2024-04-20 22:24:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001361678 3115 bp mRNA linear PLN 03-SEP-2021 DEFINITION Zea mays uncharacterized LOC100382704 (LOC100382704), mRNA. ACCESSION NM_001361678 XM_020540627 VERSION NM_001361678.1 KEYWORDS RefSeq. SOURCE Zea mays ORGANISM Zea mays Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea. REFERENCE 1 (bases 1 to 3115) AUTHORS Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V and Yu Y. TITLE Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs JOURNAL PLoS Genet 5 (11), e1000740 (2009) PUBMED 19936069 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DV533137.1, CABHLF010000011.1 and BT065090.1. On Mar 29, 2018 this sequence version replaced XM_020540627.1. ##Evidence-Data-START## Transcript exon combination :: SRR3147035.3233.1, SRR3147023.1551.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-215 DV533137.1 1-215 216-789 DV533137.1 233-806 790-810 CABHLF010000011.1 18881700-18881720 c 811-947 CABHLF010000011.1 18881484-18881620 c 948-1045 CABHLF010000011.1 18881309-18881406 c 1046-1143 CABHLF010000011.1 18881112-18881209 c 1144-1300 CABHLF010000011.1 18880880-18881036 c 1301-1417 CABHLF010000011.1 18880626-18880742 c 1418-1525 CABHLF010000011.1 18880437-18880544 c 1526-1588 CABHLF010000011.1 18880279-18880341 c 1589-1702 CABHLF010000011.1 18880082-18880195 c 1703-1868 CABHLF010000011.1 18879619-18879784 c 1869-1937 CABHLF010000011.1 18879477-18879545 c 1938-3115 BT065090.1 1-1178 FEATURES Location/Qualifiers source 1..3115 /organism="Zea mays" /mol_type="mRNA" /cultivar="B73" /db_xref="taxon:4577" /chromosome="7" /map="7" gene 1..3115 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /note="uncharacterized LOC100382704" /db_xref="GeneID:100382704" exon 1..215 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" misc_feature 203..205 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /note="upstream in-frame stop codon" CDS 206..2866 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /note="putative argonaute family protein" /codon_start=1 /product="Protein argonaute 16" /protein_id="NP_001348607.1" /db_xref="GeneID:100382704" /translation="
MPEHSMAAKMAGAVQVLKDDTVKRTPMARPSNGREGKPIRLLSNHFSVKLRGVDAVFYQYSVCIKSEDDKVVDSKGIGRKVIDKLLQTYCSELDGKDFAYDGEKCLFTVGPLPQNNFEFTVILEETSSRAAGGSPVHESPTQANKKRVKRSHLAKKFSVDISYAAKIPLQSVALALRGSESEHGQDVLRVLDVVLRQQQAKRGCLLVRQSFFSDDSRNLVDLTGGVSGCRGLHSSFRTTIGGLSLNMDVSTTMVVTPGPVIDFLVTNQNVRDIRDIDWPRAKKMLKNLRVKAKHNNMEFKIIGLSDQPCSRQMFPMKVRNGNIEIKSVDITVQDYFKSKQVELTMPYLPCLDVGKPKRPNYLPIELCHMVSLQRYTKALSSQQRAMLVEKSRQKPQERMRVVTDAVKSNMYDDDPILSSCGIEIEKQLTRVDARVLSAPALVVGNSEDCIPNRGRWNYNNKRLFDPVKIERWAIVNFSARCDMSRISRELINCGRSKGIFIECPHSLVDEDSQSRRCSPVERVEKMFEKVKASLPGPPEFLLCLLPERKNCDIYGPWKKKNLHEMGIVTQCIAPSNKMNDQYFTNVLLKINAKLGGMNSKLALEHRQMIPVVTQIPTLILGMDVSHGSPGRADIPSIAAVVGSRCWPLISRYRASVRTQSPKVEMIDSLFKPLDDGKDDGIMRELLLDFYQTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAYQSMGQGDLPKFTVIIAQKNHHTKLFQADSPENVPPGTVVDSGIVHPRQYDFYMCAHAGPIGTSRPTHYHVLLDEIGFSADNLQKLVLSLSYVYQRSTTAISVVAPICYAHLAAAQMGQFMKFEEFADTSSGSVNSSSPPSIPELPRLHADVCSSMFFC"
misc_feature 257..2863 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" exon 216..388 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 389..591 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 592..810 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 811..947 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 948..1045 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 1046..1143 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 1144..1300 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 1301..1417 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 1418..1525 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 1526..1588 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 1589..1702 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 1703..1868 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 1869..1984 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 1985..2122 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 2123..2253 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 2254..2319 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 2320..2383 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 2384..2495 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 2496..2569 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 2570..2664 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 2665..2696 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" exon 2697..3115 /gene="LOC100382704" /gene_synonym="argonaute6; GRMZM2G347402; GRMZM2G432075" /inference="alignment:Splign:2.1.0" ORIGIN
cgaactgctggaccggagatggcctaaacatagggtttagaccgttgccgtccctactcccgcctagccgaccccactcgtcccagtcccagtcccagtccgccgcctggttccttcttgctcttccctccactctctacagacgcagattgacaaggaagagagagagaggccgaggggaggaggcgtcgtcgtcttcttctgaatgcctgaacatagtatggctgccaaaatggctggagctgtccaagtgctcaaggatgacactgttaaacgcacacccatggcacgacctagtaacggccgtgaaggaaagcccattaggttgctgtcgaaccacttctcagtgaagcttagaggagttgatgctgttttctaccaatacagtgtctgcatcaaatctgaggatgataaggtggttgatagcaagggtattggccgaaaggtcatagataaactattgcaaacatactgttctgagcttgatgggaaggattttgcatatgatggagagaaatgtctatttactgtgggacctcttccacagaataactttgagttcactgttatcttggaggaaacatcttcaagggctgctggtggaagtccagtgcatgaaagccctactcaagctaacaaaaagcgagtcaagcgatcacatctggcaaaaaagttcagtgtagacataagttatgccgcaaagattcctcttcagtcggttgctttggctcttcgaggaagcgagtcagaacatggtcaagatgttctgagagtccttgacgttgttttaaggcaacagcaggctaagagaggttgtctacttgttagacagtcatttttcagtgatgatagtcgaaaccttgttgatttaactggtggagttagtggttgtcgtggactccactctagtttccgtactacaattggtggtctttcactaaatatggatgtttcaaccactatggttgtaactcctggaccagttattgattttctcgtcacaaatcaaaatgtaagagacatcagagatattgactggcccagggccaagaaaatgcttaaaaatctcagagttaaagctaagcacaacaacatggagttcaagattattggccttagtgatcaaccatgctctagacagatgttcccaatgaaagttcgaaatggaaacatcgaaattaaatctgttgatatcactgttcaggattattttaaatccaagcaagttgagctaacaatgccttatctgccatgtcttgatgtgggaaaaccaaaacgccctaattatctcccaattgagttatgccacatggtatcacttcaacgttatacaaaggcactgtcttctcaacaaagggcaatgttggttgaaaagtcacgacagaaacctcaagaaagaatgcgagttgttacagatgctgtaaaaagtaatatgtatgatgatgatccaatcttatcttcatgtggtattgaaattgagaaacaacttactcgtgttgacgctcgtgttctctctgcaccagcgctagttgtgggcaacagtgaagattgcatcccaaacaggggtaggtggaactacaataataagaggctattcgatccagtcaagattgagcgttgggccattgttaatttctctgctcgttgtgacatgagccgaatctcaagagaactgataaactgtggacgcagcaaaggcattttcattgaatgtcctcacagtttggtggatgaggacagccagtctaggagatgttcacctgtggaaagggttgaaaagatgtttgaaaaagtcaaagcaagccttcctggtcctccagagtttctcctttgtcttttaccagagaggaagaattgtgatatttacgggccatggaagaagaaaaatcttcatgaaatgggtattgtcactcaatgcattgctccaagtaataagatgaatgatcaatatttcaccaatgttcttctaaaaattaatgctaagcttggtggaatgaactccaaactggcactggaacatcgtcaaatgataccagttgtgactcaaataccaacattaattcttggcatggatgtttcacatggttctccaggtcgagcagatataccatcaattgctgcggttgttggatctagatgctggccattgatatcacggtacagagcatctgtgcgcacccagtctccaaaggtagagatgattgattctctatttaagccactggatgatgggaaggatgatggcataatgagggaacttctactagacttctaccaaaccagtcaacaaagaaagcctaagcagataatcatcttcagggatggtgttagcgagtctcagtttagccaagtactgaacgtagaacttaatcaaattataaaggcatatcagagtatgggacagggggaccttccgaagttcacagtgatcattgctcaaaagaatcaccacacaaaactcttccaagctgattcaccagagaacgttccacctgggactgttgtggactccggcatagttcatccaagacagtatgatttctacatgtgtgctcatgccggaccaattggtacttcaaggccaacccattaccatgtgttgcttgatgagattggcttctctgcagataatctccagaagctagttctttcactttcatatgtgtaccagaggagcaccactgcgatttctgtggtggcacctatctgttatgcccacctcgcagcagctcagatgggccagttcatgaaatttgaagagtttgcagatacgtcgtcagggagtgtcaattcatcatcgccaccatcaataccagaattgccacggctgcatgctgatgtctgcagttccatgttcttctgttgacgtgattttagtttgaccgttgtggggtagggccaattctttgtgaaaggaaccttaccttatatgttggcacacagcaggctaaccgtttttgtgaagaaaccatgtaggtcgttagttgtcgtatatcgcacgcgtgcatctttttggagcggttttcggctccccccacccacaggtggcggttccgttaggtacagtttccagattttaacgatgctaatacagtaaaagcagtttgtacattct
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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