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2024-03-29 07:26:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001354861            1005 bp    mRNA    linear   PLN 29-APR-2021
DEFINITION  Glycine max homeodomain/HOMEOBOX transcription factor
            (LOC100797862), mRNA.
ACCESSION   NM_001354861 XM_003528727
VERSION     NM_001354861.1
KEYWORDS    RefSeq.
SOURCE      Glycine max (soybean)
  ORGANISM  Glycine max
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50
            kb inversion clade; NPAAA clade; indigoferoid/millettioid clade;
            Phaseoleae; Glycine; Glycine subgen. Soja.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            ACUP04002421.1 and AK245374.1.
            
            On Aug 26, 2017 this sequence version replaced XM_003528727.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU548199.1, FK017342.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN09064557, SAMN09064558
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 ACUP04002421.1     4785-4788
            5-953               AK245374.1         2-950
            954-1005            ACUP04002421.1     6025-6076
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Glycine max"
                     /mol_type="mRNA"
                     /cultivar="Williams 82"
                     /db_xref="taxon:3847"
                     /chromosome="7"
                     /map="7"
     gene            1..1005
                     /gene="LOC100797862"
                     /note="homeodomain/HOMEOBOX transcription factor"
                     /db_xref="GeneID:100797862"
     exon            1..521
                     /gene="LOC100797862"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    153..155
                     /gene="LOC100797862"
                     /note="upstream in-frame stop codon"
     CDS             168..884
                     /gene="LOC100797862"
                     /note="homeobox-leucine zipper protein ATHB-12-like"
                     /codon_start=1
                     /product="homeodomain/HOMEOBOX transcription factor"
                     /protein_id="NP_001341790.1"
                     /db_xref="GeneID:100797862"
                     /translation="
MEYTYSAGVEAETHTSSSTTPSRSKKRNNNTRRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKENQTLLIQLQKLNHLMQKPMEPGQRCTQVEAANSMDSESENGGTMKCEAEGKPSPSMEISEHLLGVLSDDDTSIKVEDFGLEDEHGLLNFAKHVDGSLTSPEDWNAFESNDLLGQSTTDDYQWWDFWS"
     misc_feature    264..416
                     /gene="LOC100797862"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(264..266,384..386,393..398,405..407)
                     /gene="LOC100797862"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    420..545
                     /gene="LOC100797862"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     exon            522..1005
                     /gene="LOC100797862"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gaccaccatgataggaactccaataagcaaaagccaattgatacgtgcatatcacaaaactactcttaaacacacacacaccccaaaaaaatcctctatcaccaaactcacctatttcctcaactcaaggccctatagtcccagcaagtgagtgagcgtcacacaacatggaatatacttattcagcaggtgtagaggcagaaactcacacaagtagcagcaccaccccatcaagatcaaagaagagaaacaacaacacaagaaggttcagtgatgaacaaatcaaatcattggagaccatgtttgaatcagagtcaaggcttgagcctagaaagaagttgcagctggccagagagcttggattgcagccaaggcaagttgctatatggtttcagaacaagagggctaggtggaagtcaaagcaacttgagagagactatggcatactccaatccaattacaacagtttggcttcccgttttgaagctcttaagaaggaaaatcaaacattactaattcagctgcagaagctgaatcatctaatgcagaagccaatggagccaggtcagagatgcacacaagttgaagcagcaaacagcatggacagtgaatcagaaaatggaggcaccatgaaatgtgaagctgagggaaagccaagcccatcaatggaaatatcagaacatttacttggtgttctgtctgatgatgacacaagcataaaggtggaagactttggcctagaagatgaacatggccttctgaattttgctaagcatgttgatggttccttgacttcaccagaagattggaatgcttttgaatccaatgatctattaggccaatcaaccactgatgattaccaatggtgggacttctggtcctgaatgaaacagagcaaccaaaattttgtggaggaaatatttatgcatatgaatgcttcatgtttggttccacgttggcgacttagattcgataactgggtagcaattagttatagctttcacg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]