcgagaaagacagtcgtggtcgcgaatcgcccgattccgaacaccgtcgaaataatggacacgaagaagacgatgatgacgacgacgatcaatcgccgcaaaagaagaagaaaaagacgagaactgtcttttcgcgaagtcaggtctttcaacttgaatcgacgtttgaagtgaagcggtacctgtctagttctgagcgggctggactagcagcgaatcttcacctgacggagacccaggtcaagatctggttccagaaccgtcgcaacaagtggaagcggcagatggccgccgagttggagtcggccaatctggctcacgccgcccagatacgcgctcaggcaaacctcgcgcaggtcagcgctgtgcatgttcatgcgtatgcgcagcgtatggtccgcgtaccgatactctatcacgagaatcatcccaccacgggttcgagtctgcactcgcctaacatcttgcctttcccgatgccgtaccccggttcgtatcatcaaatcagctcgtcaacatcgtctacatcatcagcgagatcgcccacgtcaaccagtattgtgacatgaagtgtgacccgttgataacggaacaatgctattcgtatgaagaaggcaactttcccggattct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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