2024-03-29 07:26:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001354861 1005 bp mRNA linear PLN 29-APR-2021 DEFINITION Glycine max homeodomain/HOMEOBOX transcription factor (LOC100797862), mRNA. ACCESSION NM_001354861 XM_003528727 VERSION NM_001354861.1 KEYWORDS RefSeq. SOURCE Glycine max (soybean) ORGANISM Glycine max Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from ACUP04002421.1 and AK245374.1. On Aug 26, 2017 this sequence version replaced XM_003528727.3. ##Evidence-Data-START## Transcript exon combination :: BU548199.1, FK017342.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN09064557, SAMN09064558 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-4 ACUP04002421.1 4785-4788 5-953 AK245374.1 2-950 954-1005 ACUP04002421.1 6025-6076 FEATURES Location/Qualifiers source 1..1005 /organism="Glycine max" /mol_type="mRNA" /cultivar="Williams 82" /db_xref="taxon:3847" /chromosome="7" /map="7" gene 1..1005 /gene="LOC100797862" /note="homeodomain/HOMEOBOX transcription factor" /db_xref="GeneID:100797862" exon 1..521 /gene="LOC100797862" /inference="alignment:Splign:2.1.0" misc_feature 153..155 /gene="LOC100797862" /note="upstream in-frame stop codon" CDS 168..884 /gene="LOC100797862" /note="homeobox-leucine zipper protein ATHB-12-like" /codon_start=1 /product="homeodomain/HOMEOBOX transcription factor" /protein_id="NP_001341790.1" /db_xref="GeneID:100797862" /translation="
MEYTYSAGVEAETHTSSSTTPSRSKKRNNNTRRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKENQTLLIQLQKLNHLMQKPMEPGQRCTQVEAANSMDSESENGGTMKCEAEGKPSPSMEISEHLLGVLSDDDTSIKVEDFGLEDEHGLLNFAKHVDGSLTSPEDWNAFESNDLLGQSTTDDYQWWDFWS"
misc_feature 264..416 /gene="LOC100797862" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(264..266,384..386,393..398,405..407) /gene="LOC100797862" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 420..545 /gene="LOC100797862" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:426641" exon 522..1005 /gene="LOC100797862" /inference="alignment:Splign:2.1.0" ORIGIN
gaccaccatgataggaactccaataagcaaaagccaattgatacgtgcatatcacaaaactactcttaaacacacacacaccccaaaaaaatcctctatcaccaaactcacctatttcctcaactcaaggccctatagtcccagcaagtgagtgagcgtcacacaacatggaatatacttattcagcaggtgtagaggcagaaactcacacaagtagcagcaccaccccatcaagatcaaagaagagaaacaacaacacaagaaggttcagtgatgaacaaatcaaatcattggagaccatgtttgaatcagagtcaaggcttgagcctagaaagaagttgcagctggccagagagcttggattgcagccaaggcaagttgctatatggtttcagaacaagagggctaggtggaagtcaaagcaacttgagagagactatggcatactccaatccaattacaacagtttggcttcccgttttgaagctcttaagaaggaaaatcaaacattactaattcagctgcagaagctgaatcatctaatgcagaagccaatggagccaggtcagagatgcacacaagttgaagcagcaaacagcatggacagtgaatcagaaaatggaggcaccatgaaatgtgaagctgagggaaagccaagcccatcaatggaaatatcagaacatttacttggtgttctgtctgatgatgacacaagcataaaggtggaagactttggcctagaagatgaacatggccttctgaattttgctaagcatgttgatggttccttgacttcaccagaagattggaatgcttttgaatccaatgatctattaggccaatcaaccactgatgattaccaatggtgggacttctggtcctgaatgaaacagagcaaccaaaattttgtggaggaaatatttatgcatatgaatgcttcatgtttggttccacgttggcgacttagattcgataactgggtagcaattagttatagctttcacg
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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